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planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
author cstrittmatter
date Tue, 28 Jan 2020 10:42:31 -0500
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2:6837f733b4aa 3:0cbed1c0a762
1 ---------------------------------------------------------------------
2 Changes included in 2020-01-06.1
3 ---------------------------------------------------------------------
4
5 This update includes backward incompatible changes to the AMRFinderPlus
6 database format. It is compatible with AMRFinderPlus version 3.6. To use
7 this database version please update to AMRFinderPlus version 3.6.
8 See https://github.com/ncbi/amr/wiki/Upgrading for how to upgrade and
9 https://github.com/evolarjun/amr/wiki/AMRFinderPlus-database for information
10 on the new database format.
11
12 Some highlights:
13
14 - Database format has changed to allow AMRFinderPlus to detect promoter mutations and small indels
15
16 - Many new point mutations, including Escherichia ampC promoter mutations, Klebsiella, and Enterococcus mutations
17
18 - Small improvements to many product names
19
20 - Improvements in class and subclass phenotype designations
21
22 - Modifications and additions of a few HMMs
23
24 - The usual addition of new alleles submitted to NCBI and others gleaned from the
25 literature
26
27
28
29 - Protein and point mutations:
30 Total in prev: 6443
31 Total in release: 6622
32 Removed: 0
33 Added: 184
34 Protein Added: ABV01310.1 ltcA heat-labile_enterotoxin_LT_subunit_A
35 Protein Added: ADE89421.1 sslE lipoprotein_metalloprotease_SslE
36 Protein Added: ASK37426.1 aar AggR-activated_transcriptional_regulator_Aar
37 Protein Added: BAB41547.1 mepA multidrug_efflux_MATE_transporter_MepA
38 Protein Added: WP_000378442.1 emrR multidrug_efflux_transporter_EmrAB_transcriptional_repressor_EmrR
39 Protein Added: WP_001132507.1 acrB multidrug_efflux_RND_transporter_permease_subunit_AcrB
40 Protein Added: WP_002289153.1 liaR response_regulator_transcription_factor_LiaR
41 Protein Added: WP_002289154.1 liaS sensor_histidine_kinase_LiaS
42 Protein Added: WP_002289473.1 cls cardiolipin_synthase_Cls
43 Protein Added: WP_002295408.1 liaF three-component_signaling_pathway_regulator_LiaF
44 Protein Added: WP_002355137.1 liaR response_regulator_transcription_factor_LiaR
45 Protein Added: WP_002356022.1 yybT cyclic_dinucleotide_phosphodiesterase_YybT
46 Protein Added: WP_002365182.1 liaS sensor_histidine_kinase_LiaS
47 Protein Added: WP_002371880.1 parC DNA_topoisomerase_IV_subunit_A_ParC
48 Protein Added: WP_002381168.1 liaF three-component_signaling_pathway_regulator_LiaF
49 Protein Added: WP_002389492.1 gshF bifunctional_glutamate--cysteine_ligase/glutathione_synthetase_GshF
50 Protein Added: WP_002413481.1 cls cardiolipin_synthase_Cls
51 Protein Added: WP_002895659.1 pmrA two-component_system_response_regulator_PmrA
52 Protein Added: WP_002911375.1:47:mgrB_W47R mgrB PhoP/PhoQ_regulator_MgrB
53 Protein Added: WP_004147969.1 phoQ two-component_system_sensor_histidine_kinase_PhoQ
54 Protein Added: WP_004150807.1 phoP two-component_system_response_regulator_PhoP
55 Protein Added: WP_004179093.1 pmrB two-component_system_sensor_histidine_kinase_PmrB
56 Protein Added: WP_004184324.1 crrB HAMP_domain-containing_histidine_kinase_CrrB
57 Protein Added: WP_014906821.1 arnC undecaprenyl-phosphate_4-deoxy-4-formamido-L-arabinose_transferase_ArnC
58 Protein Added: WP_033554192.1 parE DNA_topoisomerase_IV_subunit_B_ParE
59 Protein Added: WP_033785346.1 gyrA DNA_gyrase_subunit_A_GyrA
60 Protein Added: WP_048324114.1 blaOKP-B-45 class_A_broad-spectrum_beta-lactamase_OKP-B-45
61 Protein Added: WP_049003700.1 blaOKP-B-41 class_A_broad-spectrum_beta-lactamase_OKP-B-41
62 Protein Added: WP_057012521.1 blaPFM-2 subclass_B2_metallo-beta-lactamase_PFM-2
63 Protein Added: WP_060573544.1 blaACT-77 cephalosporin-hydrolyzing_class_C_beta-lactamase_ACT-77
64 Protein Added: WP_060655783.1 blaOKP-B-36 class_A_broad-spectrum_beta-lactamase_OKP-B-36
65 Protein Added: WP_064183695.1 blaOKP-B-16 class_A_broad-spectrum_beta-lactamase_OKP-B-16
66 Protein Added: WP_080897395.1 blaOKP-D-1 class_A_broad-spectrum_beta-lactamase_OKP-D-1
67 Protein Added: WP_086259262.1 acrB multidrug_efflux_RND_transporter_permease_subunit_AcrB
68 Protein Added: WP_087771722.1 blaOKP-B-34 class_A_broad-spectrum_beta-lactamase_OKP-B-34
69 Protein Added: WP_087833272.1 blaOKP-B-21 class_A_broad-spectrum_beta-lactamase_OKP-B-21
70 Protein Added: WP_100886243.1 blaOXA-895 OXA-229_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-895
71 Protein Added: WP_101982161.1 parC DNA_topoisomerase_IV_subunit_A_ParC
72 Protein Added: WP_114508147.1 blaOKP-B-40 class_A_broad-spectrum_beta-lactamase_OKP-B-40
73 Protein Added: WP_115256011.1 parC DNA_topoisomerase_IV_subunit_A_ParC
74 Protein Added: WP_117036963.1 gyrA DNA_gyrase_subunit_A_GyrA
75 Protein Added: WP_122543028.1 blaOKP-B-22 class_A_broad-spectrum_beta-lactamase_OKP-B-22
76 Protein Added: WP_125353308.1 qnrB96 quinolone_resistance_pentapeptide_repeat_protein_QnrB96
77 Protein Added: WP_130202201.1 blaVIM-69 subclass_B1_metallo-beta-lactamase_VIM-69
78 Protein Added: WP_131419583.1 blaTEM-238 class_A_beta-lactamase_TEM-238
79 Protein Added: WP_136034107.1 blaOKP-C-1 class_A_broad-spectrum_beta-lactamase_OKP-C-1
80 Protein Added: WP_137277832.1 gyrA DNA_gyrase_subunit_A_GyrA
81 Protein Added: WP_156404644.1 blaADC-221 class_C_beta-lactamase_ADC-221
82 Protein Added: WP_156404645.1 blaCMH-6 class_C_beta-lactamase_CMH-6
83 Protein Added: WP_156404646.1 blaCMY-168 class_C_beta-lactamase_CMY-168
84 Protein Added: WP_156404647.1 blaCMY-169 class_C_beta-lactamase_CMY-169
85 Protein Added: WP_156404648.1 blaCMY-170 class_C_beta-lactamase_CMY-170
86 Protein Added: WP_156404649.1 blaCTX-M-143 class_A_extended-spectrum_beta-lactamase_CTX-M-143
87 Protein Added: WP_156404650.1 blaCTX-M-230 class_A_extended-spectrum_beta-lactamase_CTX-M-230
88 Protein Added: WP_156404651.1 blaCTX-M-231 class_A_extended-spectrum_beta-lactamase_CTX-M-231
89 Protein Added: WP_156404652.1 blaCTX-M-232 class_A_extended-spectrum_beta-lactamase_CTX-M-232
90 Protein Added: WP_156404653.1 blaCTX-M-233 class_A_extended-spectrum_beta-lactamase_CTX-M-233
91 Protein Added: WP_156404654.1 blaMOX-14 CMY-1/MOX_family_class_C_beta-lactamase_MOX-14
92 Protein Added: WP_156404655.1 blaNDM-26 subclass_B1_metallo-beta-lactamase_NDM-26
93 Protein Added: WP_156404656.1 blaNDM-29 subclass_B1_metallo-beta-lactamase_NDM-29
94 Protein Added: WP_156404657.1 blaOKP-B-24 class_A_broad-spectrum_beta-lactamase_OKP-B-24
95 Protein Added: WP_156404658.1 blaOXA-896 class_D_beta-lactamase_OXA-896
96 Protein Added: WP_156404659.1 blaPER-14 class_A_extended-spectrum_beta-lactamase_PER-14
97 Protein Added: WP_156404660.1 blaPFM-3 subclass_B2_metallo-beta-lactamase_PFM-3
98 Protein Added: WP_156404661.1 blaSHV-115 class_A_extended-spectrum_beta-lactamase_SHV-115
99 Protein Added: WP_156404662.1 blaVEB-23 class_A_extended-spectrum_beta-lactamase_VEB-23
100 Protein Added: WP_156404663.1 blaVEB-24 class_A_extended-spectrum_beta-lactamase_VEB-24
101
102 Changes to existing protein and point mutation records:
103 Changed mepA accesssion: Q7A7N0.1 -> BAB41547.1
104 Changed ltcA accession: ABV01314.1 -> ABV01310.1
105 Changed aar accession: AVL28824.1 -> ASK37426.1
106 Changed reference sequence for Escherichia parE point mutations: WP_000195296.1 -> WP_033554192.1
107 Changed reference sequence for Escherichia acrB point mutations: WP_097509477.1 -> WP_086259262.1
108
109 16S_A1055G NC_000913.3
110 genbank_nucleotide_accession -> U00096.3
111 genbank_strand_orientation -> +
112 16S_A1408G NC_000913.3
113 genbank_nucleotide_accession -> U00096.3
114 genbank_strand_orientation -> +
115 subclass AMINOGLYCOSIDE -> GENTAMICIN C/NEOMYCIN/PAROMOMYCIN
116 16S_A1499G NC_000913.3
117 genbank_nucleotide_accession -> U00096.3
118 genbank_strand_orientation -> +
119 16S_A1519C NC_000913.3
120 genbank_nucleotide_accession -> U00096.3
121 genbank_strand_orientation -> +
122 16S_A1519G NC_000913.3
123 genbank_nucleotide_accession -> U00096.3
124 genbank_strand_orientation -> +
125 16S_A1519T NC_000913.3
126 genbank_nucleotide_accession -> U00096.3
127 genbank_strand_orientation -> +
128 16S_A523C NC_000913.3
129 genbank_nucleotide_accession -> U00096.3
130 genbank_strand_orientation -> +
131 16S_A794G NC_000913.3
132 genbank_nucleotide_accession -> U00096.3
133 genbank_strand_orientation -> +
134 16S_A794T NC_000913.3
135 genbank_nucleotide_accession -> U00096.3
136 genbank_strand_orientation -> +
137 16S_A964G NC_000913.3
138 genbank_nucleotide_accession -> U00096.3
139 genbank_strand_orientation -> +
140 16S_C1054T NC_000913.3
141 genbank_nucleotide_accession -> U00096.3
142 genbank_strand_orientation -> +
143 16S_C1065T NC_003197.2
144 genbank_nucleotide_accession -> AE006468.2
145 genbank_strand_orientation -> +
146 16S_C1066T NC_000913.3
147 genbank_nucleotide_accession -> U00096.3
148 genbank_strand_orientation -> +
149 16S_C1192T NC_000913.3
150 genbank_nucleotide_accession -> U00096.3
151 genbank_strand_orientation -> +
152 16S_C1192T NC_003197.2
153 genbank_nucleotide_accession -> AE006468.2
154 genbank_strand_orientation -> +
155 16S_C528T NC_000913.3
156 genbank_nucleotide_accession -> U00096.3
157 genbank_strand_orientation -> +
158 16S_G1053A NC_000913.3
159 genbank_nucleotide_accession -> U00096.3
160 genbank_strand_orientation -> +
161 16S_G1058C NC_000913.3
162 genbank_nucleotide_accession -> U00096.3
163 genbank_strand_orientation -> +
164 16S_G1064A NC_000913.3
165 genbank_nucleotide_accession -> U00096.3
166 genbank_strand_orientation -> +
167 subclass KANAMYCIN -> SPECTINOMYCIN
168 16S_G1064C NC_000913.3
169 genbank_nucleotide_accession -> U00096.3
170 genbank_strand_orientation -> +
171 16S_G1064T NC_000913.3
172 genbank_nucleotide_accession -> U00096.3
173 genbank_strand_orientation -> +
174 16S_G1068A NC_000913.3
175 genbank_nucleotide_accession -> U00096.3
176 genbank_strand_orientation -> +
177 16S_G527T NC_000913.3
178 genbank_nucleotide_accession -> U00096.3
179 genbank_strand_orientation -> +
180 16S_G926A NC_000913.3
181 genbank_nucleotide_accession -> U00096.3
182 genbank_strand_orientation -> +
183 16S_G926C NC_000913.3
184 genbank_nucleotide_accession -> U00096.3
185 genbank_strand_orientation -> +
186 16S_G926T NC_000913.3
187 genbank_nucleotide_accession -> U00096.3
188 genbank_strand_orientation -> +
189 16S_T1406A NC_000913.3
190 class AMINOGLYCOSIDE -> AMINGLYCOSIDE
191 genbank_nucleotide_accession -> U00096.3
192 genbank_strand_orientation -> +
193 subclass G418 -> G418/TOBRAMYCIN
194 23S_A2058G NC_004431.1
195 genbank_nucleotide_accession -> AE014075.1
196 genbank_strand_orientation -> +
197 subclass MACROLIDE -> AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN
198 23S_A2058T NC_004431.1
199 genbank_nucleotide_accession -> AE014075.1
200 genbank_strand_orientation -> +
201 subclass MACROLIDE -> AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN
202 23S_A2074C NC_002163.1
203 genbank_nucleotide_accession -> AL111168.1
204 genbank_strand_orientation -> +
205 23S_A2074G NC_002163.1
206 genbank_nucleotide_accession -> AL111168.1
207 genbank_strand_orientation -> +
208 23S_A2074T NC_002163.1
209 genbank_nucleotide_accession -> AL111168.1
210 genbank_strand_orientation -> +
211 23S_A2075G NC_002163.1
212 genbank_nucleotide_accession -> AL111168.1
213 genbank_strand_orientation -> +
214 23S_C2611T NC_004431.1
215 genbank_nucleotide_accession -> AE014075.1
216 genbank_strand_orientation -> +
217 subclass MACROLIDE -> ERYTHROMYCIN/TELITHROMYCIN
218 23S_C2627A NC_002163.1
219 genbank_nucleotide_accession -> AL111168.1
220 genbank_strand_orientation -> +
221 23S_G2032A NC_004431.1
222 class MACROLIDE/OXAZOLIDINONE -> LINCOSAMIDE/OXAZOLIDINONE
223 genbank_nucleotide_accession -> AE014075.1
224 genbank_strand_orientation -> +
225 subclass MACROLIDE/OXAZOLIDINONE -> CLINDAMYCIN/LINEZOLID
226 23S_G2032C NC_004431.1
227 genbank_nucleotide_accession -> AE014075.1
228 genbank_strand_orientation -> +
229 subclass OXAZOLIDINONE -> LINEZOLID
230 23S_G2032T NC_004431.1
231 genbank_nucleotide_accession -> AE014075.1
232 genbank_strand_orientation -> +
233 subclass MACROLIDE/OXAZOLIDINONE -> CLARITHROMYCIN/LINEZOLID
234 23S_G2057A NC_004431.1
235 class MACROLIDE/PHENICOL -> MULTIDRUG
236 genbank_nucleotide_accession -> AE014075.1
237 genbank_strand_orientation -> +
238 subclass MACROLIDE/CHLORAMPHENICOL -> CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN
239 23S_G2447T NC_004431.1
240 genbank_nucleotide_accession -> AE014075.1
241 genbank_strand_orientation -> +
242 subclass OXAZOLIDINONE -> LINEZOLID
243 23S_T754A NC_004431.1
244 genbank_nucleotide_accession -> AE014075.1
245 genbank_strand_orientation -> +
246 subclass MACROLIDE -> ERYTHROMYCIN/TELITHROMYCIN
247 50S_L22_A103C WP_002851214.1
248 genbank_protein_accession -> CAL35796.1
249 50S_L22_A103V WP_002779996.1
250 genbank_protein_accession -> AJW59082.1
251 50S_L22_A103V WP_002851214.1
252 genbank_protein_accession -> CAL35796.1
253 50S_L22_A84D WP_002779996.1
254 genbank_protein_accession -> AJW59082.1
255 50S_L22_A84D WP_002851214.1
256 genbank_protein_accession -> CAL35796.1
257 50S_L22_A88E WP_002779996.1
258 genbank_protein_accession -> AJW59082.1
259 50S_L22_A88E WP_002851214.1
260 genbank_protein_accession -> CAL35796.1
261 50S_L22_G86E WP_002779996.1
262 genbank_protein_accession -> AJW59082.1
263 50S_L22_G86E WP_002851214.1
264 genbank_protein_accession -> CAL35796.1
265 50S_L22_G86V WP_002779996.1
266 genbank_protein_accession -> AJW59082.1
267 50S_L22_G86V WP_002851214.1
268 genbank_protein_accession -> CAL35796.1
269 astA AAA20885.1
270 class VIRULENCE ->
271 subclass astA ->
272 arsB AAA21095.1
273 blacklisted_taxa Escherichia ->
274 arsC AAA21096.1
275 blacklisted_taxa Escherichia ->
276 arsB AAA25637.1
277 blacklisted_taxa Staphylococcus ->
278 arsB AAA27588.1
279 blacklisted_taxa Staphylococcus ->
280 arsC AAB09628.1
281 blacklisted_taxa Escherichia ->
282 ehxA AAC24352.1
283 product_name enterohemolysin -> enterohemolysin EhxA
284 astA AAD43578.1
285 class VIRULENCE ->
286 subclass astA ->
287 astA AAD43579.1
288 class VIRULENCE ->
289 subclass astA ->
290 astA AAM88299.1
291 class VIRULENCE ->
292 subclass astA ->
293 ehxA AAZ76497.1
294 product_name enterohemolysin -> enterohemolysin EhxA
295 ehxA ABQ02442.1
296 product_name enterohemolysin -> enterohemolysin EhxA
297 ehxA ABQ02443.1
298 product_name enterohemolysin -> enterohemolysin EhxA
299 ehxA ABQ02445.1
300 product_name enterohemolysin -> enterohemolysin EhxA
301 ehxA ABQ02447.1
302 product_name enterohemolysin -> enterohemolysin EhxA
303 ehxA ABQ02448.1
304 product_name enterohemolysin -> enterohemolysin EhxA
305 emrD3 ABQ18953.1
306 blacklisted_taxa Vibrio_cholerae ->
307 kdeA ABR76310.1
308 blacklisted_taxa Klebsiella ->
309 class -> EFFLUX
310 subclass -> EFFLUX
311 ehxA ACL51961.1
312 product_name enterohemolysin -> enterohemolysin EhxA
313 emrD ACN65732.1
314 class -> EFFLUX
315 subclass -> EFFLUX
316 amvA ACQ82816.1
317 class -> EFFLUX
318 subclass -> EFFLUX
319 astA ADI59685.1
320 class VIRULENCE ->
321 subclass astA ->
322 ehxA ADZ45128.1
323 product_name enterohemolysin -> enterohemolysin EhxA
324 asr BAA15331.2
325 blacklisted_taxa Escherichia ->
326 arsB BAA24823.1
327 blacklisted_taxa Escherichia ->
328 arsC BAA24824.1
329 blacklisted_taxa Escherichia, Klebsiella ->
330 ehxA BAA31774.1
331 product_name enterohemolysin -> enterohemolysin EhxA
332 fieF BAB89353.1
333 blacklisted_taxa Klebsiella ->
334 fieF BAE77395.1
335 blacklisted_taxa Escherichia, Salmonella ->
336 emrD BAE77620.1
337 blacklisted_taxa Escherichia ->
338 class -> EFFLUX
339 subclass -> EFFLUX
340 arsR BAE77793.1
341 blacklisted_taxa Escherichia ->
342 ehxA CAA63849.1
343 product_name enterohemolysin -> enterohemolysin EhxA
344 emrD EFF04178.1
345 class -> EFFLUX
346 subclass -> EFFLUX
347 silF KGL71342.1
348 product_name Ag(+)/Cu(+) efflux RND transporter periplasmic metallochaperone SilF -> Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone SilF
349 dfrA18 WP_001031075.1
350 product_name trimethoprim-resistant dihydrofolate reductase Dfr18 -> trimethoprim-resistant dihydrofolate reductase DfrA18
351 mphK WP_003246254.1
352 product_name macrolide 2'-phosphotransferase MphJ -> macrolide 2'-phosphotransferase MphK
353 blaOKP-B-6 WP_004205995.1
354 gene_family blaOKP -> blaOKP-B
355 ampC WP_006178946.1
356 product_name CMY2/MIR/ACT/EC family class c beta-lactamase -> CMY2/MIR/ACT/EC family class C beta-lactamase
357 blaOKP-B-8 WP_017900346.1
358 gene_family blaOKP -> blaOKP-B
359 blaOKP-A-17 WP_023289605.1
360 gene_family blaOKP -> blaOKP-A
361 blaOKP-B-23 WP_023318187.1
362 gene_family blaOKP -> blaOKP-B
363 blaOKP-A-2 WP_032452758.1
364 gene_family blaOKP -> blaOKP-A
365 blaOKP-B-1 WP_032456002.1
366 gene_family blaOKP -> blaOKP-B
367 blaPAC-1 WP_034051940.1
368 product_name class C beta-lactamase PAC-1 -> inhibitior-resistant cephalosporin-hydrolyzing class C beta-lactamase PAC-1
369 subclass BETA-LACTAM -> CEPHALOSPORIN
370 blaOKP-A-3 WP_044522859.1
371 gene_family blaOKP -> blaOKP-A
372 blaOKP-A-8 WP_048334865.1
373 gene_family blaOKP -> blaOKP-A
374 blaOKP-B-7 WP_057215100.1
375 gene_family blaOKP -> blaOKP-B
376 ampC WP_057991970.1
377 product_name class C beta-lactamase -> MCA family class C beta-lactamase
378 blaOKP-A-6 WP_060590773.1
379 gene_family blaOKP -> blaOKP-A
380 ampC WP_063406924.1
381 product_name CMY2/MIR/ACT/EC family class c beta-lactamase -> CMY2/MIR/ACT/EC family class C beta-lactamase
382 blaOKP-B WP_063842745.1
383 gene_family blaOKP -> blaOKP-B
384 blaOKP-A-1 WP_063860896.1
385 gene_family blaOKP -> blaOKP-A
386 blaOKP-A-10 WP_063860897.1
387 gene_family blaOKP -> blaOKP-A
388 blaOKP-A-11 WP_063860898.1
389 gene_family blaOKP -> blaOKP-A
390 blaOKP-A-12 WP_063860899.1
391 gene_family blaOKP -> blaOKP-A
392 blaOKP-A-13 WP_063860900.1
393 gene_family blaOKP -> blaOKP-A
394 blaOKP-A-14 WP_063860901.1
395 gene_family blaOKP -> blaOKP-A
396 blaOKP-A-15 WP_063860902.1
397 gene_family blaOKP -> blaOKP-A
398 blaOKP-A-16 WP_063860903.1
399 gene_family blaOKP -> blaOKP-A
400 blaOKP-A-4 WP_063860904.1
401 gene_family blaOKP -> blaOKP-A
402 blaOKP-A-5 WP_063860905.1
403 gene_family blaOKP -> blaOKP-A
404 blaOKP-A-7 WP_063860906.1
405 gene_family blaOKP -> blaOKP-A
406 blaOKP-A-9 WP_063860907.1
407 gene_family blaOKP -> blaOKP-A
408 blaOKP-B-10 WP_063860908.1
409 gene_family blaOKP -> blaOKP-B
