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comparison edge_pro.xml @ 1:f77ce4f92b46 draft

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Use $GALAXY_SLOTS instead of $EDGE_PRO_SITE_OPTIONS. Add dependency on bowtie2. Add readme.rst .
author crs4
date Fri, 31 Jan 2014 05:44:03 -0500
parents 7af33315bc5e
children bad8a51514dd
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0:7af33315bc5e 1:f77ce4f92b46
1 <tool id="edge_pro" name="EDGE-pro" version="1.0.0"> 1 <tool id="edge_pro" name="EDGE-pro" version="1.0.0">
2 <description>Gene expression in Prokaryotes</description> 2 <description>Gene expression in Prokaryotes</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.1.0">bowtie2</requirement>
4 <requirement type="package" version="1.3.1">edge-pro</requirement> 5 <requirement type="package" version="1.3.1">edge-pro</requirement>
5 </requirements> 6 </requirements>
6 <command interpreter="python"> 7 <command interpreter="python">
7 edge_pro.py 8 edge_pro.py
8 \${EDGE_PRO_SITE_OPTIONS:---num-threads=4} 9 --num-threads=\${GALAXY_SLOTS:-4}
9 10
10 ## Mandatory input parameters 11 ## Mandatory input parameters
11 --genome $genome 12 --genome $genome
12 --ptt $ptt 13 --ptt $ptt
13 --rnt $rnt 14 --rnt $rnt