annotate cpt_psm_recombine/lib/CPT/Writer/TSV.pm @ 0:b18e8268bf4e draft

Uploaded
author cpt
date Tue, 05 Jul 2022 05:05:13 +0000
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
1 package CPT::Writer::TSV;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
2 no warnings;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
3 use Moose;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
4 with 'CPT::Writer';
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
5
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
6 sub process {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
7 my ($self) = @_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
8 my %data = %{ $self->data };
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
9
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
10 my @sheets = keys %data;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
11 my %complete_processed_data = map { $_ => "" } @sheets;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
12 foreach (@sheets) {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
13 my $tmp_data = '';
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
14 my $data_struc_ref = $data{$_};
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
15 $tmp_data .= '"'
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
16 . join( "\"\t\"",
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
17 map { local $_ = $_; s/"/\\"/g; $_ }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
18 @{ ${$data_struc_ref}{'header'} } )
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
19 . '"' . "\n";
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
20 foreach ( @{ ${$data_struc_ref}{'data'} } ) {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
21 $tmp_data .= '"' . join(
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
22 "\"\t\"",
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
23 map {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
24 local $_ = $_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
25 unless (defined $_) { $_ = "" }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
26 s/"/\\"/g;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
27 $_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
28 } @{$_}
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
29 ) . '"' . "\n";
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
30 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
31 $complete_processed_data{$_} = $tmp_data;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
32 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
33 $self->processed_data( \%complete_processed_data );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
34 $self->processing_complete(1);
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
35 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
36
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
37 sub write {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
38
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
39 # Wanted to use child's write method here so I can output multiple files.
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
40 my ($self) = @_;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
41 if ( $self->processing_complete ) {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
42 my %complete_processed_data = %{ $self->processed_data() };
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
43 my @sheets = keys %complete_processed_data;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
44
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
45 # When this is initially called, the OutputFilesClass was given
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
46 # a hint as to what files from this analysis should be called.
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
47 # We'll borrow that and modify it each time before putting it
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
48 # back at the end. Since this is the *ONLY* type that has
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
49 # sub-reports, it feels O.K. to do it here.
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
50 my $base_name = $self->OutputFilesClass->given_filename();
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
51 unless ($base_name) { $base_name = ""; }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
52 foreach (@sheets) {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
53 # We update the base filename to include our
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
54 # particular Sheet name. As such the generate function
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
55 # should start generating files with that as part of
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
56 # the name
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
57 $self->OutputFilesClass->given_filename( $base_name . '.' . $_ );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
58 $self->OutputFilesClass->extension('csv');
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
59 my $next_output_file =
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
60 $self->OutputFilesClass->get_next_file();
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
61
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
62 # Store the filename we used
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
63 push(@{$self->used_filenames()}, $next_output_file);
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
64 open( my $outfile, '>', $next_output_file );
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
65 print $outfile $complete_processed_data{$_};
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
66 close($outfile);
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
67 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
68 # Reset it back to default (probably unnecessary)
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
69 $self->OutputFilesClass->given_filename($base_name);
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
70 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
71 else {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
72 warn
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
73 "Write called but processing was not marked as complete. Not writing";
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
74 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
75
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
76 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
77
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
78 sub suffix {
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
79 return 'csv';
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
80 }
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
81 no Moose;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
82 1;
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
83
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
84 __END__
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
85
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
86 =pod
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
87
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
88 =encoding UTF-8
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
89
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
90 =head1 NAME
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
91
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
92 CPT::Writer::TSV
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
93
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
94 =head1 VERSION
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
95
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
96 version 1.99.4
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
97
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
98 =head1 AUTHOR
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
99
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
100 Eric Rasche <rasche.eric@yandex.ru>
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
101
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
102 =head1 COPYRIGHT AND LICENSE
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
103
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
104 This software is Copyright (c) 2014 by Eric Rasche.
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
105
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
106 This is free software, licensed under:
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
107
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
108 The GNU General Public License, Version 3, June 2007
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
109
b18e8268bf4e Uploaded
cpt
parents:
diff changeset
110 =cut