410 blaOKP-B-11 WP_063860909.1
411 gene_family blaOKP -> blaOKP-B
412 blaOKP-B-13 WP_063860910.1
413 gene_family blaOKP -> blaOKP-B
414 blaOKP-B-17 WP_063860911.1
415 gene_family blaOKP -> blaOKP-B
416 blaOKP-B-18 WP_063860912.1
417 gene_family blaOKP -> blaOKP-B
418 blaOKP-B-19 WP_063860913.1
419 gene_family blaOKP -> blaOKP-B
420 blaOKP-B-2 WP_063860914.1
421 gene_family blaOKP -> blaOKP-B
422 blaOKP-B-20 WP_063860915.1
423 gene_family blaOKP -> blaOKP-B
424 blaOKP-B-3 WP_063860916.1
425 gene_family blaOKP -> blaOKP-B
426 blaOKP-B-4 WP_063860917.1
427 gene_family blaOKP -> blaOKP-B
428 blaOKP-B-5 WP_063860923.1
429 gene_family blaOKP -> blaOKP-B
430 blaOKP-B-9 WP_063860931.1
431 gene_family blaOKP -> blaOKP-B
432 icr-Mo WP_082741435.1
433 class -> COLISTIN
434 subclass -> COLISTIN
435 blaPDC-245 WP_100831609.1
436 product_name class C beta-lactamase PDC-245 -> inhibitor-resistant class C beta-lactamase PDC-245
437 blaPDC-270 WP_109791203.1
438 product_name class C beta-lactamase PDC-270 -> inhibitor-resistant class C beta-lactamase PDC-270
439 blaPDC-322 WP_138403314.1
440 product_name class C beta-lactamase PDC-322 -> inhibitor-resistant class C beta-lactamase PDC-322
441 blaKPC-41 WP_148044419.1
442 product_name carbapenem-hydrolyzing class A beta-lactamase KPC-41 -> inhibitor-resistant carbapenem-hydrolyzing class A beta-lactamase KPC-41
443 blaPDC-346 WP_148044438.1
444 product_name class C beta-lactamase PDC-346 -> inhibitor-resistant class C beta-lactamase PDC-346
445 blaPDC-381 WP_148044467.1
446 product_name class C beta-lactamase PDC-381 -> inhibitor-resistant class C beta-lactamase PDC-381
447 acrR_R45C WP_000101737.1
448 genbank_protein_accession -> AAC73566.1
449 product_name transcriptional regulator -> transcriptional regulator AcrR
450 basR_G15R WP_094970923.1
451 genbank_protein_accession -> OZX69954.1
452 basR_G53A WP_094970923.1
453 genbank_protein_accession -> OZX69954.1
454 basR_G53C WP_094970923.1
455 genbank_protein_accession -> OZX69954.1
456 basR_G53E WP_094970923.1
457 genbank_protein_accession -> OZX69954.1
458 basR_G53R WP_094970923.1
459 genbank_protein_accession -> OZX69954.1
460 basR_G53S WP_094970923.1
461 genbank_protein_accession -> OZX69954.1
462 basR_G53V WP_094970923.1
463 genbank_protein_accession -> OZX69954.1
464 basR_G53W WP_094970923.1
465 genbank_protein_accession -> OZX69954.1
466 basR_L105P WP_094970923.1
467 genbank_protein_accession -> OZX69954.1
468 basR_R81L WP_094970923.1
469 genbank_protein_accession -> OZX69954.1
470 basR_R81S WP_094970923.1
471 genbank_protein_accession -> OZX69954.1
472 basR_S39I WP_094970923.1
473 genbank_protein_accession -> OZX69954.1
474 cmeR_G86A WP_002843095.1
475 genbank_protein_accession -> EAH9016342.1
476 cyaA_S352T WP_000281668.1
477 genbank_protein_accession -> CDJ73082.1
478 product_name adenylate cyclase -> adenylate cyclase CyaA
479 fabG_Y151V WP_001718014.1
480 genbank_protein_accession -> EMW23334.1
481 product_name beta-ketoacyl-ACP reductase -> beta-ketoacyl-ACP reductase FabG
482 fabI_F203A WP_000506490.1
483 genbank_protein_accession -> AAC74370.1
484 fabI_F203C WP_000506490.1
485 genbank_protein_accession -> AAC74370.1
486 fabI_F203L WP_000506490.1
487 genbank_protein_accession -> AAC74370.1
488 fabI_G93A WP_000506490.1
489 genbank_protein_accession -> AAC74370.1
490 fabI_G93S WP_000506490.1
491 genbank_protein_accession -> AAC74370.1
492 fabI_G93V WP_000506490.1
493 genbank_protein_accession -> AAC74370.1
494 folP_P64A WP_000764731.1
495 genbank_protein_accession -> GDV24718.1
496 product_name dihydropteroate synthase -> dihydropteroate synthase FolP
497 folP_P64H WP_000764731.1
498 genbank_protein_accession -> GDV24718.1
499 product_name dihydropteroate synthase -> dihydropteroate synthase FolP
500 folP_P64L WP_000764731.1
501 genbank_protein_accession -> GDV24718.1
502 product_name dihydropteroate synthase -> dihydropteroate synthase FolP
503 folP_P64R WP_000764731.1
504 genbank_protein_accession -> GDV24718.1
505 product_name dihydropteroate synthase -> dihydropteroate synthase FolP
506 folP_P64S WP_000764731.1
507 genbank_protein_accession -> GDV24718.1
508 product_name dihydropteroate synthase -> dihydropteroate synthase FolP
509 gyrA_A119E WP_001281271.1
510 genbank_protein_accession -> EAB4993534.1
511 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
512 gyrA_A119S WP_001281271.1
513 genbank_protein_accession -> EAB4993534.1
514 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
515 gyrA_A119V WP_001281271.1
516 genbank_protein_accession -> EAB4993534.1
517 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
518 gyrA_A131G WP_001281271.1
519 genbank_protein_accession -> EAB4993534.1
520 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
521 gyrA_A196E WP_001281243.1
522 genbank_protein_accession -> AXO84158.1
523 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
524 gyrA_A51V WP_001281243.1
525 genbank_protein_accession -> AXO84158.1
526 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
527 gyrA_A67P WP_001281271.1
528 genbank_protein_accession -> EAB4993534.1
529 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
530 gyrA_A67S WP_001281243.1
531 genbank_protein_accession -> AXO84158.1
532 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
533 gyrA_A70T WP_002857904.1
534 genbank_protein_accession -> CAL35145.1
535 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
536 gyrA_A84P WP_001281243.1
537 genbank_protein_accession -> AXO84158.1
538 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
539 gyrA_A84V WP_001281243.1
540 genbank_protein_accession -> AXO84158.1
541 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
542 gyrA_D72G WP_001281271.1
543 genbank_protein_accession -> EAB4993534.1
544 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
545 gyrA_D82G WP_001281243.1
546 genbank_protein_accession -> AXO84158.1
547 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
548 gyrA_D82G WP_001281271.1
549 genbank_protein_accession -> EAB4993534.1
550 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
551 gyrA_D82N WP_001281271.1
552 genbank_protein_accession -> EAB4993534.1
553 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
554 gyrA_D85Y WP_002857904.1
555 genbank_protein_accession -> CAL35145.1
556 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
557 gyrA_D87G WP_001281243.1
558 genbank_protein_accession -> AXO84158.1
559 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
560 gyrA_D87G WP_001281271.1
561 genbank_protein_accession -> EAB4993534.1
562 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
563 gyrA_D87H WP_001281243.1
564 genbank_protein_accession -> AXO84158.1
565 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
566 gyrA_D87K WP_001281271.1
567 genbank_protein_accession -> EAB4993534.1
568 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
569 gyrA_D87N WP_001281243.1
570 genbank_protein_accession -> AXO84158.1
571 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
572 gyrA_D87N WP_001281271.1
573 genbank_protein_accession -> EAB4993534.1
574 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
575 gyrA_D87V WP_001281243.1
576 genbank_protein_accession -> AXO84158.1
577 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
578 gyrA_D87Y WP_001281243.1
579 genbank_protein_accession -> AXO84158.1
580 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
581 gyrA_D87Y WP_001281271.1
582 genbank_protein_accession -> EAB4993534.1
583 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
584 gyrA_D90A WP_002857904.1
585 genbank_protein_accession -> CAL35145.1
586 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
587 gyrA_D90N WP_002779062.1
588 genbank_protein_accession -> AJW58405.1
589 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
590 gyrA_D90N WP_002857904.1
591 genbank_protein_accession -> CAL35145.1
592 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
593 gyrA_D90T WP_002857904.1
594 genbank_protein_accession -> CAL35145.1
595 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
596 gyrA_D90Y WP_002779062.1
597 genbank_protein_accession -> AJW58405.1
598 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
599 gyrA_D90Y WP_002857904.1
600 genbank_protein_accession -> CAL35145.1
601 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
602 gyrA_E139A WP_001281271.1
603 genbank_protein_accession -> EAB4993534.1
604 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
605 gyrA_G81C WP_001281243.1
606 genbank_protein_accession -> AXO84158.1
607 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
608 gyrA_G81C WP_001281271.1
609 genbank_protein_accession -> EAB4993534.1
610 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
611 gyrA_G81D WP_001281271.1
612 genbank_protein_accession -> EAB4993534.1
613 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
614 gyrA_G81H WP_001281271.1
615 genbank_protein_accession -> EAB4993534.1
616 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
617 gyrA_G81S WP_001281271.1
618 genbank_protein_accession -> EAB4993534.1
619 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
620 gyrA_H80P WP_001281243.1
621 genbank_protein_accession -> AXO84158.1
622 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
623 gyrA_L98V WP_001281271.1
624 genbank_protein_accession -> EAB4993534.1
625 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
626 gyrA_N57K WP_001281243.1
627 genbank_protein_accession -> AXO84158.1
628 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
629 gyrA_P104S WP_002779062.1
630 genbank_protein_accession -> AJW58405.1
631 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
632 gyrA_P104S WP_002857904.1
633 genbank_protein_accession -> CAL35145.1
634 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
635 gyrA_Q106H WP_001281243.1
636 genbank_protein_accession -> AXO84158.1
637 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
638 gyrA_Q106R WP_001281243.1
639 genbank_protein_accession -> AXO84158.1
640 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
641 gyrA_S83A WP_001281243.1
642 genbank_protein_accession -> AXO84158.1
643 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
644 gyrA_S83A WP_001281271.1
645 genbank_protein_accession -> EAB4993534.1
646 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
647 gyrA_S83F WP_001281243.1
648 genbank_protein_accession -> AXO84158.1
649 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
650 gyrA_S83F WP_001281271.1
651 genbank_protein_accession -> EAB4993534.1
652 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
653 gyrA_S83I WP_001281243.1
654 genbank_protein_accession -> AXO84158.1
655 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
656 gyrA_S83L WP_001281243.1
657 genbank_protein_accession -> AXO84158.1
658 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
659 gyrA_S83V WP_001281243.1
660 genbank_protein_accession -> AXO84158.1
661 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
662 gyrA_S83W WP_001281243.1
663 genbank_protein_accession -> AXO84158.1
664 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
665 gyrA_S83Y WP_001281271.1
666 genbank_protein_accession -> EAB4993534.1
667 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
668 gyrA_S97P WP_001281271.1
669 genbank_protein_accession -> EAB4993534.1
670 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
671 gyrA_T86A WP_002779062.1
672 genbank_protein_accession -> AJW58405.1
673 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
674 gyrA_T86A WP_002857904.1
675 genbank_protein_accession -> CAL35145.1
676 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
677 gyrA_T86I WP_002779062.1
678 genbank_protein_accession -> AJW58405.1
679 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
680 gyrA_T86I WP_002857904.1
681 genbank_protein_accession -> CAL35145.1
682 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
683 gyrA_T86K WP_002779062.1
684 genbank_protein_accession -> AJW58405.1
685 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
686 gyrA_T86K WP_002857904.1
687 genbank_protein_accession -> CAL35145.1
688 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
689 gyrA_T86V WP_002779062.1
690 genbank_protein_accession -> AJW58405.1
691 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
692 gyrA_T86V WP_002857904.1
693 genbank_protein_accession -> CAL35145.1
694 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
695 gyrA_V73I WP_001281271.1
696 genbank_protein_accession -> EAB4993534.1
697 product_name DNA gyrase subunit A -> DNA gyrase subunit A GyrA
698 gyrB_D426N WP_000072067.1
699 genbank_protein_accession -> BAE77595.1
700 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
701 gyrB_E466D WP_000072047.1
702 genbank_protein_accession -> AHP21689.1
703 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
704 gyrB_K447E WP_000072067.1
705 genbank_protein_accession -> BAE77595.1
706 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
707 subclass QUINOLONE -> NALIDIXIC ACID
708 gyrB_R136C WP_000072067.1
709 genbank_protein_accession -> BAE77595.1
710 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
711 gyrB_R136E WP_000072067.1
712 genbank_protein_accession -> BAE77595.1
713 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
714 gyrB_R136G WP_000072067.1
715 genbank_protein_accession -> BAE77595.1
716 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
717 gyrB_R136H WP_000072067.1
718 genbank_protein_accession -> BAE77595.1
719 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
720 gyrB_R136I WP_000072067.1
721 genbank_protein_accession -> BAE77595.1
722 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
723 gyrB_R136L WP_000072067.1
724 genbank_protein_accession -> BAE77595.1
725 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
726 gyrB_R136S WP_000072067.1
727 genbank_protein_accession -> BAE77595.1
728 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
729 gyrB_R438L WP_000072047.1
730 genbank_protein_accession -> AHP21689.1
731 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
732 gyrB_S464F WP_000072047.1
733 genbank_protein_accession -> AHP21689.1
734 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
735 subclass QUINOLONE -> CIPROFLOXACIN
736 gyrB_S464Y WP_000072047.1
737 genbank_protein_accession -> AHP21689.1
738 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
739 subclass QUINOLONE -> CIPROFLOXACIN
740 gyrB_Y421C WP_000072047.1
741 genbank_protein_accession -> AHP21689.1
742 product_name DNA topoisomerase (ATP-hydrolyzing) subunit B -> DNA topoisomerase (ATP-hydrolyzing) subunit B GyrB
743 lon_P403L WP_001295325.1
744 genbank_protein_accession -> EQY31068.1
745 marR_A70T WP_000843414.1
746 genbank_protein_accession -> AAC74603.2
747 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
748 marR_E31STOP WP_000843414.1
749 genbank_protein_accession -> AAC74603.2
750 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
751 marR_I49S WP_000843414.1
752 genbank_protein_accession -> AAC74603.2
753 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
754 marR_L78M WP_000843414.1
755 genbank_protein_accession -> AAC74603.2
756 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
757 marR_R73C WP_000843414.1
758 genbank_protein_accession -> AAC74603.2
759 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
760 marR_R73S WP_000843414.1
761 genbank_protein_accession -> AAC74603.2
762 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
763 marR_R77C WP_000843414.1
764 genbank_protein_accession -> AAC74603.2
765 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
766 marR_R77L WP_000843414.1
767 genbank_protein_accession -> AAC74603.2
768 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
769 marR_R94H WP_000843414.1
770 genbank_protein_accession -> AAC74603.2
771 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
772 marR_R94S WP_000843414.1
773 genbank_protein_accession -> AAC74603.2
774 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
775 marR_S3N WP_000843414.1
776 genbank_protein_accession -> AAC74603.2
777 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
778 marR_V45E WP_000843414.1
779 genbank_protein_accession -> AAC74603.2
780 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
781 marR_V96E WP_000843414.1
782 genbank_protein_accession -> AAC74603.2
783 product_name MarR family transcriptional regulator -> transcriptional regulator MarR
784 murA_C115D WP_000357259.1
785 genbank_protein_accession -> AIL15701.1
786 product_name UDP-N-acetylglucosamine 1-carboxyvinyltransferase -> UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA
787 murA_C115E WP_000357259.1
788 genbank_protein_accession -> AIL15701.1
789 product_name UDP-N-acetylglucosamine 1-carboxyvinyltransferase -> UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA
790 murA_C115S WP_000357259.1
791 genbank_protein_accession -> AIL15701.1
792 product_name UDP-N-acetylglucosamine 1-carboxyvinyltransferase -> UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA
793 murA_D396N WP_000357259.1
794 genbank_protein_accession -> AIL15701.1
795 product_name UDP-N-acetylglucosamine 1-carboxyvinyltransferase -> UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA
796 murA_L370I WP_000357259.1
797 genbank_protein_accession -> AIL15701.1
798 product_name UDP-N-acetylglucosamine 1-carboxyvinyltransferase -> UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA
799 nfsA_G131D WP_089631889.1
800 genbank_protein_accession -> OYN67948.1
801 subclass NITROFURAN -> NITROFURANTOIN
802 nfsA_K141STOP WP_089631889.1
803 genbank_protein_accession -> OYN67948.1
804 subclass NITROFURAN -> NITROFURANTOIN
805 nfsA_Q44STOP WP_089631889.1
806 genbank_protein_accession -> OYN67948.1
807 subclass NITROFURAN -> NITROFURANTOIN
808 nfsA_R133S WP_089631889.1
809 genbank_protein_accession -> OYN67948.1
810 subclass NITROFURAN -> NITROFURANTOIN
811 nfsA_R15C WP_089631889.1
812 genbank_protein_accession -> OYN67948.1
813 subclass NITROFURAN -> NITROFURANTOIN
814 nfsA_R203C WP_089631889.1
815 genbank_protein_accession -> OYN67948.1
816 subclass NITROFURAN -> NITROFURANTOIN
817 nfsA_R203L WP_089631889.1
818 genbank_protein_accession -> OYN67948.1
819 subclass NITROFURAN -> NITROFURANTOIN
820 nfsA_S33R WP_089631889.1
821 genbank_protein_accession -> OYN67948.1
822 subclass NITROFURAN -> NITROFURANTOIN
823 ompF_G141D WP_000977920.1
824 genbank_protein_accession -> AAC74015.1
825 product_name outer membrane protein F -> outer membrane protein F OmpF
826 ompF_G141E WP_000977920.1
827 genbank_protein_accession -> AAC74015.1
828 product_name outer membrane protein F -> outer membrane protein F OmpF
