Mercurial > repos > crs4 > prokka

comparison test-data/out.gbk @ 13:a17498c603ec draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit ce8dd97ca529558ec475f5eb1f2ce40d765fe396
author iuc
date Tue, 21 Mar 2017 10:13:06 -0400
parents 392255fa7ab9
children eaee459f3d69
comparison
equal deleted inserted replaced
12:da479161bbe4 13:a17498c603ec
1 LOCUS contig1 350 bp DNA linear 11-OCT-2016 1 LOCUS contig1 350 bp DNA linear 21-MAR-2017
2 DEFINITION Genus species strain strain. 2 DEFINITION Genus species strain strain.
3 ACCESSION 3 ACCESSION
4 VERSION 4 VERSION
5 KEYWORDS . 5 KEYWORDS .
6 SOURCE Genus species 6 SOURCE Genus species
7 ORGANISM Genus species 7 ORGANISM Genus species
8 Unclassified. 8 Unclassified.
9 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. 9 COMMENT Annotated using prokka 1.12 from
10 https://github.com/tseemann/prokka.
10 FEATURES Location/Qualifiers 11 FEATURES Location/Qualifiers
11 source 1..350 12 source 1..350
12 /organism="Genus species" 13 /organism="Genus species"
13 /mol_type="genomic DNA" 14 /mol_type="genomic DNA"
14 /strain="strain" 15 /strain="strain"
18 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt 19 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt
19 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag 20 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag
20 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt 21 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt
21 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc 22 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc
22 // 23 //
23 LOCUS contig2 840 bp DNA linear 11-OCT-2016 24 LOCUS contig2 840 bp DNA linear 21-MAR-2017
24 DEFINITION Genus species strain strain. 25 DEFINITION Genus species strain strain.
25 ACCESSION 26 ACCESSION
26 VERSION 27 VERSION
27 KEYWORDS . 28 KEYWORDS .
28 SOURCE Genus species 29 SOURCE Genus species
29 ORGANISM Genus species 30 ORGANISM Genus species
30 Unclassified. 31 Unclassified.
31 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. 32 COMMENT Annotated using prokka 1.12 from
33 https://github.com/tseemann/prokka.
32 FEATURES Location/Qualifiers 34 FEATURES Location/Qualifiers
33 source 1..840 35 source 1..840
34 /organism="Genus species" 36 /organism="Genus species"
35 /mol_type="genomic DNA" 37 /mol_type="genomic DNA"
36 /strain="strain" 38 /strain="strain"
37 CDS 40..498 39 CDS 40..498
38 /locus_tag="PROKKA_00001" 40 /locus_tag="PROKKA_00001"
39 /inference="ab initio prediction:Prodigal:2.60" 41 /inference="ab initio prediction:Prodigal:2.6"
40 /codon_start=1 42 /codon_start=1
41 /transl_table=11 43 /transl_table=11
42 /product="hypothetical protein" 44 /product="hypothetical protein"
43 /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI 45 /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI
44 ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE 46 ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE
45 FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM" 47 FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM"
46 CDS 498..614 48 CDS 498..614
47 /locus_tag="PROKKA_00002" 49 /locus_tag="PROKKA_00002"
48 /inference="ab initio prediction:Prodigal:2.60" 50 /inference="ab initio prediction:Prodigal:2.6"
49 /codon_start=1 51 /codon_start=1
50 /transl_table=11 52 /transl_table=11
51 /product="hypothetical protein" 53 /product="hypothetical protein"
52 /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" 54 /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF"
53 ORIGIN 55 ORIGIN
64 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata 66 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata
65 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc 67 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc
66 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga 68 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga
67 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta 69 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta
68 // 70 //
69 LOCUS contig3 210 bp DNA linear 11-OCT-2016 71 LOCUS contig3 210 bp DNA linear 21-MAR-2017
70 DEFINITION Genus species strain strain. 72 DEFINITION Genus species strain strain.
71 ACCESSION 73 ACCESSION
72 VERSION 74 VERSION
73 KEYWORDS . 75 KEYWORDS .
74 SOURCE Genus species 76 SOURCE Genus species
75 ORGANISM Genus species 77 ORGANISM Genus species
76 Unclassified. 78 Unclassified.
77 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. 79 COMMENT Annotated using prokka 1.12 from
80 https://github.com/tseemann/prokka.
78 FEATURES Location/Qualifiers 81 FEATURES Location/Qualifiers
79 source 1..210 82 source 1..210
80 /organism="Genus species" 83 /organism="Genus species"
81 /mol_type="genomic DNA" 84 /mol_type="genomic DNA"
82 /strain="strain" 85 /strain="strain"
84 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta 87 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta
85 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata 88 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata
86 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt 89 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt
87 181 tgtttcaggg ttatttgaat atctataaca 90 181 tgtttcaggg ttatttgaat atctataaca
88 // 91 //
89 LOCUS contig4 1260 bp DNA linear 11-OCT-2016 92 LOCUS contig4 1260 bp DNA linear 21-MAR-2017
90 DEFINITION Genus species strain strain. 93 DEFINITION Genus species strain strain.
91 ACCESSION 94 ACCESSION
92 VERSION 95 VERSION
93 KEYWORDS . 96 KEYWORDS .
94 SOURCE Genus species 97 SOURCE Genus species
95 ORGANISM Genus species 98 ORGANISM Genus species
96 Unclassified. 99 Unclassified.
97 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. 100 COMMENT Annotated using prokka 1.12 from
101 https://github.com/tseemann/prokka.
