Mercurial > repos > crs4 > sspace

diff tool_dependencies.xml @ 1:93fa7ecb5292 draft

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Directly call SSPACE, remove sspace.py and hidden library file output. Use $GALAXY_SLOTS instead of $SSPACE_SITE_OPTIONS. Add readme.rst .
author crs4
date Fri, 21 Feb 2014 04:17:55 -0500
parents b1be94418db9
children bc4451edb703
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Sep 17 09:41:18 2013 -0400
+++ b/tool_dependencies.xml	Fri Feb 21 04:17:55 2014 -0500
@@ -13,13 +13,10 @@
         <action type="set_environment">
           <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
         </action>
-        <action type="set_environment">
-          <environment_variable name="SSPACE_SITE_OPTIONS" action="set_to">"-T 1"</environment_variable>
-        </action>
       </actions>
     </install>
     <readme>
-Change the SSPACE_SITE_OPTIONS variable in the installed env.sh file to adjust the number of threads to use in Bowtie alignment (-T).
+Configuration: Previously (until Release 0), the SSPACE_SITE_OPTIONS variable in the installed env.sh file was used to adjust the number of threads to use in Bowtie alignment (-T). This is not used anymore and may be removed.
     </readme>
   </package>
 </tool_dependency>