Mercurial > repos > crs4 > edge_pro

diff edge_pro.xml @ 1:f77ce4f92b46 draft

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Use $GALAXY_SLOTS instead of $EDGE_PRO_SITE_OPTIONS. Add dependency on bowtie2. Add readme.rst .
author crs4
date Fri, 31 Jan 2014 05:44:03 -0500
parents 7af33315bc5e
children bad8a51514dd
line wrap: on
line diff
--- a/edge_pro.xml	Mon Sep 09 06:11:47 2013 -0400
+++ b/edge_pro.xml	Fri Jan 31 05:44:03 2014 -0500
@@ -1,11 +1,12 @@
 <tool id="edge_pro" name="EDGE-pro" version="1.0.0">
   <description>Gene expression in Prokaryotes</description>
   <requirements>
+    <requirement type="package" version="2.1.0">bowtie2</requirement>
     <requirement type="package" version="1.3.1">edge-pro</requirement>
   </requirements>
   <command interpreter="python">
     edge_pro.py
-    \${EDGE_PRO_SITE_OPTIONS:---num-threads=4}
+    --num-threads=\${GALAXY_SLOTS:-4}
     
     ## Mandatory input parameters
     --genome $genome