829 parC_A108T WP_001281881.1
830 genbank_protein_accession -> AAC76055.1
831 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
832 parC_A108V WP_001281881.1
833 genbank_protein_accession -> AAC76055.1
834 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
835 parC_A56T WP_001281881.1
836 genbank_protein_accession -> AAC76055.1
837 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
838 parC_A85T WP_001281881.1
839 genbank_protein_accession -> AAC76055.1
840 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
841 parC_D111H WP_001281881.1
842 genbank_protein_accession -> AAC76055.1
843 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
844 parC_E84A WP_001281881.1
845 genbank_protein_accession -> AAC76055.1
846 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
847 parC_E84G WP_001281881.1
848 genbank_protein_accession -> AAC76055.1
849 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
850 parC_E84G WP_001281910.1
851 genbank_protein_accession -> EAW2725281.1
852 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
853 parC_E84K WP_001281881.1
854 genbank_protein_accession -> AAC76055.1
855 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
856 parC_E84K WP_001281910.1
857 genbank_protein_accession -> EAW2725281.1
858 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
859 parC_E84V WP_001281881.1
860 genbank_protein_accession -> AAC76055.1
861 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
862 parC_F60I WP_001281881.1
863 genbank_protein_accession -> AAC76055.1
864 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
865 parC_F60L WP_001281881.1
866 genbank_protein_accession -> AAC76055.1
867 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
868 parC_G78D WP_001281881.1
869 genbank_protein_accession -> AAC76055.1
870 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
871 parC_G78D WP_001281910.1
872 genbank_protein_accession -> EAW2725281.1
873 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
874 parC_G78K WP_001281881.1
875 genbank_protein_accession -> AAC76055.1
876 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
877 parC_S129P WP_001281881.1
878 genbank_protein_accession -> AAC76055.1
879 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
880 parC_S57T WP_001281881.1
881 genbank_protein_accession -> AAC76055.1
882 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
883 parC_S80F WP_001281881.1
884 genbank_protein_accession -> AAC76055.1
885 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
886 parC_S80I WP_001281881.1
887 genbank_protein_accession -> AAC76055.1
888 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
889 parC_S80I WP_001281910.1
890 genbank_protein_accession -> EAW2725281.1
891 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
892 parC_S80L WP_001281881.1
893 genbank_protein_accession -> AAC76055.1
894 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
895 parC_S80R WP_001281881.1
896 genbank_protein_accession -> AAC76055.1
897 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
898 parC_S80R WP_001281910.1
899 genbank_protein_accession -> EAW2725281.1
900 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
901 parC_S80Y WP_001281881.1
902 genbank_protein_accession -> AAC76055.1
903 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
904 parC_T66I WP_001281910.1
905 genbank_protein_accession -> EAW2725281.1
906 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
907 parC_W106G WP_001281910.1
908 genbank_protein_accession -> EAW2725281.1
909 product_name DNA topoisomerase IV subunit A -> DNA topoisomerase IV subunit A ParC
910 parE_A499T WP_000195318.1
911 genbank_protein_accession -> ATQ05934.1
912 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
913 parE_E454G WP_000195318.1
914 genbank_protein_accession -> ATQ05934.1
915 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
916 parE_H462Y WP_000195318.1
917 genbank_protein_accession -> ATQ05934.1
918 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
919 parE_M438I WP_000195318.1
920 genbank_protein_accession -> ATQ05934.1
921 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
922 parE_S458P WP_000195318.1
923 genbank_protein_accession -> ATQ05934.1
924 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
925 parE_V461G WP_000195318.1
926 genbank_protein_accession -> ATQ05934.1
927 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
928 parE_V514G WP_000195318.1
929 genbank_protein_accession -> ATQ05934.1
930 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
931 parE_V521F WP_000195318.1
932 genbank_protein_accession -> ATQ05934.1
933 product_name DNA topoisomerase IV subunit B -> DNA topoisomerase IV subunit B ParE
934 pmrA_G15R WP_000697899.1
935 genbank_protein_accession -> EAB2345955.1
936 pmrA_G53E WP_000697899.1
937 genbank_protein_accession -> EAB2345955.1
938 pmrA_G53R WP_000697899.1
939 genbank_protein_accession -> EAB2345955.1
940 pmrA_R81C WP_000697899.1
941 genbank_protein_accession -> EAB2345955.1
942 pmrA_R81H WP_000697899.1
943 genbank_protein_accession -> EAB2345955.1
944 pmrB_A159P WP_001300761.1
945 genbank_protein_accession -> KHH69629.1
946 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
947 pmrB_A159V WP_001300761.1
948 genbank_protein_accession -> KHH69629.1
949 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
950 pmrB_C84R WP_001300761.1
951 genbank_protein_accession -> KHH69629.1
952 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
953 pmrB_C84Y WP_001300761.1
954 genbank_protein_accession -> KHH69629.1
955 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
956 pmrB_E121A WP_001212189.1
957 genbank_protein_accession -> EAM5131532.1
958 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
959 pmrB_E121K WP_001300761.1
960 genbank_protein_accession -> KHH69629.1
961 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
962 pmrB_E121Q WP_001300761.1
963 genbank_protein_accession -> KHH69629.1
964 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
965 pmrB_E166K WP_001212189.1
966 genbank_protein_accession -> EAM5131532.1
967 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
968 pmrB_E166K WP_001300761.1
969 genbank_protein_accession -> KHH69629.1
970 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
971 pmrB_G206D WP_001300761.1
972 genbank_protein_accession -> KHH69629.1
973 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
974 pmrB_G206R WP_001212189.1
975 genbank_protein_accession -> EAM5131532.1
976 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
977 pmrB_G206W WP_001212189.1
978 genbank_protein_accession -> EAM5131532.1
979 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
980 pmrB_L10P WP_001300761.1
981 genbank_protein_accession -> KHH69629.1
982 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
983 pmrB_L10R WP_001300761.1
984 genbank_protein_accession -> KHH69629.1
985 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
986 pmrB_L14F WP_001212189.1
987 genbank_protein_accession -> EAM5131532.1
988 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
989 pmrB_L14R WP_001300761.1
990 genbank_protein_accession -> KHH69629.1
991 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
992 pmrB_L14S WP_001212189.1
993 genbank_protein_accession -> EAM5131532.1
994 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
995 pmrB_L22P WP_001212189.1
996 genbank_protein_accession -> EAM5131532.1
997 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
998 pmrB_M186I WP_001212189.1
999 genbank_protein_accession -> EAM5131532.1
1000 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1001 pmrB_N130Y WP_001212189.1
1002 genbank_protein_accession -> EAM5131532.1
1003 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1004 pmrB_P94L WP_001300761.1
1005 genbank_protein_accession -> KHH69629.1
1006 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1007 pmrB_P94Q WP_001212189.1
1008 genbank_protein_accession -> EAM5131532.1
1009 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1010 pmrB_P94Q WP_001300761.1
1011 genbank_protein_accession -> KHH69629.1
1012 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1013 pmrB_P94S WP_001300761.1
1014 genbank_protein_accession -> KHH69629.1
1015 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1016 pmrB_R155P WP_001212189.1
1017 genbank_protein_accession -> EAM5131532.1
1018 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1019 pmrB_S124P WP_001212189.1
1020 genbank_protein_accession -> EAM5131532.1
1021 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1022 pmrB_S29R WP_001212189.1
1023 genbank_protein_accession -> EAM5131532.1
1024 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1025 pmrB_S305R WP_001212189.1
1026 genbank_protein_accession -> EAM5131532.1
1027 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1028 pmrB_T147A WP_001300761.1
1029 genbank_protein_accession -> KHH69629.1
1030 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1031 pmrB_T147P WP_001212189.1
1032 genbank_protein_accession -> EAM5131532.1
1033 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1034 pmrB_T156M WP_001212189.1
1035 genbank_protein_accession -> EAM5131532.1
1036 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1037 pmrB_T156M WP_001300761.1
1038 genbank_protein_accession -> KHH69629.1
1039 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1040 pmrB_T156P WP_001212189.1
1041 genbank_protein_accession -> EAM5131532.1
1042 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1043 pmrB_T92A WP_001212189.1
1044 genbank_protein_accession -> EAM5131532.1
1045 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1046 pmrB_V161G WP_001212189.1
1047 genbank_protein_accession -> EAM5131532.1
1048 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1049 pmrB_V161G WP_001300761.1
1050 genbank_protein_accession -> KHH69629.1
1051 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1052 pmrB_V161L WP_001212189.1
1053 genbank_protein_accession -> EAM5131532.1
1054 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1055 pmrB_V161M WP_001212189.1
1056 genbank_protein_accession -> EAM5131532.1
1057 product_name two-component sensor histidine kinase -> two-component system sensor histidine kinase PmrB
1058 ptsI_V25I WP_000623140.1
1059 genbank_protein_accession -> CDJ72759.1
1060 product_name phosphoenolpyruvate--protein phosphotransferase -> phosphoenolpyruvate--protein phosphotransferase PtsI
1061 ramR_E160D WP_000113609.1
1062 genbank_protein_accession -> ACH50230.1
1063 product_name TetR/AcrR family transcriptional regulator -> TetR/AcrR family transcriptional regulator RamR
1064 ramR_G25A WP_000113609.1
1065 genbank_protein_accession -> ACH50230.1
1066 product_name TetR/AcrR family transcriptional regulator -> TetR/AcrR family transcriptional regulator RamR
1067 ramR_M84I WP_000113609.1
1068 genbank_protein_accession -> ACH50230.1
1069 product_name TetR/AcrR family transcriptional regulator -> TetR/AcrR family transcriptional regulator RamR
1070 ramR_R46P WP_000113609.1
1071 genbank_protein_accession -> ACH50230.1
1072 product_name TetR/AcrR family transcriptional regulator -> TetR/AcrR family transcriptional regulator RamR
1073 ramR_T18P WP_000113609.1
1074 genbank_protein_accession -> ACH50230.1
1075 product_name TetR/AcrR family transcriptional regulator -> TetR/AcrR family transcriptional regulator RamR
1076 ramR_T50P WP_000113609.1
1077 genbank_protein_accession -> ACH50230.1
1078 product_name TetR/AcrR family transcriptional regulator -> TetR/AcrR family transcriptional regulator RamR
1079 ramR_Y59H WP_000113609.1
1080 genbank_protein_accession -> ACH50230.1
1081 product_name TetR/AcrR family transcriptional regulator -> TetR/AcrR family transcriptional regulator RamR
1082 rpoB_H526Y WP_000263098.1
1083 genbank_protein_accession -> CSN35596.1
1084 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1085 rpoB_L533P WP_000263098.1
1086 genbank_protein_accession -> CSN35596.1
1087 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1088 rpoB_P564L WP_000263098.1
1089 genbank_protein_accession -> CSN35596.1
1090 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1091 rpoB_Q513L WP_000263098.1
1092 genbank_protein_accession -> CSN35596.1
1093 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1094 rpoB_Q513P WP_000263098.1
1095 genbank_protein_accession -> CSN35596.1
1096 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1097 rpoB_R529C WP_000263098.1
1098 genbank_protein_accession -> CSN35596.1
1099 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1100 rpoB_R529S WP_000263098.1
1101 genbank_protein_accession -> CSN35596.1
1102 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1103 rpoB_R687H WP_000263098.1
1104 genbank_protein_accession -> CSN35596.1
1105 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1106 rpoB_S531F WP_000263098.1
1107 genbank_protein_accession -> CSN35596.1
1108 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1109 rpoB_T563P WP_000263098.1
1110 genbank_protein_accession -> CSN35596.1
1111 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1112 rpoB_V146F WP_000263098.1
1113 genbank_protein_accession -> CSN35596.1
1114 product_name DNA-directed RNA polymerase subunit beta -> DNA-directed RNA polymerase subunit beta RpoB
1115 rpsL_K43R WP_057042458.1
1116 genbank_protein_accession -> EAI0845362.1
1117 product_name 30S ribosomal protein S12 -> 30S ribosomal protein S12 RpsL
1118 rpsL_K88E WP_057042458.1
1119 genbank_protein_accession -> EAI0845362.1
1120 product_name 30S ribosomal protein S12 -> 30S ribosomal protein S12 RpsL
1121 rpsL_K88Q WP_057042458.1
1122 genbank_protein_accession -> EAI0845362.1
1123 product_name 30S ribosomal protein S12 -> 30S ribosomal protein S12 RpsL
1124 rpsL_K88R WP_057042458.1
1125 genbank_protein_accession -> EAI0845362.1
1126 product_name 30S ribosomal protein S12 -> 30S ribosomal protein S12 RpsL
1127 soxR_G121D WP_000412428.1
1128 genbank_protein_accession -> AAC77033.1
1129 soxR_G121D WP_000412686.1
1130 genbank_protein_accession -> CAD09250.1
1131 soxR_R20H WP_000412428.1
1132 genbank_protein_accession -> AAC77033.1
1133 soxR_R20H WP_000412686.1
1134 genbank_protein_accession -> CAD09250.1
1135 soxS_A12S WP_000019358.1
1136 genbank_protein_accession -> AAC77032.1
1137 soxS_E52K WP_000019483.1
1138 genbank_protein_accession -> AAL23089.1
1139 tufA_A376S WP_000031783.1
1140 genbank_protein_accession -> AAC76364.1
1141 tufA_A376T WP_000031783.1
1142 genbank_protein_accession -> AAC76364.1
1143 tufA_A376V WP_000031783.1
1144 genbank_protein_accession -> AAC76364.1
1145 tufA_E379K WP_000031783.1
1146 genbank_protein_accession -> AAC76364.1
1147 tufA_G317D WP_000031783.1
1148 genbank_protein_accession -> AAC76364.1
1149 tufA_L121Q WP_000031783.1
1150 genbank_protein_accession -> AAC76364.1
1151 tufA_Q125E WP_000031783.1
1152 genbank_protein_accession -> AAC76364.1
1153 tufA_Q125K WP_000031783.1
1154 genbank_protein_accession -> AAC76364.1
1155 tufA_Q125R WP_000031783.1
1156 genbank_protein_accession -> AAC76364.1
1157 tufA_Q330H WP_000031783.1
1158 genbank_protein_accession -> AAC76364.1
1159 tufA_R231C WP_000031783.1
1160 genbank_protein_accession -> AAC76364.1
1161 tufA_R231V WP_000031783.1
1162 genbank_protein_accession -> AAC76364.1
1163 tufA_R234F WP_000031783.1
1164 genbank_protein_accession -> AAC76364.1
1165 tufA_R234S WP_000031783.1
1166 genbank_protein_accession -> AAC76364.1
1167 tufA_R334C WP_000031783.1
1168 genbank_protein_accession -> AAC76364.1
1169 tufA_T335A WP_000031783.1
1170 genbank_protein_accession -> AAC76364.1
1171 tufA_Y161C WP_000031783.1
1172 genbank_protein_accession -> AAC76364.1
1173 tufA_Y161D WP_000031783.1
1174 genbank_protein_accession -> AAC76364.1
1175 tufA_Y161N WP_000031783.1
1176 genbank_protein_accession -> AAC76364.1
1177 uhpA_G97D WP_000633668.1
1178 genbank_protein_accession -> CDJ73205.1
1179 product_name DNA-binding response regulator -> DNA-binding response regulator UhpA
1180 uhpT_E350Q WP_000879194.1
1181 genbank_protein_accession -> CDJ73208.1
1182 product_name hexose phosphate transporter -> hexose phosphate transporter UhpT
1183
1184 - AMR HMM library Changes:
1185 Total: Added 2
1186 Total: Prev. Release 618
1187 Total: Removed 0
1188 Total: This Release 620
1189 HMM Added: NF037973.1 myrA-NCBI
1190 HMM Added: NF038003.1 blaPLA_ORN_TER-NCBI
1191 HMM Modified: NF000389.2 blaPLA_ORN_TER-NCBI updated to NF000389.2 blaPFM-NCBI
1192 HMM Modified: NF033560.1 myrA-NCBI updated to NF033560.1 metallo_SslE-NCBI
1193
1194 - Protein family changes:
1195 Total: Added 3
1196 Total: Prev. Release 1527
1197 Total: Removed 0
1198 Total: This Release 1530
1199 Family Added: - blaOKP-C
1200 Family Added: - blaOKP-D
1201 Family Added: NF037973.1 sslE
1202 Family Changed: - blaPFM updated to NF038003.1 blaPFM
1203
1204 ---------------------------------------------------------------------
1205 Changes included in 2019-10-30.1
1206 ---------------------------------------------------------------------
1207
1208 This update includes backward incompatible changes to the AMRFinderPlus
1209 database format. It is compatible with AMRFinderPlus version 3.2 and above.
1210 To use this database version please update to AMRFinderPlus version 3.2. See
1211 https://github.com/ncbi/amr/wiki/Upgrading for how to upgrade and
1212 https://github.com/evolarjun/amr/wiki/AMRFinderPlus-database for information
1213 on the new database format.
1214
1215 --organism / -O value Vibrio has been changed to Vibrio_cholerae because the
1216 blacklisted genes are common only in Vibrio_cholerae.
1217
1218 Two erronious proteins have been removed, several HMMs have been added, and
1219 many new AMR alleles and "plus" genes.
1220
1221 All HMM's have internal short names that have been changed to include a suffix
1222 to indicate the source (e.g., NCBI, Resfams, TIGRFAMs).
1223
1224 Class and subclass have been defined for some parent families where they were
1225 not before. These will only be visible in AMRFinderPlus results if there was a
1226 novel sequence classified by AMRFinder above the level of the gene included in
1227 the Reference Gene Catalog.
1228
1229 - Protein and point mutation changes:
1230 Total in prev: 6271
1231 Total in release: 6443
1232 Removed: 2
1233 Added: 174
1234 Changed: 42
1235 Removed ltcA CAA23532.1
1236 Removed sdeA EEZ94110.1
1237 Added bmaE AAA23523.1
1238 Added papG-II AAA24293.1
1239 Added focG AAB20438.1
1240 Added cdtA AAF81760.1
1241 Added ibeA AAF98391.2
1242 Added iutA AAN45165.2
1243 Added sdeA AAS55383.1
1244 Added emrD ACN65732.1
1245 Added tcdR AJP10335.1
1246 Added tcdB AJP10336.1
1247 Added tcdE AJP10337.1
1248 Added tcdA AJP10339.1
1249 Added tcdC AJP10340.1
1250 Added sfaF ASJ31253.1
1251 Added emrD BAE77620.1
1252 Added papG-III CAA43558.1
1253 Added papA CAA43562.1
1254 Added papH CAA43563.1
1255 Added papC CAA43564.1
1256 Added papE CAA43568.1
1257 Added papG-I CAA43570.1
1258 Added afaC CAA54117.1
1259 Added afaC CAW30799.1
1260 Added cdtB CBE05858.1
1261 Added emrD EFF04178.1
1262 Added sfaF EIL44824.1
1263 Added papA ENA25238.1
1264 Added cvaC P22522.1
1265 Added mepA Q7A7N0.1
1266 Added blaOXA-856 WP_001021774.1
1267 Added blaOXA-847 WP_010793618.1
1268 Added blaOXA-851 WP_014603442.1
1269 Added tva(B) WP_014936356.1
1270 Added blaOXA-848 WP_019485147.1
1271 Added mcr-10.1 WP_023332837.1
1272 Added blaADC-212 WP_031975357.1
1273 Added blaADC-203 WP_032000414.1
1274 Added blaOXA-855 WP_032061328.1
1275 Added blaACT-74 WP_032652275.1
1276 Added blaOXA-846 WP_033989974.1
1277 Added blaOXA-850 WP_034006563.1
1278 Added blaADC-215 WP_039098799.1
1279 Added blaADC-216 WP_039211240.1
1280 Added blaADC-219 WP_039213353.1
1281 Added blaAQU-1 WP_042888870.1
1282 Added blaLEN-32 WP_043875313.1
1283 Added blaACT-75 WP_045347148.1
1284 Added blaCMY-137 WP_053390271.1
1285 Added blaADC-214 WP_060454527.1
1286 Added blaADC-217 WP_060470109.1
1287 Added blaLEN-42 WP_061154665.1
1288 Added fosA8 WP_063277905.1
1289 Added blaLEN-34 WP_072124806.1
1290 Added blaLEN-43 WP_074385924.1
1291 Added blaADC-218 WP_078216190.1
1292 Added blaADC-213 WP_078230092.1
1293 Added blaLEN-30 WP_080923375.1
1294 Added blaAXC-3 WP_081330264.1
1295 Added blaOXA-842 WP_087088911.1
1296 Added blaADC-220 WP_087876534.1
1297 Added blaLEN-55 WP_094917017.1
1298 Added blaAXC-2 WP_100505522.1
1299 Added blaLEN-41 WP_100675621.1
1300 Added blaLEN-12 WP_110196444.1
1301 Added blaOXA-854 WP_114158997.1
1302 Added blaADC-199 WP_114166683.1
1303 Added blaOXA-853 WP_114252036.1
1304 Added blaLEN-58 WP_117122976.1
1305 Added blaLEN-51 WP_123836928.1
1306 Added blaACT-76 WP_126817982.1
1307 Added blaADC-207 WP_130173437.1
1308 Added blaADC-194 WP_133972424.1
1309 Added blaOXA-822 WP_133973918.1
1310 Added blaPDC-319 WP_134254706.1
1311 Added blaLEN-39 WP_136026639.1
1312 Added blaLEN-40 WP_136049560.1
1313 Added blaLEN-38 WP_136086342.1
1314 Added blaPDC-322 WP_138403314.1
1315 Added blaOXA-894 WP_144376393.1
1316 Added blaADC-197 WP_150823452.1
1317 Added blaADC-198 WP_150823453.1
1318 Added blaADC-200 WP_150823454.1
1319 Added blaADC-201 WP_150823455.1
1320 Added blaADC-202 WP_150823456.1
1321 Added blaADC-204 WP_150823457.1
1322 Added blaADC-205 WP_150823458.1
1323 Added blaADC-206 WP_150823459.1
1324 Added blaADC-208 WP_150823460.1
1325 Added blaADC-209 WP_150823461.1
1326 Added blaADC-210 WP_150823462.1
1327 Added blaADC-211 WP_150823463.1
1328 Added blaAXC-4 WP_150823464.1
1329 Added blaAXC-5 WP_150823465.1
1330 Added blaCARB-51 WP_150823466.1
1331 Added blaCARB-52 WP_150823467.1
1332 Added blaEBR-3 WP_150823468.1
1333 Added blaIMP-65 WP_150823469.1
1334 Added blaOXA-838 WP_150823470.1
1335 Added blaOXA-839 WP_150823471.1
1336 Added blaOXA-840 WP_150823472.1
1337 Added blaOXA-841 WP_150823473.1
1338 Added blaOXA-843 WP_150823474.1
1339 Added blaOXA-844 WP_150823475.1
1340 Added blaOXA-845 WP_150823476.1
1341 Added blaOXA-849 WP_150823477.1
1342 Added blaPDC-318 WP_150823478.1
1343 Added blaPDC-320 WP_150823479.1
1344 Added blaPDC-321 WP_150823480.1
1345 Added blaPDC-323 WP_150823481.1
1346 Added blaPDC-324 WP_150823482.1
1347 Added blaPDC-325 WP_150823483.1
1348 Added blaPDC-326 WP_150823484.1
1349 Added blaPDC-327 WP_150823485.1
1350 Added blaPDC-328 WP_150823486.1
1351 Added blaPDC-329 WP_150823487.1
1352 Added blaPDC-330 WP_150823488.1
1353 Added blaPDC-331 WP_150823489.1
1354 Added blaPDC-332 WP_150823490.1
1355 Added blaPDC-384 WP_150823491.1
1356 Added blaPDC-385 WP_150823492.1
1357 Added blaPDC-386 WP_150823493.1
1358 Added blaPST-2 WP_150823494.1
1359 Added blaTEM-240 WP_150823495.1
1360 Added mcr-3.28 WP_150823496.1
1361 Added mcr-8.3 WP_150823497.1
1362 Added tva(A) WP_151874537.1
1363 Added blaACT-73 WP_152315464.1
1364 Added blaIMP-85 WP_152315465.1
1365 Added blaMIR-23 WP_152315466.1
1366 Added blaNDM-25 WP_152315467.1
1367 Added blaOXA-830 WP_152315468.1
1368 Added blaOXA-852 WP_152315469.1
1369 Added blaOXA-857 WP_152315470.1
1370 Added blaOXA-858 WP_152315471.1
1371 Added blaOXA-859 WP_152315472.1
1372 Added blaOXA-860 WP_152315473.1
1373 Added blaOXA-861 WP_152315474.1
1374 Added blaOXA-862 WP_152315475.1
1375 Added blaOXA-863 WP_152315476.1
1376 Added blaOXA-864 WP_152315477.1
1377 Added blaOXA-865 WP_152315478.1
1378 Added blaOXA-866 WP_152315479.1
1379 Added blaOXA-867 WP_152315480.1
1380 Added blaOXA-868 WP_152315481.1
1381 Added blaOXA-869 WP_152315482.1
1382 Added blaOXA-870 WP_152315483.1
1383 Added blaOXA-871 WP_152315484.1
1384 Added blaOXA-872 WP_152315485.1
1385 Added blaOXA-873 WP_152315486.1
1386 Added blaOXA-874 WP_152315487.1
1387 Added blaOXA-875 WP_152315488.1
1388 Added blaOXA-876 WP_152315489.1
1389 Added blaOXA-877 WP_152315490.1
1390 Added blaOXA-878 WP_152315491.1
1391 Added blaOXA-879 WP_152315492.1
1392 Added blaOXA-880 WP_152315493.1
1393 Added blaOXA-881 WP_152315494.1
1394 Added blaOXA-882 WP_152315495.1
1395 Added blaOXA-883 WP_152315496.1
1396 Added blaOXA-884 WP_152315497.1
1397 Added blaOXA-885 WP_152315498.1
1398 Added blaOXA-886 WP_152315499.1
1399 Added blaOXA-887 WP_152315500.1
1400 Added blaOXA-888 WP_152315501.1
1401 Added blaOXA-889 WP_152315502.1
1402 Added blaOXA-890 WP_152315503.1
1403 Added blaOXA-891 WP_152315504.1
1404 Added blaOXA-892 WP_152315505.1
1405 Added blaPDC-387 WP_152315506.1
1406 Added blaPDC-388 WP_152315507.1
1407 Added blaLEN-35 WP_152330887.1
1408 Added blaLEN-36 WP_152330888.1
1409 Added blaLEN-37 WP_152330889.1
1410 Added blaSHV-4 WP_152330890.1
1411 Changes:
1412 arsB AAA21095.1
1413 blacklisted_taxa -> Escherichia
1414 arsC AAB09628.1
1415 blacklisted_taxa -> Escherichia
1416 ymgB AAC74250.1
1417 subclass ACID ->
1418 subtype BIOCIDE -> ACID
1419 emrD3 ABQ18953.1
1420 blacklisted_taxa Vibrio -> Vibrio_cholerae
1421 arsB BAA24823.1
1422 blacklisted_taxa -> Escherichia
1423 fieF BAB89353.1
1424 blacklisted_taxa -> Klebsiella
1425 aac(6')-I WP_002289795.1
1426 gene_family aac(6') -> aac(6')-I
1427 aac(6')-I WP_002293569.1
1428 gene_family aac(6') -> aac(6')-I
1429 aac(6')-I WP_002293989.1
1430 gene_family aac(6') -> aac(6')-I
1431 aac(6')-I WP_002328174.1
1432 gene_family aac(6') -> aac(6')-I
1433 aac(6')-I WP_002339746.1
1434 gene_family aac(6') -> aac(6')-I
1435 aac(6')-I WP_002373947.1
1436 gene_family aac(6') -> aac(6')-I
1437 aac(6')-Iih WP_005880220.1
1438 gene_family aac(6') -> aac(6')-I
1439 aac(6')-Ii WP_008265821.1
1440 gene_family aac(6') -> aac(6')-I
1441 aac(6')-Iid WP_010720790.1
1442 gene_family aac(6') -> aac(6')-I
1443 aac(6')-I WP_010723742.1
1444 gene_family aac(6') -> aac(6')-I
1445 aac(6')-I WP_010727362.1
1446 gene_family aac(6') -> aac(6')-I
1447 aac(6')-I WP_010728104.1
1448 gene_family aac(6') -> aac(6')-I
1449 aac(6')-I WP_010736157.1
1450 gene_family aac(6') -> aac(6')-I
1451 aac(6')-I WP_010737153.1
1452 gene_family aac(6') -> aac(6')-I
1453 aac(6')-I WP_010750427.1
1454 gene_family aac(6') -> aac(6')-I
1455 aac(6')-I WP_010752789.1
1456 gene_family aac(6') -> aac(6')-I
1457 aac(6')-I WP_010768325.1
1458 gene_family aac(6') -> aac(6')-I
1459 aac(6')-I WP_016172918.1
1460 gene_family aac(6') -> aac(6')-I
1461 aac(6')-I WP_016177698.1
1462 gene_family aac(6') -> aac(6')-I
1463 aac(6')-I WP_016628216.1
1464 gene_family aac(6') -> aac(6')-I
1465 aac(6')-I WP_019722502.1
1466 gene_family aac(6') -> aac(6')-I
1467 aac(6')-I WP_023519215.1
1468 gene_family aac(6') -> aac(6')-I
1469 aac(6')-I WP_024635824.1
1470 gene_family aac(6') -> aac(6')-I
1471 aac(6')-I WP_034688908.1
1472 gene_family aac(6') -> aac(6')-I
1473 aac(6')-I WP_034700626.1
1474 gene_family aac(6') -> aac(6')-I
1475 aac(6')-I WP_034860925.1
1476 gene_family aac(6') -> aac(6')-I
1477 blaOXA-252 WP_037428895.1
1478 curated_refseq_start Yes -> No
1479 genbank_cds_start 842113 -> 2724286
1480 genbank_cds_stop 842910 -> 2725083
1481 genbank_nucleotide_accession JTLE01000094.1 -> CP022089.2
1482 genbank_protein_accession -> ASF15667.1
1483 genbank_strand_orientation + -> -
1484 refseq_nucleotide_accession NG_050608.1 -> NG_066509.1
1485 aac(6')-I WP_048603867.1
1486 gene_family aac(6') -> aac(6')-I
1487 aac(6')-I WP_053766315.1
1488 gene_family aac(6') -> aac(6')-I
1489 blaOXA-539 WP_071593233.1
1490 product_name OXA-2 family class D extended-spectrum beta-lactamase OXA-539 -> OXA-2 family inhibitor-resistant class D extended-spectrum beta-lactamase OXA-539
1491 subclass BETA-LACTAM -> CEPHALOSPORIN
1492 lnu(F) WP_071846285.1
1493 allele linH2 ->
1494 aac(6')-I WP_071846353.1
1495 gene_family aac(6') -> aac(6')-I
1496 blaOXA-576 WP_087696200.1
1497 curated_refseq_start Yes -> No
1498 genbank_cds_start 843910 -> 1
1499 genbank_cds_stop 844656 -> 747
1500 genbank_nucleotide_accession NFPA01000015.1 -> MH085550.1
1501 genbank_protein_accession -> AWD39715.1
1502 refseq_nucleotide_accession NG_057458.1 -> NG_066510.1
1503 blaAQU WP_099156042.1
1504 allele blaAQU-1 ->
1505 product_name class C beta-lactamase AQU-1 -> AQU family class C beta-lactamase
1506 blaKPC-40 WP_115470049.1
1507 product_name carbapenem-hydrolyzing class A beta-lactamase KPC-40 -> inhibitor-resistant carbapenem-hydrolyzing class A beta-lactamase KPC-40
1508 blaOXA-681 WP_122630881.1
1509 product_name OXA-2 family class D beta-lactamase OXA-681 -> OXA-2 family inhibitor-resistant class D extended-spectrum beta-lactamase OXA-681
1510 subclass BETA-LACTAM -> CEPHALOSPORIN
1511 - AMR HMM library Changes:
1512 Total: Added 10
1513 Total: Prev. Release 608
1514 Total: Removed 0
1515 Total: This Release 618
1516 HMM Added: 154989_fosA-NCBI
1517 HMM Added: NF000252.1 MsrSA-NCBI
1518 HMM Added: NF000282.2 RPH_KJ151292.1-NCBI
1519 HMM Added: NF000315.1 amicyc_ac_ApmA-NCBI
1520 HMM Added: NF028537.1 QacCGHJ-NCBI
1521 HMM Added: NF033086.2 penta_rpt_QnrA-NCBI
1522 HMM Added: NF033134.0 cmlB1_MFS-NCBI
1523 HMM Added: NF033643.1 FOX-MOX-NCBI
1524 HMM Added: NF033651.1 dipept_VanX-NCBI
1525 HMM Added: NF033653.1 blaOXA-274_like-NCBI
1526 HMM Modified: NF000004.1 vanH-D updated to NF000004.1 vanH-Sc-NCBI
1527 HMM Modified: NF000005.4 ble_BLMT updated to NF000005.4 ble_MBL-NCBI
1528 HMM Modified: NF000006.2 trim_DfrA26 updated to NF000006.2 trim_DfrA3-NCBI
1529 HMM Modified: NF000007.1 16S_rRNA_Rmt_D updated to NF000007.1 16S_rRNA_Rmt_E-NCBI
1530 HMM Modified: NF000008.1 trim_DfrA1_rpt updated to NF000008.1 trim_DfrA20-NCBI
1531 HMM Modified: NF000009.1 tet_MFS_Tcr3 updated to NF000009.1 tet_MFS_V-NCBI
1532 HMM Modified: NF000010.1 AAC_2p_Ib updated to NF000010.1 AAC_2p_Ic-NCBI
1533 HMM Modified: NF000011.2 APH_6_Ic updated to NF000011.2 APH_6_Ic_gen-NCBI
1534 HMM Modified: NF000012.1 trim_DfrI updated to NF000012.1 vanH-Ac1-NCBI
1535 HMM Modified: NF000013.1 tet_NaH_anti_35 updated to NF000013.1 tet_destruct-NCBI
1536 HMM Modified: NF000014.1 tet_prtrans_34 updated to NF000014.1 tet_redox_37-NCBI
1537 HMM Modified: NF000015.3 APH_2pp_IIa updated to NF000015.3 APH_2pp_I_a_f_h-NCBI
1538 HMM Modified: NF000016.1 AAC_6p_Im updated to NF000016.1 AAC_6p_Ip-NCBI
1539 HMM Modified: NF000017.1 linco_LnuD updated to NF000017.1 linco_LnuE-NCBI
1540 HMM Modified: NF000018.2 trim_DfrA10 updated to NF000018.2 trim_DfrA12-NCBI
1541 HMM Modified: NF000019.2 trim_DfrA3 updated to NF000019.2 trim_DfrA35-NCBI
1542 HMM Modified: NF000020.1 stregram_VatE updated to NF000020.1 stregram_VatF-NCBI
1543 HMM Modified: NF000021.4 AAC_6p_Serra updated to NF000021.4 AAC_6p_Steno-NCBI
1544 HMM Modified: NF000022.1 stregra_B_VgbA updated to NF000022.1 stregra_B_VgbB-NCBI
1545 HMM Modified: NF000023.1 qac_SMR_C updated to NF000023.1 qac_SMR_G-NCBI
1546 HMM Modified: NF000024.1 ErmS updated to NF000024.1 ErmV-NCBI
1547 HMM Modified: NF000025.1 MFS_efflux_tcmA updated to NF000025.1 MOX_CMY1_fam-NCBI
1548 HMM Modified: NF000026.1 154989_fosA updated to NF000026.1 156720500_bleO-NCBI
1549 HMM Modified: NF000027.1 156720500_bleO updated to NF000027.1 1567214_ble-NCBI
1550 HMM Modified: NF000028.1 1567214_ble updated to NF000028.1 16S_rRNA_NpmA-NCBI
1551 HMM Modified: NF000029.2 APH_9_Ib updated to NF000029.2 BlaA_Yent-NCBI
1552 HMM Modified: NF000030.1 16S_rRNA_NpmA updated to NF000030.1 16S_rRNA_Rmt_B-NCBI
1553 HMM Modified: NF000032.1 D_ala_D_ser_VanL updated to NF000032.1 D_ala_D_ser_VanN-NCBI
1554 HMM Modified: NF000033.1 vanT-L-mem updated to NF000033.1 vanW-B-NCBI
1555 HMM Modified: NF000034.1 AAC_2p_Ic updated to NF000034.1 AAC_2p_Id-NCBI
1556 HMM Modified: NF000035.1 nosihep_NshR updated to NF000035.1 penta_rpt_Qnr-NCBI
1557 HMM Modified: NF000036.1 D_ala_D_ser_VanE updated to NF000036.1 D_ala_D_ser_VanG-NCBI
1558 HMM Modified: NF000037.1 RND_perm_OqxB updated to NF000037.1 RND_permease_1-NCBI
1559 HMM Modified: NF000039.1 trim_DfrA18 updated to NF000039.1 trim_DfrA19-NCBI
1560 HMM Modified: NF000041.1 trim_DfrA19 updated to NF000041.1 trim_DfrA1_like-NCBI
1561 HMM Modified: NF000042.1 AAC_2p_Id updated to NF000042.1 AAC_2p_Ie-NCBI
1562 HMM Modified: NF000043.1 tet_MFS_P_a updated to NF000043.1 tet_MFS_Tcr3-NCBI
1563 HMM Modified: NF000044.2 APH_2pp_IIIa updated to NF000044.2 APH_2pp_IIa-NCBI
1564 HMM Modified: NF000047.1 ErmV updated to NF000047.1 EspJ_gen-NCBI
1565 HMM Modified: NF000048.1 AAC_6p_A40 updated to NF000048.1 AAC_6p_A48-NCBI
1566 HMM Modified: NF000049.1 tet_MFS_40 updated to NF000049.1 tet_MFS_42-NCBI
1567 HMM Modified: NF000050.2 AAC_6p_A29 updated to NF000050.2 AAC_6p_A30-NCBI
1568 HMM Modified: NF000051.1 macrolide_MefB updated to NF000051.1 macrolide_MefC-NCBI
1569 HMM Modified: NF000052.4 APH_9_Ia updated to NF000052.4 APH_9_Ib-NCBI
1570 HMM Modified: NF000053.2 trim_DfrA12 updated to NF000053.2 trim_DfrA13_A21-NCBI
1571 HMM Modified: NF000054.1 AAC_2p_Ie updated to NF000054.1 AAC_3-NCBI
1572 HMM Modified: NF000055.3 trim_DfrA13_A21 updated to NF000055.3 trim_DfrA18-NCBI
1573 HMM Modified: NF000056.3 penta_rpt_QnrS updated to NF000056.3 penta_rpt_QnrVC-NCBI
1574 HMM Modified: NF000059.1 tet_redox_37 updated to NF000059.1 toxin_EAST1-NCBI
1575 HMM Modified: NF000061.1 linco_LnuP updated to NF000061.1 lyase_MerB-NCBI
1576 HMM Modified: NF000062.1 ANT_6_str updated to NF000062.1 ANT_9-NCBI
1577 HMM Modified: NF000063.1 Fos_BSH_Sepi updated to NF000063.1 Fos_GSH-NCBI
1578 HMM Modified: NF000064.3 ANT_2pp_Ia updated to NF000064.3 ANT_3pp_AadA1-NCBI
1579 HMM Modified: NF000065.1 trim_DfrA3b updated to NF000065.1 trim_DfrA8-NCBI
1580 HMM Modified: NF000066.1 rifampin_ARR_Sa updated to NF000066.1 sat2-NCBI
1581 HMM Modified: NF000067.2 SMR_qac_FL updated to NF000067.2 SMR_qac_G2-NCBI
1582 HMM Modified: NF000069.1 16S_rRNA_Rmt_E updated to NF000069.1 16S_rRNA_Rmt_F-NCBI
1583 HMM Modified: NF000071.4 penta_rpt_QnrA updated to NF000071.4 penta_rpt_QnrAS-NCBI
1584 HMM Modified: NF000072.1 MFS_efflux_PexA updated to NF000072.1 MFS_efflux_tcmA-NCBI
1585 HMM Modified: NF000074.1 299782349_fosC updated to NF000074.1 299782351_fosA-NCBI
1586 HMM Modified: NF000075.1 299782351_fosA updated to NF000075.1 354827590_fosA-NCBI
1587 HMM Modified: NF000076.3 APH_2pp_Ie_IVa updated to NF000076.3 APH_2pp_If_Ih-NCBI
1588 HMM Modified: NF000077.1 Erm42 updated to NF000077.1 Erm43-NCBI
1589 HMM Modified: NF000079.1 ANT_4p_Ib updated to NF000079.1 ANT_6-NCBI
1590 HMM Modified: NF000084.1 amicyc_ac_ApmA updated to NF000084.1 arsB_Sta_pI258-NCBI
1591 HMM Modified: NF000085.1 Fos_BSH_Saur updated to NF000085.1 Fos_BSH_Sepi-NCBI
1592 HMM Modified: NF000086.1 vanY_far updated to NF000086.1 vanY_of_D-NCBI
1593 HMM Modified: NF000087.1 ErmO updated to NF000087.1 ErmS-NCBI
1594 HMM Modified: NF000088.1 viomycin_Vph updated to NF000088.1 zbmA-NCBI
1595 HMM Modified: NF000089.1 qac_MFS_AB updated to NF000089.1 qac_SMR_C-NCBI
1596 HMM Modified: NF000090.1 trans_reg_VanU updated to NF000090.1 transloc_TIR-NCBI
1597 HMM Modified: NF000091.3 D_ala_D_ser_VanG updated to NF000091.3 D_ala_D_ser_VanL-NCBI
1598 HMM Modified: NF000092.1 D_ala_D_lac_Ao2 updated to NF000092.1 D_ala_D_lac_Sc-NCBI
1599 HMM Modified: NF000093.1 D_ala_D_ser_VanN updated to NF000093.1 EreA-NCBI
1600 HMM Modified: NF000094.1 354827590_fosA updated to NF000094.1 47473_otr-NCBI
1601 HMM Modified: NF000095.1 tet_MFS_OtrB updated to NF000095.1 tet_MFS_P_a-NCBI
1602 HMM Modified: NF000096.1 stregra_B_VgbB updated to NF000096.1 stregram_VatA-NCBI
1603 HMM Modified: NF000097.1 stregram_VatC updated to NF000097.1 stregram_VatD-NCBI
1604 HMM Modified: NF000098.1 Fos_BSH_Bcer updated to NF000098.1 Fos_BSH_Saur-NCBI
1605 HMM Modified: NF000100.2 AAC_2p_IIa updated to NF000100.2 AAC_2p_IIb-NCBI
1606 HMM Modified: NF000101.1 stregram_VatA updated to NF000101.1 stregram_VatC-NCBI
1607 HMM Modified: NF000103.1 tet_ABC_AB_B updated to NF000103.1 tet_MFS_38-NCBI
1608 HMM Modified: NF000107.2 APH_4_Ia updated to NF000107.2 APH_6-NCBI
1609 HMM Modified: NF000108.1 AAC_2p_Ia updated to NF000108.1 AAC_2p_Ib-NCBI
1610 HMM Modified: NF000109.2 trim_DfrA9 updated to NF000109.2 trim_DfrB-NCBI
1611 HMM Modified: NF000110.2 AAC_6p_If updated to NF000110.2 AAC_6p_Il-NCBI
1612 HMM Modified: NF000111.1 stregram_VatD updated to NF000111.1 stregram_VatE-NCBI
1613 HMM Modified: NF000112.1 vanH-Amyco updated to NF000112.1 vanH-D-NCBI
1614 HMM Modified: NF000113.1 16S_rRNA_Rmt_F updated to NF000113.1 16S_rRNA_Rmt_G-NCBI
1615 HMM Modified: NF000114.1 16S_rRNA_Rmt_G updated to NF000114.1 16S_rRNA_Rmt_H-NCBI
1616 HMM Modified: NF000115.2 AAC_6p_Iad updated to NF000115.2 AAC_6p_Iak-NCBI
1617 HMM Modified: NF000116.1 16S_rRNA_Rmt_H updated to NF000116.1 16S_rRNA_Rmt_gen-NCBI
1618 HMM Modified: NF000118.3 AAC_6p_A31 updated to NF000118.3 AAC_6p_A34-NCBI
1619 HMM Modified: NF000119.1 linco_LnuF updated to NF000119.1 linco_LnuG-NCBI
1620 HMM Modified: NF000120.3 47473_otr updated to NF000120.3 485965_fosC-NCBI
1621 HMM Modified: NF000122.1 485965_fosC updated to NF000122.1 491618165_fosA-NCBI
1622 HMM Modified: NF000123.2 AAC_6p_A34 updated to NF000123.2 AAC_6p_A37-NCBI
1623 HMM Modified: NF000124.1 491618165_fosA updated to NF000124.1 498180014_fosA-NCBI
1624 HMM Modified: NF000125.1 498180014_fosA updated to NF000125.1 AAC_2p_IIa-NCBI
1625 HMM Modified: NF000126.2 trim_DfrA8 updated to NF000126.2 trim_DfrA9-NCBI
1626 HMM Modified: NF000127.2 trim_DfrA20 updated to NF000127.2 trim_DfrA23-NCBI
1627 HMM Modified: NF000128.1 vanH-Sc updated to NF000128.1 vanH_Agroup-NCBI
1628 HMM Modified: NF000129.1 D_ala_D_lac_Sc updated to NF000129.1 D_ala_D_lac_VanA-NCBI
1629 HMM Modified: NF000131.1 MATE_multi_MepA updated to NF000131.1 MATE_multi_NorM-NCBI
1630 HMM Modified: NF000132.2 APH_2pp_Ig updated to NF000132.2 APH_3p-NCBI
1631 HMM Modified: NF000133.1 Erm32 updated to NF000133.1 Erm37-NCBI
1632 HMM Modified: NF000134.2 trim_DfrA23 updated to NF000134.2 trim_DfrA24-NCBI
1633 HMM Modified: NF000135.2 AAC_6p_IIc updated to NF000135.2 AAC_6p_Ia_fam-NCBI
1634 HMM Modified: NF000137.2 APH_7pp_Ia updated to NF000137.2 APH_9_Ia-NCBI
1635 HMM Modified: NF000138.1 AAC_6p_Iz updated to NF000138.1 AAC_6p_Serra-NCBI
1636 HMM Modified: NF000139.2 penta_rpt_QnrD updated to NF000139.2 penta_rpt_QnrE-NCBI
1637 HMM Modified: NF000141.1 linco_LnuC updated to NF000141.1 linco_LnuD-NCBI
1638 HMM Modified: NF000142.1 vanZ-Pt updated to NF000142.1 viomycin_Vph-NCBI
1639 HMM Modified: NF000143.1 trim_DfrG updated to NF000143.1 trim_DfrI-NCBI
1640 HMM Modified: NF000144.1 D_ala_D_lac_VanF updated to NF000144.1 D_ala_D_lac_VanI-NCBI
1641 HMM Modified: NF000145.1 vanZ-F updated to NF000145.1 vanZ-Pt-NCBI
1642 HMM Modified: NF000146.2 trim_DfrA24 updated to NF000146.2 trim_DfrA26-NCBI
1643 HMM Modified: NF000147.1 stregram_VatF updated to NF000147.1 stregram_VatH-NCBI
1644 HMM Modified: NF000148.1 SMR_qac_pB8 updated to NF000148.1 Shiga_Stx1A-NCBI
1645 HMM Modified: NF000149.1 vanXY_G updated to NF000149.1 vanY_AFMPt-NCBI
1646 HMM Modified: NF000150.1 16S_rRNA_Rmt_C updated to NF000150.1 16S_rRNA_Rmt_D-NCBI
1647 HMM Modified: NF000151.1 vanH-Ac1 updated to NF000151.1 vanH-Amyco-NCBI
1648 HMM Modified: NF000152.2 AAC_6p_A37 updated to NF000152.2 AAC_6p_A40-NCBI
1649 HMM Modified: NF000153.1 linco_LnuAN2 updated to NF000153.1 linco_LnuB-NCBI
1650 HMM Modified: NF000154.1 macrolide_MefEN2 updated to NF000154.1 macrolide_MphA-NCBI
1651 HMM Modified: NF000155.1 trim_DfrC updated to NF000155.1 trim_DfrD-NCBI
1652 HMM Modified: NF000157.1 fusid_est_FusH updated to NF000157.1 glycotrans_Rgt-NCBI
1653 HMM Modified: NF000158.2 AAC_6p_Il updated to NF000158.2 AAC_6p_Im-NCBI
1654 HMM Modified: NF000159.1 trim_DfrD updated to NF000159.1 trim_DfrDGK-NCBI
1655 HMM Modified: NF000165.3 AAC_6p_Entco updated to NF000165.3 AAC_6p_IIc-NCBI
1656 HMM Modified: NF000166.1 ABCF_CarA updated to NF000166.1 ABCF_Lsa_all-NCBI
1657 HMM Modified: NF000167.1 ABCF_Lsa_all updated to NF000167.1 ABCF_Msr_all-NCBI
1658 HMM Modified: NF000168.1 ABCF_Msr_all updated to NF000168.1 ABCF_OptrA-NCBI
1659 HMM Modified: NF000169.1 ABCF_Sal updated to NF000169.1 ABCF_Vga_all-NCBI
1660 HMM Modified: NF000170.1 ABCF_Vga_all updated to NF000170.1 ABCF_producer-NCBI
1661 HMM Modified: NF000171.1 ABCF_producer updated to NF000171.1 ANT_2pp_Ia-NCBI
1662 HMM Modified: NF000181.1 ANT_4p_Ia updated to NF000181.1 ANT_4p_Ib-NCBI
1663 HMM Modified: NF000185.2 BlaEC updated to NF000185.2 BlaI_of_MRSA-NCBI
1664 HMM Modified: NF000186.1 BlaI_of_MRSA updated to NF000186.1 BlaMIR-NCBI
1665 HMM Modified: NF000187.3 BlaMIR updated to NF000187.3 BlmB-NCBI
1666 HMM Modified: NF000188.2 CARB updated to NF000188.2 CAR_gen_B3-NCBI
1667 HMM Modified: NF000191.1 CMY2 updated to NF000191.1 CfrAB-NCBI
1668 HMM Modified: NF000206.1 D_ala_D_lac updated to NF000206.1 D_ala_D_lac_Ao2-NCBI
1669 HMM Modified: NF000207.3 D_ala_D_ser updated to NF000207.3 D_ala_D_ser_VanC-NCBI
1670 HMM Modified: NF000208.1 EreA updated to NF000208.1 EreB-NCBI
1671 HMM Modified: NF000209.1 EreB updated to NF000209.1 EreD-NCBI
1672 HMM Modified: NF000216.2 blaFEZ updated to NF000216.2 blaFIM-NCBI
1673 HMM Modified: NF000218.1 FexA updated to NF000218.1 FloR-NCBI
1674 HMM Modified: NF000219.1 FloR updated to NF000219.1 FosA-NCBI
1675 HMM Modified: NF000221.4 FosA updated to NF000221.4 FosF-NCBI
1676 HMM Modified: NF000222.1 FosX updated to NF000222.1 Fos_BSH-NCBI
1677 HMM Modified: NF000224.3 AAC_6p_Acine updated to NF000224.3 AAC_6p_Entco-NCBI
1678 HMM Modified: NF000225.3 AAC_6p_Strep updated to NF000225.3 AAC_6p_Yersi-NCBI
1679 HMM Modified: NF000232.1 L2 updated to NF000232.1 LEN-NCBI
1680 HMM Modified: NF000233.2 LEN updated to NF000233.2 MATE_multi_MepA-NCBI
1681 HMM Modified: NF000235.3 linco_LnuB updated to NF000235.3 linco_LnuC-NCBI
1682 HMM Modified: NF000236.1 linco_LnuA updated to NF000236.1 linco_LnuAN2-NCBI
1683 HMM Modified: NF000237.1 MECA_PBP2A updated to NF000237.1 MECA_pure-NCBI
1684 HMM Modified: NF000239.3 MOX_CMY1_fam updated to NF000239.3 MPH_3-NCBI
1685 HMM Modified: NF000240.1 macrolide_MphC updated to NF000240.1 macrolide_MphE-NCBI
1686 HMM Modified: NF000241.1 MPH_3 updated to NF000241.1 MecI_of_mecA-NCBI
1687 HMM Modified: NF000242.1 macrolide_MphB updated to NF000242.1 macrolide_MphC-NCBI
1688 HMM Modified: NF000243.1 MecI_of_mecA updated to NF000243.1 MecI_of_mecC-NCBI
1689 HMM Modified: NF000244.1 MecI_of_mecC updated to NF000244.1 MerA-TIGRFAMs
1690 HMM Modified: NF000245.1 macrolide_MefA updated to NF000245.1 macrolide_MefB-NCBI
1691 HMM Modified: NF000246.1 macrolide_MefC updated to NF000246.1 macrolide_MefEN2-NCBI
1692 HMM Modified: NF000249.1 MexE updated to NF000249.1 MexX-Resfams
1693 HMM Modified: NF000254.1 macrolide_MphA updated to NF000254.1 macrolide_MphB-NCBI
1694 HMM Modified: NF000255.1 macrolide_MphF updated to NF000255.1 merT_RC607-NCBI
1695 HMM Modified: NF000256.1 MsrSA updated to NF000256.1 MupA-NCBI
1696 HMM Modified: NF000257.1 MupA updated to NF000257.1 MupB-NCBI
1697 HMM Modified: NF000258.1 MupB updated to NF000258.1 NimABCDEF-NCBI
1698 HMM Modified: NF000259.2 blaNDM updated to NF000259.2 blaOCH-NCBI
1699 HMM Modified: NF000261.1 NimABCDEF updated to NF000261.1 NimIJ-NCBI
1700 HMM Modified: NF000262.1 NimIJ updated to NF000262.1 NshR_TsnR-NCBI
1701 HMM Modified: NF000263.1 MATE_multi_NorM updated to NF000263.1 MECA1_pure-NCBI
1702 HMM Modified: NF000264.2 blaOCH updated to NF000264.2 blaOXA-10_like-NCBI
1703 HMM Modified: NF000265.2 OKP updated to NF000265.2 OqxA_adapt_sub-NCBI
1704 HMM Modified: NF000266.2 blaOXA-23_like updated to NF000266.2 blaOXA-24_like-NCBI
1705 HMM Modified: NF000267.2 blaOXA-2_like updated to NF000267.2 blaOXA-364_like-NCBI
1706 HMM Modified: NF000268.2 blaOXA-51_like updated to NF000268.2 blaOXA-55_like-NCBI
1707 HMM Modified: NF000269.2 blaOXA-213_like updated to NF000269.2 blaOXA-214_like-NCBI
1708 HMM Modified: NF000270.1 bla_class_D_alt updated to NF000270.1 bla_class_D_main-NCBI
1709 HMM Modified: NF000271.2 blaOXY updated to NF000271.2 blaP-NCBI
1710 HMM Modified: NF000272.1 OqxA_adapt_sub updated to NF000272.1 PRK10026.1-PRKfam
1711 HMM Modified: NF000275.2 blaPLA_ORN_TER updated to NF000275.2 blaPME-NCBI
1712 HMM Modified: NF000276.2 SMR_qac_E updated to NF000276.2 SMR_qac_FL-NCBI
1713 HMM Modified: NF000277.1 qac_SMR_G updated to NF000277.1 qac_SMR_H-NCBI
1714 HMM Modified: NF000278.1 SMR_qac_G2 updated to NF000278.1 SMR_qac_K-NCBI
1715 HMM Modified: NF000279.1 qac_SMR_H updated to NF000279.1 qac_SMR_J-NCBI
1716 HMM Modified: NF000280.1 SMR_efflux_smr updated to NF000280.1 SMR_qac_E-NCBI
1717 HMM Modified: NF000283.1 RPH_KJ151292.1 updated to NF000283.1 RTG-NCBI
1718 HMM Modified: NF000284.1 RTG updated to NF000284.1 SHV-NCBI
1719 HMM Modified: NF000285.3 SHV updated to NF000285.3 SHV_LEN_OKP-NCBI
1720 HMM Modified: NF000287.1 SMB1_fam updated to NF000287.1 SMR_efflux_smr-NCBI
1721 HMM Modified: NF000294.1 Sul1 updated to NF000294.1 Sul2-NCBI
1722 HMM Modified: NF000295.1 Sul2 updated to NF000295.1 Sul3-NCBI
1723 HMM Modified: NF000296.1 Sul3 updated to NF000296.1 Sul4-NCBI
1724 HMM Modified: NF000298.2 blaTLA updated to NF000298.2 blaTMB-NCBI
1725 HMM Modified: NF000311.1 Vat_ABCDEFH updated to NF000311.1 aadE-Cc-NCBI
1726 HMM Modified: NF000312.1 ANT_6_aadK updated to NF000312.1 ANT_6_aadS-NCBI
1727 HMM Modified: NF000318.1 rifampin_ARR_Ms updated to NF000318.1 rifampin_ARR_Sa-NCBI
1728 HMM Modified: NF000320.2 betalact_A_Burk_PenA updated to NF000320.2 betalact_A_Burk_PenI-NCBI
1729 HMM Modified: NF000321.2 betalact_A_Burk_PenI updated to NF000321.2 bla-A_Chryseo-NCBI
1730 HMM Modified: NF000322.2 blaCcrA updated to NF000322.2 blaDHA-NCBI
1731 HMM Modified: NF000323.2 blaFONA updated to NF000323.2 blaFOX-NCBI
1732 HMM Modified: NF000324.2 blaLUT updated to NF000324.2 blaMCA-NCBI
1733 HMM Modified: NF000326.1 blaR1_generic updated to NF000326.1 blaRCP-NCBI
1734 HMM Modified: NF000327.2 blaSCO updated to NF000327.2 blaSED-NCBI
1735 HMM Modified: NF000328.2 blaSED updated to NF000328.2 blaSFH-NCBI
1736 HMM Modified: NF000329.2 bla_B2_CphA updated to NF000329.2 bla_Bc_2-NCBI
1737 HMM Modified: NF000330.1 trim_DfrA1_like updated to NF000330.1 trim_DfrA1_rpt-NCBI
1738 HMM Modified: NF000331.1 trim_DfrB updated to NF000331.1 trim_DfrC-NCBI
1739 HMM Modified: NF000332.1 trim_DfrDGK updated to NF000332.1 trim_DfrE-NCBI
1740 HMM Modified: NF000333.1 trim_DfrF updated to NF000333.1 trim_DfrG-NCBI
1741 HMM Modified: NF000336.1 emrE updated to NF000336.1 erm_38_23S_MT-NCBI
1742 HMM Modified: NF000337.1 erm_SHROVE updated to NF000337.1 fomA_AB016934.1.gene6-NCBI
1743 HMM Modified: NF000338.1 fomA_AB016934.1.gene6 updated to NF000338.1 fos-Crono-NCBI
1744 HMM Modified: NF000339.2 fos-Crono updated to NF000339.2 fosA7-NCBI
1745 HMM Modified: NF000340.1 fusB updated to NF000340.1 fusC-NCBI
1746 HMM Modified: NF000341.1 fusC updated to NF000341.1 fusD-NCBI
1747 HMM Modified: NF000343.1 rif_mono_Iri updated to NF000343.1 rif_monoox-NCBI
1748 HMM Modified: NF000354.1 glycotrans_Rgt updated to NF000354.1 intimin_all-NCBI
1749 HMM Modified: NF000355.3 ribo_prot_ABC_F updated to NF000355.3 rif_mono_Iri-NCBI
1750 HMM Modified: NF000358.1 sat2 updated to NF000358.1 sat3-NCBI
1751 HMM Modified: NF000359.1 sat3 updated to NF000359.1 sat4-NCBI
1752 HMM Modified: NF000360.1 sat4 updated to NF000360.1 self_FomB_kinase-NCBI
1753 HMM Modified: NF000361.1 self_FomB_kinase updated to NF000361.1 self_GT_OleI-NCBI
1754 HMM Modified: NF000362.1 self_GT_OleI updated to NF000362.1 self_KamB-NCBI
1755 HMM Modified: NF000363.1 self_KamB updated to NF000363.1 sensor_BlaR1-NCBI
1756 HMM Modified: NF000371.1 vanH_Agroup updated to NF000371.1 vanH_gen-NCBI
1757 HMM Modified: NF000372.1 D_ala_D_lac_VanI updated to NF000372.1 D_ala_D_lac_VanM-NCBI
1758 HMM Modified: NF000373.1 vanJ updated to NF000373.1 vanR-A-NCBI
1759 HMM Modified: NF000374.1 D_ala_D_lac_VanO updated to NF000374.1 D_ala_D_ser-NCBI
1760 HMM Modified: NF000380.1 vanXY updated to NF000380.1 vanXY_G-NCBI
1761 HMM Modified: NF000383.2 blaLAP updated to NF000383.2 blaLHK-NCBI
1762 HMM Modified: NF000384.1 QacCGHJ updated to NF000384.1 RND_adapt_MexA-NCBI
1763 HMM Modified: NF000385.4 blaACT updated to NF000385.4 blaADC-NCBI
1764 HMM Modified: NF000386.2 blaOXA-10_like updated to NF000386.2 blaOXA-114_like-NCBI
1765 HMM Modified: NF000387.2 blaOXA-48_like updated to NF000387.2 blaOXA-493_like-NCBI
1766 HMM Modified: NF000388.2 blaOXA-1_like updated to NF000388.2 blaOXA-211_like-NCBI
1767 HMM Modified: NF000389.2 blaPER updated to NF000389.2 blaPLA_ORN_TER-NCBI
1768 HMM Modified: NF000390.2 blaVEB updated to NF000390.2 blaVIM-NCBI
1769 HMM Modified: NF000395.3 blaOXA-60_like updated to NF000395.3 blaOXA-61_like-NCBI
1770 HMM Modified: NF000396.2 blaGIM updated to NF000396.2 blaGOB-NCBI
1771 HMM Modified: NF000397.2 blaACC updated to NF000397.2 blaACI-NCBI
1772 HMM Modified: NF000398.2 blaBEL updated to NF000398.2 blaBES-NCBI
1773 HMM Modified: NF000399.2 blaFOX updated to NF000399.2 blaFRI-NCBI
1774 HMM Modified: NF000400.2 blaIMI updated to NF000400.2 blaIMP-NCBI
1775 HMM Modified: NF000401.1 vanR-A updated to NF000401.1 vanR-B-NCBI
1776 HMM Modified: NF000402.1 vanR-B updated to NF000402.1 vanR-C-NCBI
1777 HMM Modified: NF000403.1 vanR-C updated to NF000403.1 vanR-D-NCBI
1778 HMM Modified: NF000404.1 vanR-D updated to NF000404.1 vanR-O-NCBI
1779 HMM Modified: NF000405.1 HARLDQ_not_B3 updated to NF000405.1 HK_VanS_ACDEFG-NCBI
1780 HMM Modified: NF000406.1 MECB_PBP updated to NF000406.1 MECC_PBP-NCBI
1781 HMM Modified: NF000407.1 MECC_PBP updated to NF000407.1 MECD_PBP-NCBI
1782 HMM Modified: NF000408.1 MECA2_pure updated to NF000408.1 MECA_PBP2A-NCBI
1783 HMM Modified: NF000409.1 MECA_pure updated to NF000409.1 MECB_PBP-NCBI
1784 HMM Modified: NF000410.1 MECA1_pure updated to NF000410.1 MECA2_pure-NCBI
1785 HMM Modified: NF000411.1 Erm45 updated to NF000411.1 ErmO-NCBI
1786 HMM Modified: NF000412.1 Erm43 updated to NF000412.1 Erm45-NCBI
1787 HMM Modified: NF000413.2 blaBKC updated to NF000413.2 blaBKC_GPC-NCBI
1788 HMM Modified: NF000414.2 blaPME updated to NF000414.2 blaPOM-NCBI
1789 HMM Modified: NF000415.2 blaOXA-372_like updated to NF000415.2 blaOXA-46_like-NCBI
1790 HMM Modified: NF000417.2 blaOXA-211_like updated to NF000417.2 blaOXA-213_like-NCBI
1791 HMM Modified: NF000418.2 blaOXA-214_like updated to NF000418.2 blaOXA-229_like-NCBI
1792 HMM Modified: NF000419.2 blaCMH updated to NF000419.2 blaCPS-NCBI
1793 HMM Modified: NF000420.1 penta_rpt_QnrB updated to NF000420.1 penta_rpt_QnrC-NCBI
1794 HMM Modified: NF000421.1 penta_rpt_QnrVC updated to NF000421.1 phenyl_MerG-NCBI
1795 HMM Modified: NF000422.6 blaPDC updated to NF000422.6 blaPDC_var-NCBI
1796 HMM Modified: NF000423.2 blaSRT updated to NF000423.2 blaTEM-NCBI
1797 HMM Modified: NF000424.3 CfrAB updated to NF000424.3 D_ala_D_lac-NCBI
1798 HMM Modified: NF000425.2 blaADC updated to NF000425.2 blaAFM-NCBI
1799 HMM Modified: NF000426.2 blaSIM updated to NF000426.2 blaSME-NCBI
1800 HMM Modified: NF000427.2 blaCAU updated to NF000427.2 blaCBP-NCBI
1801 HMM Modified: NF000428.4 blaFRI updated to NF000428.4 blaFTU-NCBI
1802 HMM Modified: NF000429.2 blaOXA-63_like updated to NF000429.2 blaOXA-727_like-NCBI
1803 HMM Modified: NF000430.2 blaOXA-62_like updated to NF000430.2 blaOXA-63_like-NCBI
1804 HMM Modified: NF000431.1 AAC_6p_Ian updated to NF000431.1 AAC_6p_Ib-NCBI
1805 HMM Modified: NF000432.2 blaOXA-50_like updated to NF000432.2 blaOXA-51_like-NCBI
1806 HMM Modified: NF000434.2 blaOXA-24_like updated to NF000434.2 blaOXA-266_fam-NCBI
1807 HMM Modified: NF000435.2 blaOXA-61_like updated to NF000435.2 blaOXA-62_like-NCBI
1808 HMM Modified: NF000436.2 blaOXA-134_like updated to NF000436.2 blaOXA-143_like-NCBI
1809 HMM Modified: NF000437.2 blaFIM updated to NF000437.2 blaFONA-NCBI
1810 HMM Modified: NF000438.2 blaPOM updated to NF000438.2 blaPST-NCBI
1811 HMM Modified: NF000439.2 blaAIM updated to NF000439.2 blaALI-NCBI
1812 HMM Modified: NF000440.2 blaTHIN updated to NF000440.2 blaTLA-NCBI
1813 HMM Modified: NF000441.2 blaMUS updated to NF000441.2 blaNDM-NCBI
1814 HMM Modified: NF000442.2 blaTUS updated to NF000442.2 blaVCC-NCBI
1815 HMM Modified: NF000443.2 blaTMB updated to NF000443.2 blaTTU-NCBI
1816 HMM Modified: NF000444.2 blaEBR updated to NF000444.2 blaESP-1_fam-NCBI
1817 HMM Modified: NF000445.2 blaDIM updated to NF000445.2 blaDIM_SIM_IMP-NCBI
1818 HMM Modified: NF000446.2 blaCIA updated to NF000446.2 blaCMA-NCBI
1819 HMM Modified: NF000447.2 bla-A_Chryseo updated to NF000447.2 bla-B1-FLAV-NCBI
1820 HMM Modified: NF000448.2 blaACI updated to NF000448.2 blaACT-NCBI
1821 HMM Modified: NF000449.2 blaBIC updated to NF000449.2 blaBJP-NCBI
1822 HMM Modified: NF000450.2 bla-B1-FLAV updated to NF000450.2 bla1-NCBI
1823 HMM Modified: NF000451.2 blaBES updated to NF000451.2 blaBIC-NCBI
1824 HMM Modified: NF000452.2 blaKLUC updated to NF000452.2 blaKPC-NCBI
1825 HMM Modified: NF000453.2 blaPEDO-3_fam updated to NF000453.2 blaPER-NCBI
1826 HMM Modified: NF000454.2 blaCPS updated to NF000454.2 blaCRH-NCBI
1827 HMM Modified: NF000455.2 blaESP-1_fam updated to NF000455.2 blaFEZ-NCBI
1828 HMM Modified: NF000456.2 blaMSI-1_fam updated to NF000456.2 blaMUS-NCBI
1829 HMM Modified: NF000457.2 blaPEDO-1_fam updated to NF000457.2 blaPEDO-2_fam-NCBI
1830 HMM Modified: NF000458.2 blaPEDO-2_fam updated to NF000458.2 blaPEDO-3_fam-NCBI
1831 HMM Modified: NF000459.2 blaSPG-1_fam updated to NF000459.2 blaSPM-NCBI
1832 HMM Modified: NF000460.1 fusD updated to NF000460.1 fusF-NCBI
1833 HMM Modified: NF000461.2 blaOXA-184_like updated to NF000461.2 blaOXA-1_like-NCBI
1834 HMM Modified: NF000462.2 blaOXA-493_like updated to NF000462.2 blaOXA-50_like-NCBI
1835 HMM Modified: NF000463.2 blaOXA_Campylobacter updated to NF000463.2 blaOXY-NCBI
1836 HMM Modified: NF000464.2 blaOXA-143_like updated to NF000464.2 blaOXA-184_like-NCBI
1837 HMM Modified: NF000465.1 polymyxin_MCR1 updated to NF000465.1 polymyxin_MCR2-NCBI
1838 HMM Modified: NF000466.2 16S_rRNA_Rmt_gen updated to NF000466.2 299782349_fosC-NCBI
1839 HMM Modified: NF000467.1 FosG updated to NF000467.1 FosK-NCBI
1840 HMM Modified: NF000468.1 Erm37 updated to NF000468.1 Erm42-NCBI
1841 HMM Modified: NF000469.2 CAR_gen_B3 updated to NF000469.2 CHL_hydrolase-NCBI
1842 HMM Modified: NF000470.1 D_ala_D_lac_VanM updated to NF000470.1 D_ala_D_lac_VanO-NCBI
1843 HMM Modified: NF000471.1 vanY_of_D updated to NF000471.1 vanZ-A-NCBI
1844 HMM Modified: NF000472.1 vanY_AFMPt updated to NF000472.1 vanY_BG-NCBI
1845 HMM Modified: NF000473.1 vanY_BG updated to NF000473.1 vanY_far-NCBI
1846 HMM Modified: NF000474.1 tet_ABC_46_A updated to NF000474.1 tet_ABC_46_B-NCBI
1847 HMM Modified: NF000475.1 tet_ABC_46_B updated to NF000475.1 tet_ABC_AB_A-NCBI
1848 HMM Modified: NF000476.1 myrA updated to NF000476.1 nosihep_NshR-NCBI
1849 HMM Modified: NF000477.1 NshR_TsnR updated to NF000477.1 OKP-NCBI
1850 HMM Modified: NF000478.2 linco_LnuE updated to NF000478.2 linco_LnuF-NCBI
1851 HMM Modified: NF000479.1 zbmA updated to NF000479.1
1852 HMM Modified: NF000480.2 PSE updated to NF000480.2 P_eth_NH2_trans-NCBI
1853 HMM Modified: NF000481.1 carbeni_gen updated to NF000481.1 chaper_CopP-NCBI
1854 HMM Modified: NF000482.1 AAC_3_XI updated to NF000482.1 AAC_6p_A10-NCBI
1855 HMM Modified: NF000483.1 BlmB updated to NF000483.1 CARB-NCBI
1856 HMM Modified: NF000485.1 TlmB updated to NF000485.1 VanC1_ser_lig-NCBI
1857 HMM Modified: NF000486.1 AAC_6p_Ip updated to NF000486.1 AAC_6p_Iz-NCBI
1858 HMM Modified: NF000487.1 stat updated to NF000487.1 stregra_B_VgbA-NCBI
1859 HMM Modified: NF000488.1 chrB updated to NF000488.1 classA_carba-NCBI
1860 HMM Modified: NF000489.1 ble_Sh updated to NF000489.1 carbeni_gen-NCBI
1861 HMM Modified: NF000490.1 chloram_CatB updated to NF000490.1 chrB-NCBI
1862 HMM Modified: NF000491.1 chloram_CatA updated to NF000491.1 chloram_CatB-NCBI
1863 HMM Modified: NF000492.1 vanH_gen updated to NF000492.1 vanJ-NCBI
1864 HMM Modified: NF000493.1 Fos_BSH updated to NF000493.1 Fos_BSH_Bcer-NCBI
1865 HMM Modified: NF000494.1 FosF updated to NF000494.1 FosG-NCBI
1866 HMM Modified: NF000495.1 FosK updated to NF000495.1 FosL-NCBI
1867 HMM Modified: NF000496.1 Fos_GSH updated to NF000496.1 HARLDQ_not_B3-NCBI
1868 HMM Modified: NF000497.1 AAC_6p_Iak updated to NF000497.1 AAC_6p_Ian-NCBI
1869 HMM Modified: NF000498.2 APH_2pp_If_Ih updated to NF000498.2 APH_2pp_Ig-NCBI
1870 HMM Modified: NF000499.1 Erm23S_rRNA_broad updated to NF000499.1 Erm32-NCBI
1871 HMM Modified: NF000500.2 blaOXA-58_like updated to NF000500.2 blaOXA-60_like-NCBI
1872 HMM Modified: NF000501.2 blaOXA-229_like updated to NF000501.2 blaOXA-22_like-NCBI
1873 HMM Modified: NF000502.2 blaOXA-85_like updated to NF000502.2 blaOXA_Campylobacter-NCBI
1874 HMM Modified: NF000503.1 fusF updated to NF000503.1 fusid_est_FusH-NCBI
1875 HMM Modified: NF000504.1 stregram_VatH updated to NF000504.1 stregram_VatI-NCBI
1876 HMM Modified: NF000505.2 blaGIL updated to NF000505.2 blaGIM-NCBI
1877 HMM Modified: NF000506.1 tet_ABC_AB_A updated to NF000506.1 tet_ABC_AB_B-NCBI
1878 HMM Modified: NF000507.1 AAC_6p_Ie updated to NF000507.1 AAC_6p_Ie_fam-NCBI
1879 HMM Modified: NF000508.1 APH_2pp_Ia updated to NF000508.1 APH_2pp_Ie_IVa-NCBI
1880 HMM Modified: NF000509.1 efflux_CmlA updated to NF000509.1 efflux_Cmx-NCBI
1881 HMM Modified: NF000510.1 efflux_Cmx updated to NF000510.1 efflux_OM_AdeC-NCBI
1882 HMM Modified: NF000511.2 blaCME updated to NF000511.2 blaCMH-NCBI
1883 HMM Modified: NF000512.2 blaSGM updated to NF000512.2 blaSIM-NCBI
1884 HMM Modified: NF000513.2 blaFTU updated to NF000513.2 blaGES-NCBI
1885 HMM Modified: NF000514.1 ABCF_OptrA updated to NF000514.1 ABCF_Sal-NCBI
1886 HMM Modified: NF000516.1 EreD updated to NF000516.1 Erm23S_rRNA_broad-NCBI
1887 HMM Modified: NF000517.2 blaCBP updated to NF000517.2 blaCDD-NCBI
1888 HMM Modified: NF000518.2 blaVCC updated to NF000518.2 blaVEB-NCBI
1889 HMM Modified: NF000519.2 blaPDC_var updated to NF000519.2 blaPEDO-1_fam-NCBI
1890 HMM Modified: NF000520.2 blaOXA-286_like updated to NF000520.2 blaOXA-2_like-NCBI
1891 HMM Modified: NF000531.2 blaTEM updated to NF000531.2 blaTHIN-NCBI
1892 HMM Modified: NF000538.0 classA_carba updated to NF000538.0 classA_firm-NCBI
1893 HMM Modified: NF007456.1 PRK10026.1 updated to NF007456.1 PRK13747.1-PRKfam
1894 HMM Modified: NF010310.2 PRK13747.1 updated to NF010310.2 PRK13752.1-PRKfam
1895 HMM Modified: NF010315.0 PRK13752.1 updated to NF010315.0 PSE-NCBI
1896 HMM Modified: NF012098.1 blaBPU updated to NF012098.1 blaCAM-NCBI
1897 HMM Modified: NF012099.1 SubclassA2 updated to NF012099.1 Sul1-NCBI
1898 HMM Modified: NF012100.0 blaVIM updated to NF012100.0 blaZ-NCBI
1899 HMM Modified: NF012101.1 blaGOB updated to NF012101.1 blaIMI-NCBI
1900 HMM Modified: NF012102.1 blaDHA updated to NF012102.1 blaDIM-NCBI
1901 HMM Modified: NF012103.0 blaGES updated to NF012103.0 blaGIL-NCBI
1902 HMM Modified: NF012137.0 bla_xUS updated to NF012137.0 ble_BLMA_gen-NCBI
1903 HMM Modified: NF012140.0 blaBJP updated to NF012140.0 blaBKC-NCBI
1904 HMM Modified: NF012141.0 blaKPC updated to NF012141.0 blaL-NCBI
1905 HMM Modified: NF012142.0 blaSME updated to NF012142.0 blaSPG-1_fam-NCBI
1906 HMM Modified: NF012143.0 SHV_LEN_OKP updated to NF012143.0 SMB1_fam-NCBI
1907 HMM Modified: NF012145.1 blaDIM_SIM_IMP updated to NF012145.1 blaEBR-NCBI
1908 HMM Modified: NF012146.1 blaB-IND-MUS updated to NF012146.1 blaB-NCBI
1909 HMM Modified: NF012147.1 blaIMP updated to NF012147.1 blaIND-NCBI
1910 HMM Modified: NF012148.0 blaKHM-HMB updated to NF012148.0 blaKLUC-NCBI
1911 HMM Modified: NF012149.0 blaIND updated to NF012149.0 blaKHM-HMB-NCBI
1912 HMM Modified: NF012150.3 blaSPM updated to NF012150.3 blaSRT-NCBI
1913 HMM Modified: NF012151.0 penta_rpt_QnrAS updated to NF012151.0 penta_rpt_QnrB-NCBI
1914 HMM Modified: NF012152.0 penta_rpt_QnrC updated to NF012152.0 penta_rpt_QnrD-NCBI
1915 HMM Modified: NF012153.1 tet_protect updated to NF012153.1 tet_protect_M-NCBI
1916 HMM Modified: NF012154.0 tet_protect_Q updated to NF012154.0 tet_prtrans_34-NCBI
1917 HMM Modified: NF012155.1 tet_protect_M updated to NF012155.1 tet_protect_M_W-NCBI
1918 HMM Modified: NF012156.1 blaP updated to NF012156.1 blaPAC-NCBI
1919 HMM Modified: NF012157.0 ANT_3pp_I updated to NF012157.0 ANT_3pp_II-NCBI
1920 HMM Modified: NF012158.1 macrolide_MphE updated to NF012158.1 macrolide_MphF-NCBI
1921 HMM Modified: NF012159.0 polymyxin_MCR2 updated to NF012159.0 polymyxin_MCR3-NCBI
1922 HMM Modified: NF012160.0 APH_6_Steno updated to NF012160.0 APH_7pp_Ia-NCBI
1923 HMM Modified: NF012161.0 bla_class_D_main updated to NF012161.0 bla_subclass_B1-NCBI
1924 HMM Modified: NF012165.0 AAC_6p_set_A updated to NF012165.0 ABCF_CarA-NCBI
1925 HMM Modified: NF012167.0 classA_firm updated to NF012167.0 cmlA_floR-NCBI
1926 HMM Modified: NF012169.0 qepA updated to NF012169.0 rRNA_meth_EmtA-NCBI
1927 HMM Modified: NF012170.0 qac_SMR_J updated to NF012170.0 qepA-NCBI
1928 HMM Modified: NF012171.0 APH_6 updated to NF012171.0 APH_6_Ic-NCBI
1929 HMM Modified: NF012172.1 FOX-MOX updated to NF012172.1 FexA-NCBI
1930 HMM Modified: NF012173.1 CMY2-MIR-ACT-EC updated to NF012173.1 CMY2-NCBI
1931 HMM Modified: NF012174.0 tet_MFS_A_B_C_D updated to NF012174.0 tet_MFS_B-NCBI
1932 HMM Modified: NF012175.1 tet_MFS_L_K_45 updated to NF012175.1 tet_MFS_OtrB-NCBI
1933 HMM Modified: NF012176.0 tet_MFS_38 updated to NF012176.0 tet_MFS_40-NCBI
1934 HMM Modified: NF012177.1 tet_MFS_42 updated to NF012177.1 tet_MFS_43-NCBI
1935 HMM Modified: NF012178.0 tet_MFS_V updated to NF012178.0 tet_MFS_Y-NCBI
1936 HMM Modified: NF012180.1 tet_MFS_43 updated to NF012180.1 tet_MFS_45-NCBI
1937 HMM Modified: NF012183.0 tet_MFS_K updated to NF012183.0 tet_MFS_L-NCBI
1938 HMM Modified: NF012184.0 tet_MFS_45 updated to NF012184.0 tet_MFS_A-NCBI
1939 HMM Modified: NF012185.0 tet_MFS_L updated to NF012185.0 tet_MFS_L_K_45-NCBI
1940 HMM Modified: NF012186.0 tet_MFS_D updated to NF012186.0 tet_MFS_E-NCBI
1941 HMM Modified: NF012187.0 tet_MFS_E updated to NF012187.0 tet_MFS_G-NCBI
1942 HMM Modified: NF012188.1 tet_MFS_Y updated to NF012188.1 tet_NaH_anti_35-NCBI
1943 HMM Modified: NF012190.1 tet_MFS_B updated to NF012190.1 tet_MFS_C-NCBI
1944 HMM Modified: NF012191.0 tet_MFS_C updated to NF012191.0 tet_MFS_D-NCBI
1945 HMM Modified: NF012192.0 tet_MFS_G updated to NF012192.0 tet_MFS_H-NCBI
1946 HMM Modified: NF012193.0 tet_MFS_A updated to NF012193.0 tet_MFS_A_B_C_D-NCBI
1947 HMM Modified: NF012194.0 tet_MFS_J updated to NF012194.0 tet_MFS_K-NCBI
1948 HMM Modified: NF012195.0 tet_MFS_H updated to NF012195.0 tet_MFS_H_J-NCBI
1949 HMM Modified: NF012199.0 cml_V_MFS updated to NF012199.0 cmx_cmrA-NCBI
1950 HMM Modified: NF012202.0 ble_MBL updated to NF012202.0 ble_Sh-NCBI
1951 HMM Modified: NF012203.0 cmlB1_MFS updated to NF012203.0 cml_V_MFS-NCBI
1952 HMM Modified: NF012207.0 tet_MFS_H_J updated to NF012207.0 tet_MFS_J-NCBI
1953 HMM Modified: NF012212.0 ANT_9 updated to NF012212.0 APH_2pp_IIIa-NCBI
1954 HMM Modified: NF012213.0 VanC1_ser_lig updated to NF012213.0 VarG_fam_MBL-NCBI
1955 HMM Modified: NF012214.1 D_ala_D_ser_VanC updated to NF012214.1 D_ala_D_ser_VanE-NCBI
1956 HMM Modified: NF012215.1 D_ala_D_lac_VanD updated to NF012215.1 D_ala_D_lac_VanF-NCBI
1957 HMM Modified: NF012216.1 D_ala_D_lac_VanB updated to NF012216.1 D_ala_D_lac_VanD-NCBI
1958 HMM Modified: NF012217.1 D_ala_D_lac_VanA updated to NF012217.1 D_ala_D_lac_VanB-NCBI
1959 HMM Modified: NF012218.0 erm_38_23S_MT updated to NF012218.0 erm_A_23S_MT-NCBI
1960 HMM Modified: NF012219.1 erm_C_23S_MT updated to NF012219.1 erm_F_23S_MT-NCBI
1961 HMM Modified: NF012220.1 erm_B_23S_MT updated to NF012220.1 erm_C_23S_MT-NCBI
1962 HMM Modified: NF012222.1 erm_A_23S_MT updated to NF012222.1 erm_B_23S_MT-NCBI
1963 HMM Modified: NF012223.0 erm_F_23S_MT updated to NF012223.0 erm_SHROVE-NCBI
1964 HMM Modified: NF012224.1 blaSFH updated to NF012224.1 blaSFH_gen-NCBI
1965 HMM Modified: NF012225.0 blaSFH_gen updated to NF012225.0 blaSGM-NCBI
1966 HMM Modified: NF012229.1 bla_class_B_core updated to NF012229.1 bla_class_C-NCBI
1967 HMM Modified: NF028535.0 ANT_4p_II updated to NF028535.0 ANT_4p_Ia-NCBI
1968 HMM Modified: NF032892.0 fosA7 updated to NF032892.0 fosA8-NCBI
1969 HMM Modified: NF032894.1 APH_3pp_Ia updated to NF032894.1 APH_3pp_Ib-NCBI
1970 HMM Modified: NF032895.1 APH_3pp_Ib updated to NF032895.1 APH_4_Ia-NCBI
1971 HMM Modified: NF032896.1 APH_3pp updated to NF032896.1 APH_3pp_Ia-NCBI
1972 HMM Modified: NF032897.1 APH_3p_V updated to NF032897.1 APH_3p_VI-NCBI
1973 HMM Modified: NF032898.1 APH_3p_II updated to NF032898.1 APH_3p_IIIa-NCBI
1974 HMM Modified: NF033059.2 APH_3p_I updated to NF033059.2 APH_3p_II-NCBI
1975 HMM Modified: NF033060.0 blaBCL updated to NF033060.0 blaBEL-NCBI
1976 HMM Modified: NF033061.1 ANT_4p_I updated to NF033061.1 ANT_4p_II-NCBI
1977 HMM Modified: NF033062.0 APH_3p_VI updated to NF033062.0 APH_3p_VIII-NCBI
1978 HMM Modified: NF033063.0 APH_3p_XV updated to NF033063.0 APH_3pp-NCBI
1979 HMM Modified: NF033064.0 APH_3p_IIIa updated to NF033064.0 APH_3p_IVa-NCBI
1980 HMM Modified: NF033065.0 APH_3p_IVa updated to NF033065.0 APH_3p_V-NCBI
1981 HMM Modified: NF033066.0 APH_3p_VIII updated to NF033066.0 APH_3p_VIIa-NCBI
1982 HMM Modified: NF033067.1 APH_3p_VIIa updated to NF033067.1 APH_3p_XV-NCBI
1983 HMM Modified: NF033068.1 APH_3p updated to NF033068.1 APH_3p_A16-NCBI
1984 HMM Modified: NF033074.0 AAC_6p_Ib updated to NF033074.0 AAC_6p_Id-NCBI
1985 HMM Modified: NF033075.0 AAC_6p_Steno updated to NF033075.0 AAC_6p_Strep-NCBI
1986 HMM Modified: NF033076.0 AAC_6p_Yersi updated to NF033076.0 AAC_6p_set_A-NCBI
1987 HMM Modified: NF033077.0 AAC_6p_A30 updated to NF033077.0 AAC_6p_A31-NCBI
1988 HMM Modified: NF033078.2 AAC_6p_Ia_fam updated to NF033078.2 AAC_6p_Iad-NCBI
1989 HMM Modified: NF033080.0 AAC_3_II updated to NF033080.0 AAC_3_IV-NCBI
1990 HMM Modified: NF033081.0 AAC_3_IV updated to NF033081.0 AAC_3_VIII-NCBI
1991 HMM Modified: NF033082.0 AAC_3 updated to NF033082.0 AAC_3_I-NCBI
1992 HMM Modified: NF033083.0 AAC_3_I updated to NF033083.0 AAC_3_II-NCBI
1993 HMM Modified: NF033084.2 ANT_6 updated to NF033084.2 ANT_6_aadK-NCBI
1994 HMM Modified: NF033085.1 bla_class_C updated to NF033085.1 bla_class_D_alt-NCBI
1995 HMM Modified: NF033087.1 bla_subclass_B2 updated to NF033087.1 bla_subclass_B3-NCBI
1996 HMM Modified: NF033088.1 bla_subclass_B1 updated to NF033088.1 bla_subclass_B2-NCBI
1997 HMM Modified: NF033089.1 blaCTX-M updated to NF033089.1 blaCcrA-NCBI
1998 HMM Modified: NF033090.1 HK_VanS_B updated to NF033090.1 HK_VanS_O-NCBI
1999 HMM Modified: NF033091.0 HK_VanS_ACDEFG updated to NF033091.0 HK_VanS_B-NCBI
2000 HMM Modified: NF033094.0 HK_VanS_O updated to NF033094.0 L2-NCBI
2001 HMM Modified: NF033095.1 bla_Bc_2 updated to NF033095.1 bla_CblA-NCBI
2002 HMM Modified: NF033096.1 bla1 updated to NF033096.1 blaACC-NCBI
2003 HMM Modified: NF033098.1 bla_CblA updated to NF033098.1 bla_CepA-NCBI
2004 HMM Modified: NF033099.1 bla_Exo updated to NF033099.1 bla_class_A-NCBI
2005 HMM Modified: NF033100.1 bla_CfxA updated to NF033100.1 bla_Exo-NCBI
2006 HMM Modified: NF033101.0 blaL updated to NF033101.0 blaL1-NCBI
2007 HMM Modified: NF033102.1 bla_CepA updated to NF033102.1 bla_CfxA-NCBI
2008 HMM Modified: NF033103.1 bla_class_A updated to NF033103.1 bla_class_B_core-NCBI
2009 HMM Modified: NF033104.0 blaOXA-46_like updated to NF033104.0 blaOXA-48_like-NCBI
2010 HMM Modified: NF033105.1 bla_subclass_B3 updated to NF033105.1 bla_xUS-NCBI
2011 HMM Modified: NF033106.1 blaL1 updated to NF033106.1 blaLAP-NCBI
2012 HMM Modified: NF033107.1 blaB updated to NF033107.1 blaBBI-NCBI
2013 HMM Modified: NF033108.1 sensor_BlaR1 updated to NF033108.1 sensor_MecR1-NCBI
2014 HMM Modified: NF033109.1 sensor_MecR1 updated to NF033109.1 stat-NCBI
2015 HMM Modified: NF033111.2 tet_monoox_X updated to NF033111.2 tet_protect-NCBI
2016 HMM Modified: NF033112.0 APH_3p_A16 updated to NF033112.0 APH_3p_I-NCBI
2017 HMM Modified: NF033114.1 phos_trans_CPT updated to NF033114.1 poly_MCR3_broad-NCBI
2018 HMM Modified: NF033115.1 dipept_VanX updated to NF033115.1 efflux_CmlA-NCBI
2019 HMM Modified: NF033117.2 vanR_ACDEGLN updated to NF033117.2 vanR_FM-NCBI
2020 HMM Modified: NF033118.1 vanR-O updated to NF033118.1 vanR_ACDEGLN-NCBI
2021 HMM Modified: NF033120.0 vanR_FM updated to NF033120.0 vanT-CELN-NCBI
2022 HMM Modified: NF033122.1 vanW-B updated to NF033122.1 vanW-G-NCBI
2023 HMM Modified: NF033123.1 vanW-G updated to NF033123.1 vanW-gen-NCBI
2024 HMM Modified: NF033125.2 vanZ-A updated to NF033125.2 vanZ-F-NCBI
2025 HMM Modified: NF033126.1 ANT_3pp_AadA1 updated to NF033126.1 ANT_3pp_AadA3-NCBI
2026 HMM Modified: NF033127.1 ANT_3pp_AadA3 updated to NF033127.1 ANT_3pp_I-NCBI
2027 HMM Modified: NF033128.2 vanW-gen updated to NF033128.2 vanXY-NCBI
2028 HMM Modified: NF033129.1 macro_glyco_Mgt updated to NF033129.1 macrolide_MefA-NCBI
2029 HMM Modified: NF033130.1 AAC_6p_A48 updated to NF033130.1 AAC_6p_A49-NCBI
2030 HMM Modified: NF033131.1 vanT-G-Cterm updated to NF033131.1 vanT-L-cat-NCBI
2031 HMM Modified: NF033132.1 vanT-CELN updated to NF033132.1 vanT-G-Cterm-NCBI
2032 HMM Modified: NF033133.1 vanT-L-cat updated to NF033133.1 vanT-L-mem-NCBI
2033 HMM Modified: NF033135.1 cmx_cmrA updated to NF033135.1 coreg_MerD-NCBI
2034 HMM Modified: NF033136.1 SMR_qac_K updated to NF033136.1 SMR_qac_bcrB-NCBI
2035 HMM Modified: NF033137.0 SMR_qac_int updated to NF033137.0 SMR_qac_pB8-NCBI
2036 HMM Modified: NF033139.1 blaZ updated to NF033139.1 blaZ_gen-NCBI
2037 HMM Modified: NF033140.0 blaZ_mecC_type updated to NF033140.0 bla_B2_CphA-NCBI
2038 HMM Modified: NF033141.0 blaZ_gen updated to NF033141.0 blaZ_mecC_type-NCBI
2039 HMM Modified: NF033142.1 efflux_OM_AdeC updated to NF033142.1 emrE-Resfams
2040 HMM Modified: NF033144.1 rifampin_ARR updated to NF033144.1 rifampin_ARR_Ms-NCBI
2041 HMM Modified: NF033145.1 rif_monoox updated to NF033145.1 rifampin_ARR-NCBI
2042 HMM Modified: NF033148.1 tet_protect_M_W updated to NF033148.1 tet_protect_Q-NCBI
2043 HMM Modified: NF033149.0 CHL_hydrolase updated to NF033149.0 CMY2-MIR-ACT-EC-NCBI
2044 HMM Modified: NF033150.1 AAC_6p_A49 updated to NF033150.1 AAC_6p_Acine-NCBI
2045 HMM Modified: NF033151.0 AAC_6p_A10 updated to NF033151.0 AAC_6p_A29-NCBI
2046 HMM Modified: NF033152.0 BlaA_Yent updated to NF033152.0 BlaEC-NCBI
2047 HMM Modified: NF033156.1 ble_BLMA_gen updated to NF033156.1 ble_BLMT-NCBI
2048 HMM Modified: NF033159.0 blaPAC updated to NF033159.0 blaPAU-NCBI
2049 HMM Modified: NF033174.0 blaPSV updated to NF033174.0 blaR1_generic-NCBI
2050 HMM Modified: NF033180.1 AAC_3_VIII updated to NF033180.1 AAC_3_VIa-NCBI
2051 HMM Modified: NF033182.0 linco_LnuG updated to NF033182.0 linco_LnuP-NCBI
2052 HMM Modified: NF033204.1 blaRUB updated to NF033204.1 blaSCO-NCBI
2053 HMM Modified: NF033209.1 16S_rRNA_Rmt_B updated to NF033209.1 16S_rRNA_Rmt_C-NCBI
2054 HMM Modified: NF033211.1 blaCRH updated to NF033211.1 blaCSA-NCBI
2055 HMM Modified: NF033220.1 ANT_3pp_II updated to NF033220.1 ANT_4p_I-NCBI
2056 HMM Modified: NF033221.1 aadE-Cc updated to NF033221.1 acid_shock_Asr-NCBI
2057 HMM Modified: NF033374.6 AAC_6p_Id updated to NF033374.6 AAC_6p_Ie-NCBI
2058 HMM Modified: NF033375.2 penta_rpt_QnrE updated to NF033375.2 penta_rpt_QnrS-NCBI
2059 HMM Modified: NF033378.1 MECD_PBP updated to NF033378.1 MFS_efflux_PexA-NCBI
2060 HMM Modified: NF033386.1 blaARL updated to NF033386.1 blaAXC-NCBI
2061 HMM Modified: NF033387.1 ANT_6_aadS updated to NF033387.1 ANT_6_str-NCBI
2062 HMM Modified: NF033398.1 rRNA_meth_EmtA updated to NF033398.1 ribo_prot_ABC_F-NCBI
2063 HMM Modified: NF033405.1 FosL updated to NF033405.1 FosX-NCBI
2064 HMM Modified: NF033406.1 blaMCA updated to NF033406.1 blaMSI-1_fam-NCBI
2065 HMM Modified: NF033408.5 polymyxin_MCR3 updated to NF033408.5 polymyxin_MCR4-NCBI
2066 HMM Modified: NF033409.0 poly_MCR3_broad updated to NF033409.0 polymyxin_MCR1-NCBI
2067 HMM Modified: NF033462.1 polymyxin_MCR4 updated to NF033462.1 polymyxin_MCR5-NCBI
2068 HMM Modified: NF033463.1 polymyxin_MCR5 updated to NF033463.1 polymyxin_MCR6-NCBI
2069 HMM Modified: NF033466.0 blaRCP updated to NF033466.0 blaRHO-NCBI
2070 HMM Modified: NF033467.0 blaAQU updated to NF033467.0 blaARL-NCBI
2071 HMM Modified: NF033468.1 stregram_VatI updated to NF033468.1 tet_ABC_46_A-NCBI
2072 HMM Modified: NF033469.1 SMR_qac_bcrB updated to NF033469.1 SMR_qac_bcrC-NCBI
2073 HMM Modified: NF033470.1 SMR_qac_bcrC updated to NF033470.1 SMR_qac_int-NCBI
2074 HMM Modified: NF033472.1 AAC_2p_IIb updated to NF033472.1 AAC_2p_Ia-NCBI
2075 HMM Modified: NF033473.1 trim_DfrE updated to NF033473.1 trim_DfrF-NCBI
2076 HMM Modified: NF033476.1 tet_destruct updated to NF033476.1 tet_monoox_X-NCBI
2077 HMM Modified: NF033502.0 Sul4 updated to NF033502.0 TlmB-NCBI
2078 HMM Modified: NF033509.1 blaOXA-22_like updated to NF033509.1 blaOXA-23_like-NCBI
2079 HMM Modified: NF033555.1 lyase_MerB updated to NF033555.1 macro_glyco_Mgt-NCBI
2080 HMM Modified: NF033560.1 merT_RC607 updated to NF033560.1 myrA-NCBI
2081 HMM Modified: NF033565.0 trans_MerF updated to NF033565.0 trans_reg_VanU-NCBI
2082 HMM Modified: NF033568.1 blaROB updated to NF033568.1 blaRUB-NCBI
2083 HMM Modified: NF033569.1 blaLHK updated to NF033569.1 blaLUT-NCBI
2084 HMM Modified: NF033574.1 VarG_fam_MBL updated to NF033574.1 Vat_ABCDEFH-NCBI
2085 HMM Modified: NF033575.1 blaRHO updated to NF033575.1 blaROB-NCBI
2086 HMM Modified: NF033582.2 blaALI updated to NF033582.2 blaAQU-NCBI
2087 HMM Modified: NF033584.1 blaPST updated to NF033584.1 blaPSV-NCBI
2088 HMM Modified: NF033585.1 blaTTU updated to NF033585.1 blaTUS-NCBI
2089 HMM Modified: NF033612.0 AAC_3_VIa updated to NF033612.0 AAC_3_XI-NCBI
2090 HMM Modified: NF033613.1 blaOXA-576_like updated to NF033613.1 blaOXA-58_like-NCBI
2091 HMM Modified: NF033614.1 APH_6_Ic_gen updated to NF033614.1 APH_6_Steno-NCBI
2092 HMM Modified: NF033626.1 blaBKC_GPC updated to NF033626.1 blaBPU-NCBI
2093 HMM Modified: NF033627.3 intimin_all updated to NF033627.3 intimin_alpha-NCBI
2094 HMM Modified: NF033636.1 acid_shock_Asr updated to NF033636.1 adeC-adeK-oprM-Resfams
2095 HMM Modified: NF033637.1 transloc_TIR updated to NF033637.1 transport_merC-NCBI
2096 HMM Modified: NF033639.1 intimin_alpha updated to NF033639.1 linco_LnuA-NCBI
2097 HMM Modified: NF033646.1 toxin_EAST1 updated to NF033646.1 trans_MerF-NCBI
2098 HMM Modified: NF033648.1 blaOXA-274_like updated to NF033648.1 blaOXA-286_like-NCBI
2099 HMM Modified: NF033658.1 Shiga_Stx1A updated to NF033658.1 Shiga_Stx1B-NCBI
2100 HMM Modified: NF033659.0 Shiga_Stx1B updated to NF033659.0 Shiga_Stx2A-NCBI
2101 HMM Modified: NF033660.0 Shiga_Stx2B updated to NF033660.0 SubclassA2-NCBI
2102 HMM Modified: NF033661.1 Shiga_Stx2A updated to NF033661.1 Shiga_Stx2B-NCBI
