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view lib/CPT/Bio/DataSource/GenBank.pm @ 2:d09346afadfa draft default tip
planemo upload commit f33bdf952d796c5d7a240b132af3c4cbd102decc
author | cpt |
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date | Fri, 05 Jan 2024 05:56:18 +0000 |
parents | 97ef96676b48 |
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package CPT::Bio::DataSource::GenBank; no warnings; use Moose; with 'CPT::Bio::DataSource'; has 'file' => ( is => 'rw', isa => 'Str' ); sub getSeqIO { my ($self) = @_; use Bio::SeqIO; my $seqio = Bio::SeqIO->new( -file => $self->file(), -format => 'GenBank', ); my @results; return $seqio; } no Moose; 1; __END__ =pod =encoding UTF-8 =head1 NAME CPT::Bio::DataSource::GenBank =head1 VERSION version 1.99.4 =head2 getSeqIO $gbk_ds->getSeqIO(); supposed to return a genabnk DS. Not tested. =head1 AUTHOR Eric Rasche <rasche.eric@yandex.ru> =head1 COPYRIGHT AND LICENSE This software is Copyright (c) 2014 by Eric Rasche. This is free software, licensed under: The GNU General Public License, Version 3, June 2007 =cut