diff get_edge_data.xml @ 0:7af33315bc5e draft

Uploaded
author crs4
date Mon, 09 Sep 2013 06:11:47 -0400
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/get_edge_data.xml	Mon Sep 09 06:11:47 2013 -0400
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+<tool id="get_edge_data" name="Get EDGE-pro files" version="1.0.1">
+  <description></description>
+  <command interpreter="python">get_edge_data.py -i "$gbkid" --fna $fnafile --ptt $pttfile --rnt $rntfile --gff $gfffile</command>
+
+  <inputs>
+    <param name="gbkid" type="text" value="NC_" label="RefSeq Genomic Accession ID">
+      <validator type="empty_field" />
+    </param>
+  </inputs>
+  <outputs>
+    <data name="fnafile" format="fasta" label="${tool.name} on ${on_string}: FASTA" />
+    <data name="pttfile" format="ptt" label="${tool.name} on ${on_string}: PTT" />
+    <data name="rntfile" format="rnt" label="${tool.name} on ${on_string}: RNT" />
+    <data name="gfffile" format="gff" label="${tool.name} on ${on_string}: GFF" />
+  </outputs>
+  <tests>
+
+  </tests>
+  <help>
+**What it does**
+
+This tool retrieves from NCBI the files required by `EDGE-pro`_.
+
+.. _EDGE-pro: http://ccb.jhu.edu/software/EDGE-pro/
+
+**License and citation**
+
+This Galaxy tool is Copyright © 2012-2013 `CRS4 Srl.`_ and is released under the `MIT license`_.
+
+.. _CRS4 Srl.: http://www.crs4.it/
+.. _MIT license: http://opensource.org/licenses/MIT
+
+If you use this tool in Galaxy, please cite |Cuccuru2013|_.
+
+.. |Cuccuru2013| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2013) Orione, a web-based framework for NGS analysis in microbiology. *Submitted*
+.. _Cuccuru2013: http://orione.crs4.it/
+  </help>
+</tool>