Mercurial > repos > cpt > cpt_search_file
diff data/README.md @ 1:6e3a843b6304 draft
planemo upload commit 94b0cd1fff0826c6db3e7dc0c91c0c5a8be8bb0c
author | cpt |
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date | Mon, 05 Jun 2023 02:53:18 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data/README.md Mon Jun 05 02:53:18 2023 +0000 @@ -0,0 +1,22 @@ +# Data location for proximity to lysis project + +### lysis-family-v.1.0.3.json : Added new spanin domain synonyms. Terms found from spanin dbase analysis by @JRR. + +# /attic +old/obsolete/unused data. Kept only to follow tracks. + +### lysis-family.json : houses synonyms for lysis queries +### GO-lysis-query.json : GO term lysis synonyms found using goQuery.py +### go-synonym-results.txt : tab-delimited results from initial goQuery.py +### go-synonym-results-JRR.txt : @JRR culled results from go-synonym-results.txt +### lysis-family-expanded.json : Merged results from lysis-family.json and GO-lysis-query.json +### lysis-family-expanded_culled.json : Cleaned up version of the expanded.json +### lysis-family-v.1.0.0.json : First offical version of lysis family dbase. Revised based on additions/critiques by @LM and @JRR +### lysis-family-v.1.0.1.json : Added new domains for both holins and spanins. +### lysis-family-v.1.0.2.json : Added new spanin synonyms. + +# /term_additions +* Files made by @JRR and/or @LTM to add terms to the database +### endolysin domains to add.txt : citation ==> [PMID: 30873139](https://www.ncbi.nlm.nih.gov/pubmed/30873139) +### 200505_Spanin_Domains.txt : citation ==> [Spanin Interpro](http://www.ebi.ac.uk/interpro/search/text/spanin/?page=1#table) +### 200505_holin_domains.txt : citation ==> [Holin Interpro](http://www.ebi.ac.uk/interpro/search/text/holin/?page=1#table) \ No newline at end of file