Mercurial > repos > crs4 > prokka

comparison test-data/out.gbk @ 14:eaee459f3d69 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/prokka/ commit 9019ffd38b2b6692fc24c9b41ab2c2539050b01f
author iuc
date Wed, 28 Mar 2018 12:38:42 -0400
parents a17498c603ec
children
comparison
equal deleted inserted replaced
13:a17498c603ec 14:eaee459f3d69
1 LOCUS contig1 350 bp DNA linear 21-MAR-2017 1 LOCUS contig1 350 bp DNA linear 27-MAR-2018
2 DEFINITION Genus species strain strain. 2 DEFINITION Genus species strain strain.
3 ACCESSION 3 ACCESSION
4 VERSION 4 VERSION
5 KEYWORDS . 5 KEYWORDS .
6 SOURCE Genus species 6 SOURCE Genus species
7 ORGANISM Genus species 7 ORGANISM Genus species
8 Unclassified. 8 Unclassified.
9 COMMENT Annotated using prokka 1.12 from 9 COMMENT Annotated using prokka 1.13 from
10 https://github.com/tseemann/prokka. 10 https://github.com/tseemann/prokka.
11 FEATURES Location/Qualifiers 11 FEATURES Location/Qualifiers
12 source 1..350 12 source 1..350
13 /organism="Genus species" 13 /organism="Genus species"
14 /mol_type="genomic DNA" 14 /mol_type="genomic DNA"
19 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt 19 121 tgctggcgga aaatgagaaa attcgaccta tccttgcgca gctcgagaag ctcttacttt
20 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag 20 181 gcgacctttc gccatcaact aacgattctg tcaaaaactg acgcgttgga tgaggagaag
21 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt 21 241 tggcttaata tgcttggcac gttcgtcaag gactggttta gatatgagtc acattttgtt
22 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc 22 301 catggtagag attctcttgt tgacatttta aaagagcgtg gattactatc
23 // 23 //
24 LOCUS contig2 840 bp DNA linear 21-MAR-2017 24 LOCUS contig2 840 bp DNA linear 27-MAR-2018
25 DEFINITION Genus species strain strain. 25 DEFINITION Genus species strain strain.
26 ACCESSION 26 ACCESSION
27 VERSION 27 VERSION
28 KEYWORDS . 28 KEYWORDS .
29 SOURCE Genus species 29 SOURCE Genus species
30 ORGANISM Genus species 30 ORGANISM Genus species
31 Unclassified. 31 Unclassified.
32 COMMENT Annotated using prokka 1.12 from 32 COMMENT Annotated using prokka 1.13 from
33 https://github.com/tseemann/prokka. 33 https://github.com/tseemann/prokka.
34 FEATURES Location/Qualifiers 34 FEATURES Location/Qualifiers
35 source 1..840 35 source 1..840
36 /organism="Genus species" 36 /organism="Genus species"
37 /mol_type="genomic DNA" 37 /mol_type="genomic DNA"
38 /strain="strain" 38 /strain="strain"
39 CDS 40..498 39 CDS 40..498
40 /locus_tag="PROKKA_00001" 40 /locus_tag="HMJLFLJH_00001"
41 /inference="ab initio prediction:Prodigal:2.6" 41 /inference="ab initio prediction:Prodigal:2.6"
42 /codon_start=1 42 /codon_start=1
43 /transl_table=11 43 /transl_table=11
44 /product="hypothetical protein" 44 /product="hypothetical protein"
45 /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI 45 /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWI
46 ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE 46 ATDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAE
47 FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM" 47 FTENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM"
48 CDS 498..614 48 CDS 498..614
49 /locus_tag="PROKKA_00002" 49 /locus_tag="HMJLFLJH_00002"
50 /inference="ab initio prediction:Prodigal:2.6" 50 /inference="ab initio prediction:Prodigal:2.6"
51 /codon_start=1 51 /codon_start=1
52 /transl_table=11 52 /transl_table=11
53 /product="hypothetical protein" 53 /product="hypothetical protein"
54 /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" 54 /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF"
66 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata 66 601 gtcaacaatt ttaattgcag gggcttcggc cccttacttg aggataaatt atgtctaata
67 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc 67 661 ttcaaactgg cgccgagcgt atgccgcatg acctttccca tcttggcttc cttgctggtc
68 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga 68 721 agattggtcg tcttattacc atttcaacta ctccggttat cgctggcgac tccttcgaga
69 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta 69 781 tggacgccgt tggcgctctc cgtctttctc cattgcgtcg tggccttgct attgactcta
