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Fix missing requirement.
author crs4
date Mon, 27 Oct 2014 14:13:48 -0400
parents bc4451edb703
children
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<?xml version="1.0"?>
<tool_dependency>
  <package name="bowtie" version="1.0.0">
    <repository changeset_revision="9fcaaedbbfd6" name="package_bowtie_1_0_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" />
  </package>
  <package name="sspace" version="2.1">
    <install version="1.0">
      <actions>
        <action target_filename="sspace_basic-2.1.tar.gz" type="download_by_url">https://github.com/nsoranzo/sspace_basic/archive/v2.1.tar.gz</action>
        <action type="move_directory_files">
          <source_directory>.</source_directory>
          <destination_directory>$INSTALL_DIR</destination_directory>
        </action>
        <action type="set_environment">
          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
        </action>
      </actions>
    </install>
    <readme>
Configuration: Previously (until Release 0), the SSPACE_SITE_OPTIONS variable in the installed env.sh file was used to adjust the number of threads to use in Bowtie alignment (-T). This is not used anymore and may be removed.
    </readme>
  </package>
</tool_dependency>