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1 <tool id="get_edge_data" name="Get EDGE-pro files" version="1.0.1">
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2 <description></description>
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3 <command interpreter="python">get_edge_data.py -i "$gbkid" --fna $fnafile --ptt $pttfile --rnt $rntfile --gff $gfffile</command>
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4
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5 <inputs>
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6 <param name="gbkid" type="text" value="NC_" label="RefSeq Genomic Accession ID">
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7 <validator type="empty_field" />
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8 </param>
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9 </inputs>
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10 <outputs>
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11 <data name="fnafile" format="fasta" label="${tool.name} on ${on_string}: FASTA" />
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12 <data name="pttfile" format="ptt" label="${tool.name} on ${on_string}: PTT" />
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13 <data name="rntfile" format="rnt" label="${tool.name} on ${on_string}: RNT" />
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14 <data name="gfffile" format="gff" label="${tool.name} on ${on_string}: GFF" />
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15 </outputs>
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16 <tests>
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17
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18 </tests>
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19 <help>
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20 **What it does**
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21
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22 This tool retrieves from NCBI the files required by `EDGE-pro`_.
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23
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24 .. _EDGE-pro: http://ccb.jhu.edu/software/EDGE-pro/
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25
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26 **License and citation**
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27
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28 This Galaxy tool is Copyright © 2012-2013 `CRS4 Srl.`_ and is released under the `MIT license`_.
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29
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30 .. _CRS4 Srl.: http://www.crs4.it/
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31 .. _MIT license: http://opensource.org/licenses/MIT
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32
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33 If you use this tool in Galaxy, please cite |Cuccuru2013|_.
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34
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35 .. |Cuccuru2013| replace:: Cuccuru, G., Orsini, M., Pinna, A., Sbardellati, A., Soranzo, N., Travaglione, A., Uva, P., Zanetti, G., Fotia, G. (2013) Orione, a web-based framework for NGS analysis in microbiology. *Submitted*
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36 .. _Cuccuru2013: http://orione.crs4.it/
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37 </help>
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38 </tool>
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