70 // 70 //
71 LOCUS contig3 210 bp DNA linear 21-MAR-2017 71 LOCUS contig3 210 bp DNA linear 27-MAR-2018
72 DEFINITION Genus species strain strain. 72 DEFINITION Genus species strain strain.
73 ACCESSION 73 ACCESSION
74 VERSION 74 VERSION
75 KEYWORDS . 75 KEYWORDS .
76 SOURCE Genus species 76 SOURCE Genus species
77 ORGANISM Genus species 77 ORGANISM Genus species
78 Unclassified. 78 Unclassified.
79 COMMENT Annotated using prokka 1.12 from 79 COMMENT Annotated using prokka 1.13 from
80 https://github.com/tseemann/prokka. 80 https://github.com/tseemann/prokka.
81 FEATURES Location/Qualifiers 81 FEATURES Location/Qualifiers
82 source 1..210 82 source 1..210
83 /organism="Genus species" 83 /organism="Genus species"
84 /mol_type="genomic DNA" 84 /mol_type="genomic DNA"
87 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta 87 1 ctgtagacat ttttactttt tatgtccctc atcgtcacgt ttatggtgaa cagtggatta
88 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata 88 61 agttcatgaa ggatggtgtt aatgccactc ctctcccgac tgttaacact actggttata
89 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt 89 121 ttgaccatgc cgcttttctt ggcacgatta accctgatac caataaaatc cctaagcatt
90 181 tgtttcaggg ttatttgaat atctataaca 90 181 tgtttcaggg ttatttgaat atctataaca
91 // 91 //
92 LOCUS contig4 1260 bp DNA linear 21-MAR-2017 92 LOCUS contig4 1260 bp DNA linear 27-MAR-2018
93 DEFINITION Genus species strain strain. 93 DEFINITION Genus species strain strain.
94 ACCESSION 94 ACCESSION
95 VERSION 95 VERSION
96 KEYWORDS . 96 KEYWORDS .
97 SOURCE Genus species 97 SOURCE Genus species
98 ORGANISM Genus species 98 ORGANISM Genus species
99 Unclassified. 99 Unclassified.
100 COMMENT Annotated using prokka 1.12 from 100 COMMENT Annotated using prokka 1.13 from
101 https://github.com/tseemann/prokka. 101 https://github.com/tseemann/prokka.
102 FEATURES Location/Qualifiers 102 FEATURES Location/Qualifiers
103 source 1..1260 103 source 1..1260
104 /organism="Genus species" 104 /organism="Genus species"
105 /mol_type="genomic DNA" 105 /mol_type="genomic DNA"
106 /strain="strain" 106 /strain="strain"
107 CDS 21..884 107 CDS 21..884
108 /locus_tag="PROKKA_00003" 108 /locus_tag="HMJLFLJH_00003"
109 /inference="ab initio prediction:Prodigal:2.6" 109 /inference="ab initio prediction:Prodigal:2.6"
110 /codon_start=1 110 /codon_start=1
111 /transl_table=11 111 /transl_table=11
112 /product="hypothetical protein" 112 /product="hypothetical protein"
113 /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM 113 /translation="MPDRTEANPNELNQDDARYGFRCCHLKNIWTAPLPPETELSRQM
137 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc 137 1021 taattcaaac tttttttctg ataagctggt tctcacttct gttactccag cttcttcggc
138 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt 138 1081 acctgtttta cagacaccta aagctacatc gtcaacgtta tattttgata gtttgacggt
139 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc 139 1141 taatgctggt aatggtggtt ttcttcattg cattcagatg gatacatctg tcaacgccgc
140 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc 140 1201 taatcaggtt gtttctgttg gtgctgatat tgcttttgat gccgacccta aattttttgc
141 // 141 //
142 LOCUS contig5 490 bp DNA linear 21-MAR-2017 142 LOCUS contig5 490 bp DNA linear 27-MAR-2018
143 DEFINITION Genus species strain strain. 143 DEFINITION Genus species strain strain.
144 ACCESSION 144 ACCESSION
145 VERSION 145 VERSION
146 KEYWORDS . 146 KEYWORDS .
147 SOURCE Genus species 147 SOURCE Genus species
148 ORGANISM Genus species 148 ORGANISM Genus species
149 Unclassified. 149 Unclassified.
150 COMMENT Annotated using prokka 1.12 from 150 COMMENT Annotated using prokka 1.13 from
151 https://github.com/tseemann/prokka. 151 https://github.com/tseemann/prokka.
