annotate cpt_psm_recombine/lib/CPT/Plot/Class.pm @ 0:b18e8268bf4e draft

Uploaded
author cpt
date Tue, 05 Jul 2022 05:05:13 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
1 package CPT::Plot::Class;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
2 use Moose;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
3 use Data::Dumper;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
4
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
5 # ABSTRACT: Class of objects for use in a genome map
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
6 #
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
7 has 'objects' => ( is => 'rw', isa => 'ArrayRef', default => sub { [] } );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
8
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
9 # Should this class be used in calculation of partitions
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
10 has 'included' => ( is => 'rw', isa => 'Bool' );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
11
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
12 has 'key' => ( is => 'rw', isa => 'Str' );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
13 has 'color' => ( is => 'rw', isa => 'Str' );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
14 has 'border' => ( is => 'rw', isa => 'Str' );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
15 has 'plot' => ( is => 'rw', isa => 'Bool' );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
16
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
17 sub addObject {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
18 my ( $self, $object ) = @_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
19 push( @{ $self->objects() }, $object );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
20 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
21
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
22 sub getItemList {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
23 my ($self) = @_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
24 my @items;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
25 foreach ( @{ $self->objects() } ) {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
26 push( @items, $_->getLocations() );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
27 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
28 return \@items;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
29 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
30
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
31 sub getObjects {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
32 my ($self) = @_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
33 return $self->objects();
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
34 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
35
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
36 sub getMemberCount {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
37 my ($self) = @_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
38 return scalar @{ $self->objects() };
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
39 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
40
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
41 no Moose;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
42 1;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
43
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
44 __END__
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
45
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
46 =pod
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
47
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
48 =encoding UTF-8
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
49
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
50 =head1 NAME
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
51
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
52 CPT::Plot::Class - Class of objects for use in a genome map
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
53
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
54 =head1 VERSION
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
55
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
56 version 1.96
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
57
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
58 =head1 AUTHOR
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
59
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
60 Eric Rasche <rasche.eric@yandex.ru>
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
61
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
62 =head1 COPYRIGHT AND LICENSE
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
63
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
64 This software is Copyright (c) 2014 by Eric Rasche.
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
65
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
66 This is free software, licensed under:
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
67
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
68 The GNU General Public License, Version 3, June 2007
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
69
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
70 =cut