Mercurial > repos > crs4 > edge_pro
diff get_edge_data.xml @ 0:7af33315bc5e draft
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author | crs4 |
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date | Mon, 09 Sep 2013 06:11:47 -0400 |
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children | bad8a51514dd |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/get_edge_data.xml Mon Sep 09 06:11:47 2013 -0400 @@ -0,0 +1,38 @@ +<tool id="get_edge_data" name="Get EDGE-pro files" version="1.0.1"> + <description></description> + <command interpreter="python">get_edge_data.py -i "$gbkid" --fna $fnafile --ptt $pttfile --rnt $rntfile --gff $gfffile</command> + + <inputs> + <param name="gbkid" type="text" value="NC_" label="RefSeq Genomic Accession ID"> + <validator type="empty_field" /> + </param> + </inputs> + <outputs> + <data name="fnafile" format="fasta" label="${tool.name} on ${on_string}: FASTA" /> + <data name="pttfile" format="ptt" label="${tool.name} on ${on_string}: PTT" /> + <data name="rntfile" format="rnt" label="${tool.name} on ${on_string}: RNT" /> + <data name="gfffile" format="gff" label="${tool.name} on ${on_string}: GFF" /> + </outputs> + <tests> + + </tests> + <help> +**What it does** + +This tool retrieves from NCBI the files required by `EDGE-pro`_. + +.. _EDGE-pro: http://ccb.jhu.edu/software/EDGE-pro/ + +**License and citation** + +This Galaxy tool is Copyright © 2012-2013 `CRS4 Srl.`_ and is released under the `MIT license`_. + +.. _CRS4 Srl.: http://www.crs4.it/ +.. _MIT license: http://opensource.org/licenses/MIT + +If you use this tool in Galaxy, please cite |Cuccuru2013|_. + +.. |Cuccuru2013| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2013) Orione, a web-based framework for NGS analysis in microbiology. *Submitted* +.. _Cuccuru2013: http://orione.crs4.it/ + </help> +</tool>