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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="edge-pro" version="1.3.1">
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4 <install version="1.0">
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5 <actions>
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6 <action type="download_by_url">http://ccb.jhu.edu/software/EDGE-pro/EDGE_pro_v1.3.1.tar.gz</action>
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7 <action type="shell_command">make</action>
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8 <action type="move_file">
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9 <source>count</source>
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10 <destination>$INSTALL_DIR/bin</destination>
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11 </action>
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12 <action type="move_file">
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13 <source>edge.pl</source>
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14 <destination>$INSTALL_DIR/bin</destination>
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15 </action>
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16 <action type="set_environment">
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 Dependencies of EDGE-pro which needs to be installed separately:
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23 - bowtie2 ( http://bowtie-bio.sourceforge.net/bowtie2/ ), in particular bowtie2, bowtie2-align and bowtie2-build need to be in the $PATH . These are usually already installed for Galaxy;
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24 - Switch Perl core module ( http://search.cpan.org/~rgarcia/Switch/Switch.pm ).
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25 </readme>
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26 </package>
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27 </tool_dependency>
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