Mercurial > repos > cpt > cpt_search_file
comparison data/README.md @ 1:6e3a843b6304 draft
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
| author | cpt |
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| date | Mon, 05 Jun 2023 02:53:18 +0000 |
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| 0:bd2ff2c7e806 | 1:6e3a843b6304 |
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| 1 # Data location for proximity to lysis project | |
| 2 | |
| 3 ### lysis-family-v.1.0.3.json : Added new spanin domain synonyms. Terms found from spanin dbase analysis by @JRR. | |
| 4 | |
| 5 # /attic | |
| 6 old/obsolete/unused data. Kept only to follow tracks. | |
| 7 | |
| 8 ### lysis-family.json : houses synonyms for lysis queries | |
| 9 ### GO-lysis-query.json : GO term lysis synonyms found using goQuery.py | |
| 10 ### go-synonym-results.txt : tab-delimited results from initial goQuery.py | |
| 11 ### go-synonym-results-JRR.txt : @JRR culled results from go-synonym-results.txt | |
| 12 ### lysis-family-expanded.json : Merged results from lysis-family.json and GO-lysis-query.json | |
| 13 ### lysis-family-expanded_culled.json : Cleaned up version of the expanded.json | |
| 14 ### lysis-family-v.1.0.0.json : First offical version of lysis family dbase. Revised based on additions/critiques by @LM and @JRR | |
| 15 ### lysis-family-v.1.0.1.json : Added new domains for both holins and spanins. | |
| 16 ### lysis-family-v.1.0.2.json : Added new spanin synonyms. | |
| 17 | |
| 18 # /term_additions | |
| 19 * Files made by @JRR and/or @LTM to add terms to the database | |
| 20 ### endolysin domains to add.txt : citation ==> [PMID: 30873139](https://www.ncbi.nlm.nih.gov/pubmed/30873139) | |
| 21 ### 200505_Spanin_Domains.txt : citation ==> [Spanin Interpro](http://www.ebi.ac.uk/interpro/search/text/spanin/?page=1#table) | |
| 22 ### 200505_holin_domains.txt : citation ==> [Holin Interpro](http://www.ebi.ac.uk/interpro/search/text/holin/?page=1#table) |