Mercurial > repos > crs4 > sopra
view tool_dependencies.xml @ 0:988d5a82291a draft
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author | crs4 |
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date | Thu, 24 Oct 2013 14:02:10 -0400 |
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children | d180348fe9db |
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<?xml version="1.0"?> <tool_dependency> <!--<package name="bowtie" version="1.0.0"> <repository name="package_bowtie_1_0_0" owner="iuc" /> </package>--> <package name="sopra" version="1.4.6"> <install version="1.0"> <actions> <action type="download_by_url">http://www.physics.rutgers.edu/~anirvans/SOPRA/SOPRA_v1.4.6.zip</action> <action type="move_directory_files"> <source_directory>source_codes_v1.4.6/SOPRA_with_prebuilt_contigs</source_directory> <destination_directory>$INSTALL_DIR/SOPRA_with_prebuilt_contigs</destination_directory> </action> <action type="shell_command">chmod 755 $INSTALL_DIR/SOPRA_with_prebuilt_contigs/*.pl</action> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/SOPRA_with_prebuilt_contigs</environment_variable> </action> </actions> </install> </package> </tool_dependency>