Mercurial > repos > crs4 > blat
diff tool_dependencies.xml @ 0:0a71a7d35d09 draft
Uploaded
author | crs4 |
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date | Wed, 16 Oct 2013 13:54:38 -0400 |
parents | |
children | c4ad58c4bc7d |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Oct 16 13:54:38 2013 -0400 @@ -0,0 +1,15 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="blat" version="35"> +<!-- <repository name="package_blat_35x1" owner="iuc" /> This may be used instead of everything inside <install> when a stable Galaxy release will support the 'download_binary' action type --> + <install version="1.0"> + <actions> + <action type="download_by_url" target_filename="blatSrc.zip">http://hgwdev.cse.ucsc.edu/~kent/src/blatSrc35.zip</action> + <action type="shell_command">export MACHTYPE=`uname -m` && export HOME=$INSTALL_DIR && mkdir -p $HOME/bin/$MACHTYPE && make</action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin/`uname -m`</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency>