Mercurial > repos > cstrittmatter > skesa

changeset 10:ddb2fec6cf7a draft

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Uploaded
author estrain
date Thu, 16 Aug 2018 13:58:32 -0400
parents 9e6af7620b3c
children 1b69d1441486
files skesa.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/skesa.xml	Thu Aug 16 13:54:18 2018 -0400
+++ b/skesa.xml	Thu Aug 16 13:58:32 2018 -0400
@@ -14,7 +14,7 @@
       #else if $jobtype.select == "pe"
 	--fastq $fastq1,$fastq2 --use_paired_ends
       #else if $jobtype.select == "rp"
-	--fastq $pairedfiles.forward,$pairedfiles.reverse --use_paired_ends
+	--fastq $pairedf{'forward'},$pairedf{'reverse'} --use_paired_ends
       #end if
       #if $cores != 0
       --cores $cores
@@ -50,7 +50,7 @@
               <param type="data_collection" name="collection_files" format="fastq" collection_type="list" label="FASTQS: Must be a Data Set list built from multiple fastq files" />
         </when>
          <when value="rp">
-              <param type="data_collection" collection_type="paired" name="pairedfiles" format="fastq" label="FASTQS: Must be a paired set of forward and reverse fastq files" />
+              <param type="data_collection" collection_type="paired" name="pairedf" format="fastq" label="FASTQS: Must be a paired set of forward and reverse fastq files" />
         </when>
       </conditional>
       <param name="memory" type="integer" label="Memory available (GB) [integer]" value="16" />