Mercurial > repos > crs4 > kggseq_variant_selection

changeset 5:ed0dbb61f0e1 draft

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planemo upload
author crs4
date Thu, 04 Aug 2016 05:53:40 -0400
parents a13b8ff61c6c
children 4e47d0245887
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Aug 04 04:40:06 2016 -0400
+++ b/tool_dependencies.xml	Thu Aug 04 05:53:40 2016 -0400
@@ -1,9 +1,9 @@
 <?xml version="1.0"?>
 <tool_dependency>
-  <package name="kggseq" version="1.0_20160412">
+  <package name="kggseq" version="1.0_20160707">
     <install version="1.0">
       <actions>
-        <action type="download_by_url" target_filename="kggseq_archive-v1.0_20160412.tar.gz">https://github.com/crs4/kggseq_archive/archive/v1.0_20160412.tar.gz</action>
+        <action type="download_by_url" target_filename="kggseq_archive-v1.0_20160707.tar.gz">https://github.com/crs4/kggseq_archive/archive/v1.0_20160707.tar.gz</action>
         <action type="shell_command">java -jar kggseq.jar --no-lib-check --resource resources --buildver hg19 --db-filter 1kgeur201305,1kgeas201305,1kgafr201305,1kgsas201305,1kgamr201305,1kg201305,1kg201204,1kgafr201204,1kgeur201204,1kgamr201204,1kgasn201204,dbsnp135,dbsnp137,dbsnp138,dbsnp138nf,dbsnp141,ESP6500AA,ESP6500EA,exac --genome-annot --db-gene refgene,gencode,knowngene,ensembl --db-score dbnsfp --superdup-annot --cosmic-annot --omim-annot --scsnv-annot --mouse-pheno --zebrafish-pheno --ddd-annot --mendel-causing-predict all  --patho-gene-predict --dgv-cnv-annot --o-flanking-seq 10  --vcf-file examples-lite/rare.disease.hg19.vcf</action>
         <action type="move_directory_files">
           <source_directory>.</source_directory>