152 FEATURES Location/Qualifiers 152 FEATURES Location/Qualifiers
153 source 1..490 153 source 1..490
154 /organism="Genus species" 154 /organism="Genus species"
155 /mol_type="genomic DNA" 155 /mol_type="genomic DNA"
156 /strain="strain" 156 /strain="strain"
157 CDS 275..406 157 CDS 275..406
158 /locus_tag="PROKKA_00004" 158 /locus_tag="HMJLFLJH_00004"
159 /inference="ab initio prediction:Prodigal:2.6" 159 /inference="ab initio prediction:Prodigal:2.6"
160 /codon_start=1 160 /codon_start=1
161 /transl_table=11 161 /transl_table=11
162 /product="hypothetical protein" 162 /product="hypothetical protein"
163 /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL" 163 /translation="MVLLLAVLLLLLLVAPCLNCLEAVKKPPPVAFKVMCLLPITIL"
170 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc 170 301 tctgctcttg ctggtggcgc catgtctaaa ttgtttggag gcggtcaaaa agccgcctcc
171 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct 171 361 ggtggcattc aaggtgatgt gcttgctacc gataacaata ctgtaggcat gggtgatgct
172 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt 172 421 ggtattaaat ctgccattca aggctctaat gttcctaacc ctgatgaggc cgcccctagt
173 481 tttgtttctg 173 481 tttgtttctg
174 // 174 //
175 LOCUS contig6 1960 bp DNA linear 21-MAR-2017 175 LOCUS contig6 1960 bp DNA linear 27-MAR-2018
176 DEFINITION Genus species strain strain. 176 DEFINITION Genus species strain strain.
177 ACCESSION 177 ACCESSION
178 VERSION 178 VERSION
179 KEYWORDS . 179 KEYWORDS .
180 SOURCE Genus species 180 SOURCE Genus species
181 ORGANISM Genus species 181 ORGANISM Genus species
182 Unclassified. 182 Unclassified.
183 COMMENT Annotated using prokka 1.12 from 183 COMMENT Annotated using prokka 1.13 from
184 https://github.com/tseemann/prokka. 184 https://github.com/tseemann/prokka.
185 FEATURES Location/Qualifiers 185 FEATURES Location/Qualifiers
186 source 1..1960 186 source 1..1960
187 /organism="Genus species" 187 /organism="Genus species"
188 /mol_type="genomic DNA" 188 /mol_type="genomic DNA"
189 /strain="strain" 189 /strain="strain"
190 CDS 6..767 190 CDS 6..767
191 /locus_tag="PROKKA_00005" 191 /locus_tag="HMJLFLJH_00005"
192 /inference="ab initio prediction:Prodigal:2.6" 192 /inference="ab initio prediction:Prodigal:2.6"
193 /codon_start=1 193 /codon_start=1
194 /transl_table=11 194 /transl_table=11
195 /product="hypothetical protein" 195 /product="hypothetical protein"
196 /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD 196 /translation="MAKAGKGLLEGTLQAGTSAVSDKLLDLVGLGGKSAADKGKDTRD
231 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc 231 1741 gtatgcccat cgcagttcgc tacacgcagg acgctttttc acgttctggt tggttgtggc
232 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg 232 1801 ctgttgatgc taaaggtgag ccgcttaaag ctaccagtta tatggctgtt ggtttctatg
233 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta 233 1861 tggctaaata cgttaacaaa aagtcagata tggaccttgc tgctaaaggt ctaggagcta
234 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact 234 1921 aagaatggaa caactcacta aaaaccaagc tgtcgctact
235 // 235 //
236 LOCUS contig7 276 bp DNA linear 21-MAR-2017 236 LOCUS contig7 276 bp DNA linear 27-MAR-2018
237 DEFINITION Genus species strain strain. 237 DEFINITION Genus species strain strain.
238 ACCESSION 238 ACCESSION
239 VERSION 239 VERSION
240 KEYWORDS . 240 KEYWORDS .
241 SOURCE Genus species 241 SOURCE Genus species
242 ORGANISM Genus species 242 ORGANISM Genus species
243 Unclassified. 243 Unclassified.
244 COMMENT Annotated using prokka 1.12 from 244 COMMENT Annotated using prokka 1.13 from
245 https://github.com/tseemann/prokka. 245 https://github.com/tseemann/prokka.
246 FEATURES Location/Qualifiers 246 FEATURES Location/Qualifiers
247 source 1..276 247 source 1..276
248 /organism="Genus species" 248 /organism="Genus species"
249 /mol_type="genomic DNA" 249 /mol_type="genomic DNA"