2103 HMM Modified: NF033666.1 blaOXA-727_like updated to NF033666.1 blaOXA-85_like-NCBI
2104 HMM Modified: NF033667.1 blaOXA-55_like updated to NF033667.1 blaOXA-576_like-NCBI
2105 HMM Modified: NF033669.1 polymyxin_MCR8 updated to NF033669.1 polymyxin_MCR9-NCBI
2106 HMM Modified: NF033670.1 polymyxin_MCR6 updated to NF033670.1 polymyxin_MCR7-NCBI
2107 HMM Modified: NF033671.1 polymyxin_MCR7 updated to NF033671.1 polymyxin_MCR8-NCBI
2108 HMM Modified: NF033692.1 APH_2pp_I_a_f_h updated to NF033692.1 APH_2pp_Ia-NCBI
2109 HMM Modified: NF033693.0 AAC_6p_Ie_fam updated to NF033693.0 AAC_6p_If-NCBI
2110 HMM Modified: NF033698.1 blaCSA updated to NF033698.1 blaCTX-M-NCBI
2111 HMM Modified: NF033700.1 blaCMA updated to NF033700.1 blaCME-NCBI
2112 HMM Modified: NF033702.0 blaOXA-12_like updated to NF033702.0 blaOXA-134_like-NCBI
2113 HMM Modified: NF033714.1 blaBBI updated to NF033714.1 blaBCL-NCBI
2114 HMM Modified: NF033727.1 chaperon_ArsD updated to NF033727.1 chloram_CatA-NCBI
2115 HMM Modified: NF033736.1 blaAFM updated to NF033736.1 blaAIM-NCBI
2116 HMM Modified: NF033781.1 chaper_CopP updated to NF033781.1 chaperon_ArsD-NCBI
2117 HMM Modified: NF033783.1 coreg_MerD updated to NF033783.1 cyto_nec_fctrs-NCBI
2118 HMM Modified: NF033784.1 transport_merC updated to NF033784.1 trim_DfrA10-NCBI
2119 HMM Modified: NF033786.1 phenyl_MerG updated to NF033786.1 phos_trans_CPT-NCBI
2120 HMM Modified: NF033815.0 blaOXA-364_like updated to NF033815.0 blaOXA-372_like-NCBI
2121 HMM Modified: NF033818.0 blaOXA-114_like updated to NF033818.0 blaOXA-12_like-NCBI
2122 HMM Modified: NF033834.1 RND_adapt_MexA updated to NF033834.1 RND_perm_OqxB-NCBI
2123 HMM Modified: NF033836.1 polymyxin_MCR9 updated to NF033836.1 qac_MFS_AB-NCBI
2124 HMM Modified: NF033851.1 trim_DfrA35 updated to NF033851.1 trim_DfrA36-NCBI
2125 HMM Modified: NF033866.1 blaCDD updated to NF033866.1 blaCIA-NCBI
2126 HMM Modified: NF033867.1 blaPAU updated to NF033867.1 blaPDC-NCBI
2127 HMM Modified: NF033868.0 trim_DfrA36 updated to NF033868.0 trim_DfrA3b-NCBI
2128 HMM Modified: NF033877.0 arsB_Sta_pI258 updated to NF033877.0 betalact_A_Burk_PenA-NCBI
2129 HMM Modified: NF033895.1 blaCAM updated to NF033895.1 blaCAU-NCBI
2130 HMM Modified: NF033929.1 blaAXC updated to NF033929.1 blaB-IND-MUS-NCBI
2131 HMM Modified: NF033933.0 fosA8 updated to NF033933.0 fusB-NCBI
2132 HMM Modified: TIGR02052.1 TIGR02052 updated to TIGR02052.1 MexE-Resfams
2133 HMM Modified: TIGR02053.1 TIGR02053 updated to TIGR02053.1 MerP-TIGRFAMs
2134 - Protein family changes:
2135 Total: Added 28
2136 Total: Prev. Release 1499
2137 Total: Removed 0
2138 Total: This Release 1527
2139 Family Added: hmm_id #fam_id
2140 Family Added: - afaC
2141 Family Added: - bin_CdtA
2142 Family Added: - bin_CdtB
2143 Family Added: - bmaE
2144 Family Added: - cvaC
2145 Family Added: - emrD
2146 Family Added: - focG
2147 Family Added: - ibeA
2148 Family Added: - iutA
2149 Family Added: - mcr-10
2150 Family Added: - papA
2151 Family Added: - papC
2152 Family Added: - papE
2153 Family Added: - papG
2154 Family Added: - papG-I
2155 Family Added: - papG-II
2156 Family Added: - papG-III
2157 Family Added: - papH
2158 Family Added: - sfaF
2159 Family Added: - tcdA
2160 Family Added: - tcdB
2161 Family Added: - tcdC
2162 Family Added: - tcdE
2163 Family Added: - tcdR
2164 Family Added: - tcd_gen
2165 Family Added: - tva(A)
2166 Family Added: - tva(B)
2167 Family Changed: - blaOXA-266_fam updated to NF033653.1 blaOXA-266_fam
2168
2169 ---------------------------------------------------------------------
2170 Changes included in 2019-09-06.1
2171 ---------------------------------------------------------------------
2172
2173 This release just removes two accidentally included "plus" proteins. We
2174 suggest you switch to AMRFinderPlus. See https://github.com/ncbi/amr/wiki for
2175 information an how to install since we will be dropping support for this
2176 version of AMRFinder soon.
2177
2178 - Protein changes:
2179 Total: Added 0
2180 Total: Prev. Release 5984
2181 Total: Removed 2
2182 Total: This Release 5982
2183 Protein Removed: AAB91079.1 bind_CopB copper-binding_protein_CopB
2184 Protein Removed: BAB62907.1 cofA type_IV_pilus_CFA/III_major_pilin
2185
2186 ---------------------------------------------------------------------
2187 Changes included in 2019-09-6.1
2188 ---------------------------------------------------------------------
2189
2190 This release removes three erroniously included proteins that were provided by
2191 collaborators, but accidentally released before review by curators. these
2192 sequences do not match the family, gene symbol, or protein name of the
2193 virulence and stress response families to which they had been added. There are
2194 no other changes.
2195
2196 We will add controls to the database publication system to programmatically
2197 require that curators have manually reviewed all protein sequences before they
2198 become public.
2199
2200 - Reference Gene Catalog protein and allele changes:
2201 Total in prev: 6274
2202 Total in release: 6271
2203 Removed: 3
2204 Added: 0
2205 Changed: 0
2206 Removed copB AAB91079.1
2207 Removed aaiC AHW84565.1
2208 Removed cofA BAB62907.1
2209
2210 ---------------------------------------------------------------------
2211 Changes included in 2019-08-27.1
2212 ---------------------------------------------------------------------
2213
2214 This release includes a new database file to correspond with AMRFinderPlus
2215 version 3.1 that includes information for blacklisting of a few "plus" proteins
2216 common in some organisms that are interesting when found in others. This
2217 release also includes the usual new AMR genes and alleles; the fixing of some
2218 typos; removal of a redundant point mutation reference sequence; and the
2219 addition, reoorganization, and renaming of some "plus" genes.
2220
2221 - Reference Gene Catalog protein and allele changes:
2222
2223 Total in prev: 6110
2224 Total in release: 6274
2225 Removed: 18
2226 Added: 182
2227 Changed: 33
2228 Removed emrD3 WP_000850833.1
2229 Removed blaOXA-671 WP_016660101.1
2230 Removed arsB-mob WP_063116263.1
2231 Removed gyrA_A67S WP_001281242.1
2232 Removed gyrA_A84P WP_001281242.1
2233 Removed gyrA_D87G WP_001281242.1
2234 Removed gyrA_D87H WP_001281242.1
2235 Removed gyrA_D87N WP_001281242.1
2236 Removed gyrA_D87V WP_001281242.1
2237 Removed gyrA_D87Y WP_001281242.1
2238 Removed gyrA_G81C WP_001281242.1
2239 Removed gyrA_H80P WP_001281242.1
2240 Removed gyrA_N57K WP_001281242.1
2241 Removed gyrA_Q106H WP_001281242.1
2242 Removed gyrA_S83F WP_001281242.1
2243 Removed gyrA_S83I WP_001281242.1
2244 Removed gyrA_S83L WP_001281242.1
2245 Removed gyrA_S83W WP_001281242.1
2246 Added arsB AAA21095.1
2247 Added arsC AAA21096.1
2248 Added arsR AAA25636.1
2249 Added arsB AAA25637.1
2250 Added copC AAA25808.1
2251 Added arsR AAA27587.1
2252 Added arsB AAA27588.1
2253 Added arsR AAB09624.1
2254 Added arsC AAB09628.1
2255 Added arsC AAB42203.1
2256 Added arsB AAB42204.1
2257 Added ipaH9.8 AAC23714.1
2258 Added pic AAD23953.1
2259 Added efa1 AAD49229.2
2260 Added iha AAG55323.1
2261 Added stb AAK29747.1
2262 Added efa1 AAL57562.1
2263 Added pic AAN78833.1
2264 Added iha AAN82058.1
2265 Added cif AAQ07241.1
2266 Added iha AAT68782.1
2267 Added efa1 AAV91321.1
2268 Added sab AAZ76500.1
2269 Added senB AAZ89288.1
2270 Added iha ABB17254.1
2271 Added emrD3 ABQ18953.1
2272 Added kdeA ABR76310.1
2273 Added lmrC ABX00624.1
2274 Added iha ACB20136.1
2275 Added iha ACD08748.1
2276 Added amvA ACQ82816.1
2277 Added ipaH4 ADA74402.1
2278 Added iha ADI47068.1
2279 Added iha ADN47767.1
2280 Added arsR ADZ44504.1
2281 Added iha AEQ14190.1
2282 Added stb AET14866.1
2283 Added arsR AET17094.1
2284 Added pic AFS72825.1
2285 Added iha AFS75030.1
2286 Added asr BAA15331.2
2287 Added arsB BAA24823.1
2288 Added arsC BAA24824.1
2289 Added espK BAB34991.1
2290 Added fieF BAB89353.1
2291 Added fieF BAE77395.1
2292 Added arsR BAE77793.1
2293 Added cif BAG66370.1
2294 Added iha BAI27255.1
2295 Added efa1 BAI32294.1
2296 Added iha CAC39288.1
2297 Added efa1 CAC81883.1
2298 Added efa1 CAD30848.1
2299 Added stb CAD87835.1
2300 Added iha CAE55782.1
2301 Added efa1 CAI43818.1
2302 Added hlyA-alpha CAQ77251.1
2303 Added iha CAR09712.2
2304 Added pic CAU99295.1
2305 Added iha CBW53086.1
2306 Added ipaH5 EID63069.1
2307 Added fosB WP_000920239.1
2308 Added dfrA36 WP_000949574.1
2309 Added mphM WP_001041372.1
2310 Added cfr(B) WP_002405682.1
2311 Added mphK WP_003246254.1
2312 Added blaPDC-374 WP_003454242.1
2313 Added tet(56) WP_003635403.1
2314 Added blaCDD-1 WP_009901927.1
2315 Added mphH WP_015776248.1
2316 Added erm(49) WP_019728092.1
2317 Added blaCDD-2 WP_021361759.1
2318 Added mphN WP_024127776.1
2319 Added tet(X) WP_024160783.1
2320 Added blaPDC-361 WP_031638595.1
2321 Added tet(G) WP_032489471.1
2322 Added vga(E) WP_032495718.1
2323 Added blaACT-72 WP_045895620.1
2324 Added blaACT-70 WP_047364854.1
2325 Added blaACT-69 WP_048209719.1
2326 Added ble WP_063842967.1
2327 Added blaOXA-671 WP_081401608.1
2328 Added icr-Mo WP_082741435.1
2329 Added blaOXA-653 WP_087554513.1
2330 Added tet(X) WP_094309310.1
2331 Added blaMOX-13 WP_096807444.1
2332 Added blaFOX-15 WP_096807445.1
2333 Added blaCMY-157 WP_096807446.1
2334 Added blaIMP-69 WP_099156051.1
2335 Added blaPDC-249 WP_104009845.1
2336 Added blaACT-58 WP_111965422.1
2337 Added blaACT-62 WP_111967096.1
2338 Added blaACT-63 WP_112780466.1
2339 Added blaOXA-727 WP_114272532.1
2340 Added blaOXA-731 WP_116786833.1
2341 Added blaOXA-728 WP_116786835.1
2342 Added blaPDC-367 WP_121286063.1
2343 Added blaPDC-364 WP_121347819.1
2344 Added blaFLC-1 WP_123061077.1
2345 Added blaPDC-371 WP_126118969.1
2346 Added blaPDC-353 WP_128550481.1
2347 Added blaVIM-67 WP_142875125.1
2348 Added blaADC-196 WP_145850033.1
2349 Added blaAQU WP_148044401.1
2350 Added blaAQU WP_148044402.1
2351 Added dfrA29 WP_148044403.1
2352 Added blaCAM-1 WP_148044405.1
2353 Added blaCMY-165 WP_148044406.1
2354 Added blaCMY-166 WP_148044407.1
2355 Added blaCMY-167 WP_148044408.1
2356 Added blaCTX-M-227 WP_148044409.1
2357 Added blaCTX-M-228 WP_148044410.1
2358 Added blaCTX-M-229 WP_148044411.1
2359 Added blaDHA-29 WP_148044412.1
2360 Added blaGES-42 WP_148044413.1
2361 Added blaGES-43 WP_148044414.1
2362 Added blaIMP-82 WP_148044416.1
2363 Added blaIMP-83 WP_148044417.1
2364 Added blaIMP-84 WP_148044418.1
2365 Added blaKPC-41 WP_148044419.1
2366 Added blaKPC-45 WP_148044420.1
2367 Added blaKPC-46 WP_148044421.1
2368 Added blaOXA-835 WP_148044422.1
2369 Added blaOXA-836 WP_148044423.1
2370 Added blaPAU-1 WP_148044424.1
2371 Added blaPDC-196 WP_148044425.1
2372 Added blaPDC-334 WP_148044426.1
2373 Added blaPDC-335 WP_148044427.1
2374 Added blaPDC-336 WP_148044428.1
2375 Added blaPDC-337 WP_148044429.1
2376 Added blaPDC-338 WP_148044430.1
2377 Added blaPDC-339 WP_148044431.1
2378 Added blaPDC-340 WP_148044432.1
2379 Added blaPDC-341 WP_148044433.1
2380 Added blaPDC-342 WP_148044434.1
2381 Added blaPDC-343 WP_148044435.1
2382 Added blaPDC-344 WP_148044436.1
2383 Added blaPDC-345 WP_148044437.1
2384 Added blaPDC-346 WP_148044438.1
2385 Added blaPDC-347 WP_148044439.1
2386 Added blaPDC-348 WP_148044440.1
2387 Added blaPDC-349 WP_148044441.1
2388 Added blaPDC-350 WP_148044442.1
2389 Added blaPDC-351 WP_148044443.1
2390 Added blaPDC-352 WP_148044444.1
2391 Added blaPDC-354 WP_148044445.1
2392 Added blaPDC-355 WP_148044446.1
2393 Added blaPDC-356 WP_148044447.1
2394 Added blaPDC-357 WP_148044448.1
2395 Added blaPDC-358 WP_148044449.1
2396 Added blaPDC-359 WP_148044450.1
2397 Added blaPDC-360 WP_148044451.1
2398 Added blaPDC-362 WP_148044452.1
2399 Added blaPDC-363 WP_148044453.1
2400 Added blaPDC-365 WP_148044454.1
2401 Added blaPDC-366 WP_148044455.1
2402 Added blaPDC-368 WP_148044456.1
2403 Added blaPDC-369 WP_148044457.1
2404 Added blaPDC-370 WP_148044458.1
2405 Added blaPDC-372 WP_148044459.1
2406 Added blaPDC-373 WP_148044460.1
2407 Added blaPDC-375 WP_148044461.1
2408 Added blaPDC-376 WP_148044462.1
2409 Added blaPDC-377 WP_148044463.1
2410 Added blaPDC-378 WP_148044464.1
2411 Added blaPDC-379 WP_148044465.1
2412 Added blaPDC-380 WP_148044466.1
2413 Added blaPDC-381 WP_148044467.1
2414 Added blaPDC-382 WP_148044468.1
2415 Added blaPDC-383 WP_148044469.1
2416 Added blaPFM-1 WP_148044470.1
2417 Added blaTEM-241 WP_148044472.1
2418 Added blaTEM-242 WP_148044473.1
2419 Added blaTEM-39 WP_148044474.1
2420 Added blaVEB-22 WP_148044475.1
2421 Added blaVIM-68 WP_148044476.1
2422 Added mcr-1.22 WP_148044477.1
2423 Added mcr-5.4 WP_148044478.1
2424 Added blaOXA-837 WP_148281568.1
2425 Added gyrA_H80P WP_001281243.1
2426 Added gyrA_N57K WP_001281243.1
2427 Added gyrA_S83F WP_001281243.1
2428 Changes:
2429 faeG AAA24032.1
2430 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2431 faeG AAA24035.1
2432 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2433 faeG AAA24390.1
2434 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2435 nccX AAA65102.1
2436 subclass METAL ->
2437 merB AAA88369.1
2438 class MECURY -> MERCURY
2439 subclass ORGANOMECURY -> ORGANOMERCURY
2440 merC AAC33908.1
2441 class MECURY -> MERCURY
2442 subclass ORGANOMECURY -> ORGANOMERCURY
2443 faeG AAC34727.1
2444 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2445 merB AAC38230.1
2446 class MECURY -> MERCURY
2447 subclass ORGANOMECURY -> ORGANOMERCURY
2448 merC AAC38233.1
2449 class MECURY -> MERCURY
2450 subclass ORGANOMECURY -> ORGANOMERCURY
2451 ipaH2 AAN43435.1
2452 gene_family ipaH9.8 -> ipaH2
2453 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2
2454 mreA AAN68577.1
2455 subclass METAL ->
2456 ipaH2 AAZ87985.1
2457 gene_family ipaH9.8 -> ipaH2
2458 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2
2459 ipaH3 ABB62096.1
2460 gene_family ipaH9.8 -> ipaH3
2461 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH3
2462 ipaH2 ABB62098.1
2463 gene_family ipaH9.8 -> ipaH2
2464 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2
2465 ipaH2 ABB66229.1
2466 gene_family ipaH9.8 -> ipaH2
2467 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2
2468 ipaH1 ABF02983.1
2469 gene_family ipaH9.8 -> ipaH1
2470 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH1/H6
2471 ipaH2 ABF04028.1
2472 gene_family ipaH9.8 -> ipaH2
2473 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2
2474 faeG ACB72721.1
2475 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2476 ipaH2 ACD09076.1
2477 gene_family ipaH9.8 -> ipaH2
2478 product_name T3SS effector E3 ubiquitin-protein ligase IpaH9.8 -> T3SS effector E3 ubiquitin-protein ligase IpaH2
2479 faeG AFH14350.1
2480 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2481 merC BAA14138.2
2482 class MECURY -> MERCURY
2483 subclass ORGANOMECURY -> ORGANOMERCURY
2484 merB BAA20338.2
2485 class MECURY -> MERCURY
2486 subclass ORGANOMECURY -> ORGANOMERCURY
2487 merG BAA23166.1
2488 class MECURY -> MERCURY
2489 merB BAB47641.1
2490 class MECURY -> MERCURY
2491 subclass ORGANOMECURY -> ORGANOMERCURY
2492 merB CAC86907.1
2493 class MECURY -> MERCURY
2494 subclass ORGANOMECURY -> ORGANOMERCURY
2495 faeG CAE82650.1
2496 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2497 faeG CAE82653.1
2498 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2499 faeG CAE82670.1
2500 product_name F4 fimbrial adhesin subunit FaeG -> F4 (K88) fimbrial adhesin subunit FaeG
2501 mphL WP_002047670.1
2502 gene_family mph(B) -> mphL
2503 product_name Mph(B) family macrolide 2'-phosphotransferase -> macrolide 2'-phosphotransferase MphL
2504 poxtA WP_002415638.1
2505 genbank_cds_start 1856 -> 57639
2506 genbank_cds_stop 3484 -> 59267
2507 genbank_nucleotide_accession MF095097.1 -> MH746818.1
2508 mcr-3.22 WP_094308975.1
2509 refseq_nucleotide_accession NG_060581.1 -> NG_060581.2
2510 blaPDC-259 WP_109791193.1
2511 genbank_nucleotide_accession MH243333.1 -> MH243333.2
2512 refseq_nucleotide_accession NG_057591.1 -> NG_057591.2
2513 blaPDC-265 WP_109791199.1
2514 genbank_nucleotide_accession MH243339.1 -> MH243339.2
2515 refseq_nucleotide_accession NG_057597.1 -> NG_057597.2
2516
2517 - HMM library Changes:
2518 Total: Added 6
2519 Total: Prev. Release 603
2520 Total: Removed 1
2521 Total: This Release 608
2522 HMM Removed: NF000274.2 PF04439
2523 HMM Added: NF007456.1 PRK10026.1
2524 HMM Added: NF033636.1 acid_shock_Asr
2525 HMM Added: NF033877.0 arsB_Sta_pI258
2526 HMM Added: NF033895.1 blaCAM
2527 HMM Added: NF033929.1 blaAXC
2528 HMM Added: NF033933.0 fosA8
2529
2530 - Protein family changes:
2531 Total: Added 47
2532 Total: Prev. Release 1454
2533 Total: Removed 1
2534 Total: This Release 1500
2535 Family Removed: - ubiq_IpaH3
2536 Family Added: - ACID
2537 Family Added: - CDF_efflux
2538 Family Added: - amvA
2539 Family Added: NF033877.0 arsB_pI258
2540 Family Added: - arsB_pKW301
2541 Family Added: - arsB_pYV
2542 Family Added: NF007456.1 arsC_gluta
2543 Family Added: - arsR
2544 Family Added: - arsR_K-12
2545 Family Added: - arsR_R46
2546 Family Added: - arsR_pI258
2547 Family Added: - arsR_pKW301
2548 Family Added: - arsR_pSX267
2549 Family Added: - arsR_pYV
2550 Family Added: NF033636.1 asr
2551 Family Added: NF033929.1 blaAXC
2552 Family Added: NF033895.1 blaCAM
2553 Family Added: - blaPFM
2554 Family Added: - cif
2555 Family Added: - copC_Psyr
2556 Family Added: - dfrA29
2557 Family Added: - efa1
2558 Family Added: - erm(49)
2559 Family Added: - espK
2560 Family Added: - fieF
2561 Family Added: NF033933.0 fosA8
2562 Family Added: - hlyA-alpha
2563 Family Added: - icr-Mo
2564 Family Added: - iha
2565 Family Added: - ipaH1
2566 Family Added: - ipaH2
2567 Family Added: - ipaH3
2568 Family Added: - ipaH4
2569 Family Added: - ipaH5
2570 Family Added: - ipa_gen
2571 Family Added: - kdeA
2572 Family Added: - lmrC_abcf
2573 Family Added: - mphH
2574 Family Added: - mphK
2575 Family Added: - mphL
2576 Family Added: - mphM
2577 Family Added: - mphN
2578 Family Added: - pic_auto
2579 Family Added: - sab
2580 Family Added: - senB
2581 Family Added: - stb
2582 Family Added: - tet(56)
2583 Family Changed: NF000274.2 ant6_gen updated to - ant6_gen
2584
2585 ---------------------------------------------------------------------
2586 Changes included in 2019-07-10.1
2587 ---------------------------------------------------------------------
2588
2589 New alleles and sequences were added, a few product names were made more
2590 specific as more phenotype information became available. Cleanup of the
2591 database caused some families and HMMs not used by AMRFinderPlus to be removed.