98 FEATURES Location/Qualifiers 102 FEATURES Location/Qualifiers
99 source 1..1260 103 source 1..1260
100 /organism="Genus species" 104 /organism="Genus species"
101 /mol_type="genomic DNA" 105 /mol_type="genomic DNA"
102 /strain="strain" 106 /strain="strain"
103 CDS 21..884 107 CDS 21..884
104 /locus_tag="PROKKA_00003" 108 /locus_tag="PROKKA_00003"
105 /inference="ab initio prediction:Prodigal:2.60" 109 /inference="ab initio prediction:Prodigal:2.6"
106 /codon_start=1 110 /codon_start=1
107 /transl_table=11 111 /transl_table=11
108 /product="hypothetical protein" 112 /product="hypothetical protein"
109 /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM 113 /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM
110 TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN 114 TTSTTSIDIMGLQAAYANLHTDQERDYFMQRYHDVISSFGGKTSYDADNRPLLVMRSN
133 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc 137 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc
134 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt 138 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt
135 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc 139 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc
136 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc 140 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc
137 // 141 //
138 LOCUS contig5 490 bp DNA linear 11-OCT-2016 142 LOCUS contig5 490 bp DNA linear 21-MAR-2017
139 DEFINITION Genus species strain strain. 143 DEFINITION Genus species strain strain.
140 ACCESSION 144 ACCESSION
141 VERSION 145 VERSION
142 KEYWORDS . 146 KEYWORDS .
143 SOURCE Genus species 147 SOURCE Genus species
144 ORGANISM Genus species 148 ORGANISM Genus species
145 Unclassified. 149 Unclassified.
146 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. 150 COMMENT Annotated using prokka 1.12 from
151 https://github.com/tseemann/prokka.
147 FEATURES Location/Qualifiers 152 FEATURES Location/Qualifiers
148 source 1..490 153 source 1..490
149 /organism="Genus species" 154 /organism="Genus species"
150 /mol_type="genomic DNA" 155 /mol_type="genomic DNA"
151 /strain="strain" 156 /strain="strain"
152 CDS 275..406 157 CDS 275..406
153 /locus_tag="PROKKA_00004" 158 /locus_tag="PROKKA_00004"
154 /inference="ab initio prediction:Prodigal:2.60" 159 /inference="ab initio prediction:Prodigal:2.6"
155 /codon_start=1 160 /codon_start=1
156 /transl_table=11 161 /transl_table=11
157 /product="hypothetical protein" 162 /product="hypothetical protein"
158 /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" 163 /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL"
159 ORIGIN 164 ORIGIN
165 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc 170 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc
166 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct 171 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct
167 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt 172 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt
168 481 tttgtttctg 173 481 tttgtttctg
169 // 174 //
170 LOCUS contig6 1960 bp DNA linear 11-OCT-2016 175 LOCUS contig6 1960 bp DNA linear 21-MAR-2017
171 DEFINITION Genus species strain strain. 176 DEFINITION Genus species strain strain.
172 ACCESSION 177 ACCESSION
173 VERSION 178 VERSION
174 KEYWORDS . 179 KEYWORDS .
175 SOURCE Genus species 180 SOURCE Genus species
176 ORGANISM Genus species 181 ORGANISM Genus species
177 Unclassified. 182 Unclassified.
178 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. 183 COMMENT Annotated using prokka 1.12 from
184 https://github.com/tseemann/prokka.
179 FEATURES Location/Qualifiers 185 FEATURES Location/Qualifiers
180 source 1..1960 186 source 1..1960
181 /organism="Genus species" 187 /organism="Genus species"
182 /mol_type="genomic DNA" 188 /mol_type="genomic DNA"
183 /strain="strain" 189 /strain="strain"
184 CDS 6..767 190 CDS 6..767
185 /locus_tag="PROKKA_00005" 191 /locus_tag="PROKKA_00005"
186 /inference="ab initio prediction:Prodigal:2.60" 192 /inference="ab initio prediction:Prodigal:2.6"
187 /codon_start=1 193 /codon_start=1
188 /transl_table=11 194 /transl_table=11
189 /product="hypothetical protein" 195 /product="hypothetical protein"
190 /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD 196 /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD
191 YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA 197 YLAAAFPELNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIA
225 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc 231 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc
226 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg 232 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg
227 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta 233 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta
228 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact 234 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact
229 // 235 //
230 LOCUS contig7 276 bp DNA linear 11-OCT-2016 236 LOCUS contig7 276 bp DNA linear 21-MAR-2017
231 DEFINITION Genus species strain strain. 237 DEFINITION Genus species strain strain.
232 ACCESSION 238 ACCESSION
233 VERSION 239 VERSION
234 KEYWORDS . 240 KEYWORDS .
235 SOURCE Genus species 241 SOURCE Genus species
236 ORGANISM Genus species 242 ORGANISM Genus species
237 Unclassified. 243 Unclassified.
238 COMMENT Annotated using prokka 1.11 from http://www.vicbioinformatics.com. 244 COMMENT Annotated using prokka 1.12 from
245 https://github.com/tseemann/prokka.
239 FEATURES Location/Qualifiers 246 FEATURES Location/Qualifiers
240 source 1..276 247 source 1..276
241 /organism="Genus species" 248 /organism="Genus species"
242 /mol_type="genomic DNA" 249 /mol_type="genomic DNA"
243 /strain="strain" 250 /strain="strain"