Mercurial > repos > crs4 > blat
annotate tool_dependencies.xml @ 0:0a71a7d35d09 draft
Uploaded
| author | crs4 |
|---|---|
| date | Wed, 16 Oct 2013 13:54:38 -0400 |
| parents | |
| children | c4ad58c4bc7d |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <tool_dependency> | |
| 3 <package name="blat" version="35"> | |
| 4 <!-- <repository name="package_blat_35x1" owner="iuc" /> This may be used instead of everything inside <install> when a stable Galaxy release will support the 'download_binary' action type --> | |
| 5 <install version="1.0"> | |
| 6 <actions> | |
| 7 <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> | |
| 8 <action type="shell_command">export MACHTYPE=`uname -m` && export HOME=$INSTALL_DIR && mkdir -p $HOME/bin/$MACHTYPE && make</action> | |
| 9 <action type="set_environment"> | |
| 10 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable> | |
| 11 </action> | |
| 12 </actions> | |
| 13 </install> | |
| 14 </package> | |
| 15 </tool_dependency> |