2592
2593 - Protein changes:
2594 Total: Added 57
2595 Total: Prev. Release 5757
2596 Total: Removed 3
2597 Total: This Release 5811
2598 Protein Removed: WP_029728367.1 blaB BlaB_family_subclass_B1_metallo-beta-lactamase
2599 Protein Removed: WP_063842622.1 blaB BlaB_family_subclass_B1_metallo-beta-lactamase
2600 Protein Removed: WP_063842629.1 blaGOB GOB_family_subclass_B3_metallo-beta-lactamase
2601 Protein Added: AAA21095.1 arsB_R773 arsenite_efflux_transporter_membrane_subunit_ArsB
2602 Protein Added: ABQ18953.1 emrD3 multidrug_efflux_MFS_transporter_EmrD-3
2603 Protein Added: WP_000850833.1 emrD3 multidrug_efflux_MFS_transporter_EmrD-3
2604 Protein Added: WP_010446567.1 tet(B) tetracycline_efflux_MFS_transporter_Tet(B)
2605 Protein Added: WP_039902635.1 blaOXA-134_like OXA-134_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-646
2606 Protein Added: WP_063116263.1 arsB_R773 arsenite_efflux_transporter_membrane_subunit_ArsB
2607 Protein Added: WP_063844329.1 dfrA12 trimethoprim-resistant_dihydrofolate_reductase_DfrA12
2608 Protein Added: WP_063856066.1 tet(B) tetracycline_efflux_MFS_transporter_Tet(B)
2609 Protein Added: WP_063856068.1 tet(B) tetracycline_efflux_MFS_transporter_Tet(B)
2610 Protein Added: WP_070342370.1 dfrA7 trimethoprim-resistant_dihydrofolate_reductase_DfrA7
2611 Protein Added: WP_071593205.1 aadA1bt ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA1bt
2612 Protein Added: WP_071593208.1 aadA1bt ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA1bt
2613 Protein Added: WP_086264536.1 blaOXA-213_like OXA-213_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-832
2614 Protein Added: WP_094323230.1 mcr-2 phosphoethanolamine--lipid_A_transferase_MCR-2.3
2615 Protein Added: WP_110174956.1 blaTEM class_A_beta-lactamase_TEM-235
2616 Protein Added: WP_125052736.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-834
2617 Protein Added: WP_129336087.1 mcr-1 phosphoethanolamine--lipid_A_transferase_MCR-1.19
2618 Protein Added: WP_135350920.1 blaGES class_A_beta-lactamase_GES-41
2619 Protein Added: WP_140423191.1 aac(6')-Ib AAC(6')-Ib_family_aminoglycoside_6'-N-acetyltransferase
2620 Protein Added: WP_140423278.1 aadA1 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA1
2621 Protein Added: WP_140423279.1 aadA2 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA2
2622 Protein Added: WP_140423280.1 aadA2 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA2
2623 Protein Added: WP_140423281.1 aadA2 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA2
2624 Protein Added: WP_140423282.1 aadA5 ANT(3'')-Ia_family_aminoglycoside_nucleotidyltransferase_AadA5
2625 Protein Added: WP_140423283.1 dfrA1 trimethoprim-resistant_dihydrofolate_reductase_DfrA1
2626 Protein Added: WP_140423284.1 dfrA12 trimethoprim-resistant_dihydrofolate_reductase_DfrA12
2627 Protein Added: WP_140423285.1 dfrA17 trimethoprim-resistant_dihydrofolate_reductase_DfrA17
2628 Protein Added: WP_140423286.1 dfrA17 trimethoprim-resistant_dihydrofolate_reductase_DfrA17
2629 Protein Added: WP_140423287.1 dfrA17 trimethoprim-resistant_dihydrofolate_reductase_DfrA17
2630 Protein Added: WP_140423305.1 blaADC class_C_beta-lactamase_ADC-195
2631 Protein Added: WP_140423306.1 blaB subclass_B1_metallo-beta-lactamase_BlaB-15
2632 Protein Added: WP_140423307.1 blaCMY class_C_beta-lactamase_CMY-164
2633 Protein Added: WP_140423308.1 blaFRI carbapenem-hydrolyzing_class_A_beta-lactamase_FRI-8
2634 Protein Added: WP_140423309.1 blaFRI carbapenem-hydrolyzing_class_A_beta-lactamase_FRI-9
2635 Protein Added: WP_140423310.1 blaIMI carbapenem-hydrolyzing_class_A_beta-lactamase_IMI-19
2636 Protein Added: WP_140423311.1 blaKPC carbapenem-hydrolyzing_class_A_beta-lactamase_KPC-44
2637 Protein Added: WP_140423312.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-643
2638 Protein Added: WP_140423313.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-644
2639 Protein Added: WP_140423314.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-645
2640 Protein Added: WP_140423315.1 blaOXA-134_like OXA-134_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-647
2641 Protein Added: WP_140423316.1 blaOXA-134_like OXA-134_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-648
2642 Protein Added: WP_140423317.1 blaOXA-211_like OXA-211_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-650
2643 Protein Added: WP_140423318.1 blaOXA-143_like OXA-143_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-825
2644 Protein Added: WP_140423319.1 blaOXA-213_like OXA-213_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-826
2645 Protein Added: WP_140423320.1 blaOXA-10_like OXA-10_family_class_D_beta-lactamase_OXA-827
2646 Protein Added: WP_140423321.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-828
2647 Protein Added: WP_140423322.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-829
2648 Protein Added: WP_140423323.1 blaOXA-51_like OXA-51_family_carbapenem-hydrolyzing_class_D_beta-lactamase_OXA-831
2649 Protein Added: WP_140423324.1 blaOXA-48_like OXA-48_family_class_D_beta-lactamase_OXA-833
2650 Protein Added: WP_140423325.1 blaPDC class_C_beta-lactamase_PDC-333
2651 Protein Added: WP_140423326.1 blaPOM subclass_B3_metallo-beta-lactamase_POM-2
2652 Protein Added: WP_140423327.1 blaVIM subclass_B1_metallo-beta-lactamase_VIM-64
2653 Protein Added: WP_140423328.1 blaVIM subclass_B1_metallo-beta-lactamase_VIM-65
2654 Protein Added: WP_140423329.1 mcr-1 phosphoethanolamine--lipid_A_transferase_MCR-1.20
2655 Protein Added: WP_140423330.1 mcr-1 phosphoethanolamine--lipid_A_transferase_MCR-1.21
2656 Protein Added: WP_140423331.1 mcr-3 phosphoethanolamine--lipid_A_transferase_MCR-3.26
2657 Protein Added: WP_140423332.1 mcr-3 phosphoethanolamine--lipid_A_transferase_MCR-3.30
2658 Protein Modified: ACM67153.1 lamda-2 intimin_type_lambda updated to ACM67153.1 lambda-2 intimin_type_lambda
2659 Protein Modified: WP_001100753.1 blaPER class_A_extended-spectrum_beta-lactamase_PER-1 updated to WP_001100753.1 blaPER inhibitor-resistant_class_A_extended-spectrum_beta-lactamase_PER-1
2660 Protein Modified: WP_002317273.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_002317273.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR
2661 Protein Modified: WP_002368697.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_002368697.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR
2662 Protein Modified: WP_032489743.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_032489743.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR
2663 Protein Modified: WP_063856719.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_063856719.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR
2664 Protein Modified: WP_063856723.1 vanR-B VanB-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_063856723.1 vanR-B VanB-type_vancomycin_resistance_response_regulator_transcription_factor_VanR
2665 Protein Modified: WP_063856729.1 vanR-O VanO-type_vancomycin_resistance_DNA-binding_response_regulator_VanR updated to WP_063856729.1 vanR-O VanO-type_vancomycin_resistance_response_regulator_transcription_factor_VanR
2666 Protein Modified: WP_063860636.1 blaKPC carbapenem-hydrolyzing_class_A_beta-lactamase_KPC-14 updated to WP_063860636.1 blaKPC inhibitor-resistant_class_A_extended-spectrum_beta-lactamase_KPC-14
2667 - AMR HMM library Changes:
2668 Total: Added 5
2669 Total: Prev. Release 610
2670 Total: Removed 12
2671 Total: This Release 603
2672 HMM Removed: NF000252.1 MexX
2673 HMM Removed: NF000282.2 RND_permease_1
2674 HMM Removed: NF000314.1 adeB
2675 HMM Removed: NF000315.1 adeC-adeK-oprM
2676 HMM Removed: NF007842.1 PRK10555.1
2677 HMM Removed: NF011706.2 PRK15127.1
2678 HMM Removed: NF028537.1 P_eth_NH2_trans
2679 HMM Removed: NF033086.2 penta_rpt_Qnr
2680 HMM Removed: NF033134.0 cmlA_floR
2681 HMM Removed: NF033143.1 efflux_OM_AdeK
2682 HMM Removed: NF033643.1 EspJ_gen
2683 HMM Removed: NF033651.1 cyto_nec_fctrs
2684 HMM Added: NF000478.2 linco_LnuE
2685 HMM Added: NF012180.1 tet_MFS_43
2686 HMM Added: NF033866.1 blaCDD
2687 HMM Added: NF033867.1 blaPAU
2688 HMM Added: NF033868.0 trim_DfrA36
2689 - Protein family changes:
2690 Total: Added 11
2691 Total: Prev. Release 1449
2692 Total: Removed 6
2693 Total: This Release 1454
2694 Family Removed: NF011706.2 acrB
2695 Family Removed: NF007842.1 acrD
2696 Family Removed: NF000314.1 adeB/adeJ
2697 Family Removed: NF033143.1 adeK
2698 Family Removed: - lamda
2699 Family Removed: - lamda-2
2700 Family Added: - aadA1bt
2701 Family Added: - arsB
2702 Family Added: - arsB_R773
2703 Family Added: NF033866.1 blaCDD
2704 Family Added: NF033867.1 blaPAU
2705 Family Added: NF033868.0 dfrA36
2706 Family Added: - emrD3
2707 Family Added: - lambda
2708 Family Added: - lambda-2
2709 Family Added: NF000478.2 lnu(E)
2710 Family Added: NF012180.1 tet(43)
2711 Family Changed: NF030466.1 MerP_Gneg updated to TIGR02052.1 MerP_Gneg
2712 Family Changed: NF030467.1 merA updated to TIGR02053.1 merA
2713
2714
2715 ---------------------------------------------------------------------
2716 Changes included in 2019-06-18.1
2717 ---------------------------------------------------------------------
2718
2719 This the first alpha release of the AMRFinderPlus database. For this and all
2720 following releases there is a distinction between "core" proteins which
2721 correspond to the genes that would previously have been reported by AMRFinder
2722 and "plus" proteins that are new genes and classes of genes. The "core"
2723 designation is given to proteins where we believe their presence is likely to
2724 have an important effect on antimicrobial resistance.
2725
2726 * Screen for select point mutations for antibiotic resistance from Salmonella,
2727 E. coli, and Campylobacter
2728 * Protein mutations in: 50S_L22 protein, acrB, acrR, basR, cmeR, cyaA,
2729 fabG, fabI, folP, gyrA, gyrB, lon, marR, murA, nfsA, ompF, parC, parE,
2730 pmrA, pmrB, ptsI, ramR, rpoB, rpsL, soxR, soxS, tufA, uhpA, uhpT
2731 * Nucleotide mutations in 16S and 23S rRNA
2732 * Included point mutations are listed in the reference gene database
2733 (https://www.ncbi.nlm.nih.gov/pathogens/isolates#/refgene/)
2734 * New "Plus" genes
2735 * virulence factors
2736 * biocide resistance
2737 * metal resistance
2738 * heat resistance
2739 * acid resistance
2740 * Combined and integrated results from nucleotide and protein searches
2741
2742 File formats have changed significantly. See https://github.com/evolarjun/amr/wiki
2743 for details.
2744
2745 Since release 2019-04-29.1 only one change has been made to the core AMR
2746 proteins. Qac's are now categorized under Type STRESS and Subtype BIOCIDE.
2747
2748 - Protein changes:
2749 Prev. Release: 4942
2750 This Release: 5718
2751 Added: 776
2752 Modified: 0
2753
2754 Protein Added: ABF69110.1 eae intimin type beta
2755 Protein Added: ABF69117.1 eae intimin type epsilon
2756 Protein Added: ABF69121.1 eae intimin type epsilon
2757 Protein Added: ABF69122.1 eae intimin type alpha
2758 Protein Added: KYU89760.1 subB subtilase AB5 cytotoxin subunit B
2759 Protein Added: AAG16664.1 perA BFP system transcriptional regulator PerA
2760 Protein Added: AAG16667.1 perA BFP system transcriptional regulator PerA
2761 Protein Added: AAG16676.1 perA BFP system transcriptional regulator PerA
2762 Protein Added: AAB09625.1 arsD arsenite efflux transporter metallochaperone ArsD
2763 Protein Added: AAB09626.1 arsA arsenite efflux transporter ATPase subunit ArsA
2764 Protein Added: CAJ76690.1 stx1Aa Shiga toxin Stx1a subunit A
2765 Protein Added: CAJ76692.1 stx1Aa Shiga toxin Stx1a subunit A
2766 Protein Added: AAA98291.1 terC tellurium resistance membrane protein TerC
2767 Protein Added: AAA98293.1 terE tellurium resistance cAMP binding protein TerE
2768 Protein Added: AAG27731.1 norM sodium-coupled multidrug efflux MATE transporter NorM
2769 Protein Added: ABF02983.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
2770 Protein Added: ABF04028.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
2771 Protein Added: BAE98279.1 bfpA bundle-forming pilus major subunit BfpA
2772 Protein Added: BAE98281.1 bfpA bundle-forming pilus major subunit BfpA
2773 Protein Added: CAC14596.1 smeF multidrug efflux RND transporter outer membrane subunit SmeF
2774 Protein Added: AAA83973.1 merR1 mercury resistance transcriptional regulator MerR1
2775 Protein Added: AAA83975.1 merT mercuric transport protein MerT
2776 Protein Added: AAA98292.1 terD tellurium resistance membrane protein TerD
2777 Protein Added: AAG34504.1 perA BFP system transcriptional regulator PerA
2778 Protein Added: APX31172.1 yfdX1 heat resistance protein YfdX1
2779 Protein Added: APX31174.1 hdeD-GI heat resistance membrane protein HdeD-GI
2780 Protein Added: APX31176.1 trxLHR heat resistance system thioredoxin Trx-GI
2781 Protein Added: APX31177.1 kefB-GI heat resistance system K+/H+ antiporter KefB-GI
2782 Protein Added: APX31178.1 psi-GI heat resistance protein PsiE-GI
2783 Protein Added: AAA85087.1 f17a F17A fimbrial adhesin
2784 Protein Added: AAA85196.1 cnf1 cytotoxic necrotizing factor CNF1
2785 Protein Added: AAG37043.1 espC serine protease autotransporter toxin EspC
2786 Protein Added: ABI93207.1 fedF F18 fimbrial adhesin subunit FedF
2787 Protein Added: BAF33872.1 capU putative hexosyltransferase CapU
2788 Protein Added: BAF33878.1 aggR aggregative adherence transcriptional regulator AggR
2789 Protein Added: BAF33885.1 sepA serine protease autotransporter toxin SepA
2790 Protein Added: BAF33888.1 agg4D aggregative adherence fimbria 4 chaperone Agg4D/HdaD
2791 Protein Added: BAF33891.1 agg4A aggregative adherence fimbria 4 major subunit Agg4A/HdaA
2792 Protein Added: BAF33901.1 aatA dispersin export ABC transporter outer membrane protein AatA
2793 Protein Added: BAF34018.1 aap dispersin Aap
2794 Protein Added: ABJ00546.1 iss increased serum survival lipoprotein Iss
2795 Protein Added: ABJ02430.1 ireA TonB-dependent siderophore receptor IreA
2796 Protein Added: OPH66324.1 lpfA1 long polar fimbria major subunit LpfA1
2797 Protein Added: ABJ90288.1 fedF F18 fimbrial adhesin subunit FedF
2798 Protein Added: AAA86846.1 terZ tellurium resistance-associated protein TerZ
2799 Protein Added: ABC67318.2 stx2Aa Shiga toxin Stx2a subunit A
2800 Protein Added: AAG40758.1 tir type III secretion system LEE translocated intimin receptor Tir
2801 Protein Added: AAA88371.1 merE broad-spectrum mercury transporter MerE
2802 Protein Added: AAG42788.1 perA BFP system transcriptional regulator PerA
2803 Protein Added: ASF80766.1 yfdX2 heat resistance protein YfdX2
2804 Protein Added: ASF80771.1 shsP small heat shock protein sHSP20-GI
2805 Protein Added: CAM11313.1 nleA type III secretion system effector NleA
2806 Protein Added: CAM11314.1 nleA type III secretion system effector NleA
2807 Protein Added: CAM11315.1 nleA type III secretion system effector NleA
2808 Protein Added: CAM11317.1 nleA type III secretion system effector NleA
2809 Protein Added: CAM11321.1 nleA type III secretion system effector NleA
2810 Protein Added: CAM11323.1 nleA type III secretion system effector NleA
2811 Protein Added: CAM11324.1 nleA type III secretion system effector NleA
2812 Protein Added: CAM11325.1 nleA type III secretion system effector NleA
2813 Protein Added: AAA92618.1 f17a F17A fimbrial adhesin
2814 Protein Added: AAA92621.1 f17g F17G fimbrial adhesin
2815 Protein Added: AAA93060.1 arsD arsenite efflux transporter metallochaperone ArsD
2816 Protein Added: AAG53662.1 perA BFP system transcriptional regulator PerA
2817 Protein Added: BAF45432.1 tccP Tir-cytoskeleton coupling protein TccP
2818 Protein Added: BAF45437.1 tccP Tir-cytoskeleton coupling protein TccP2
2819 Protein Added: BAF45439.1 tccP Tir-cytoskeleton coupling protein TccP2
2820 Protein Added: BAF45440.1 tccP Tir-cytoskeleton coupling protein TccP2
2821 Protein Added: BAF45447.1 tccP Tir-cytoskeleton coupling protein TccP2
2822 Protein Added: BAF45451.1 tccP Tir-cytoskeleton coupling protein TccP2
2823 Protein Added: BAF45459.1 tccP Tir-cytoskeleton coupling protein TccP2
2824 Protein Added: ABM90581.1 perA BFP system transcriptional regulator PerA
2825 Protein Added: ABM90583.1 perA BFP system transcriptional regulator PerA
2826 Protein Added: ABM90587.1 perA BFP system transcriptional regulator PerA
2827 Protein Added: ABM90589.1 perA BFP system transcriptional regulator PerA
2828 Protein Added: ABM90597.1 perA BFP system transcriptional regulator PerA
2829 Protein Added: ABM90605.1 perA BFP system transcriptional regulator PerA
2830 Protein Added: ABM90615.1 perA BFP system transcriptional regulator PerA
2831 Protein Added: AAC46147.1 yfeA iron/manganese ABC transporter substrate-binding protein YfeA
2832 Protein Added: AAC46148.1 yfeB iron/manganese ABC transporter ATP-binding protein YfeB
2833 Protein Added: AAC46150.1 yfeD iron/manganese ABC transporter permease subunit YfeD
2834 Protein Added: ATE69525.1 acr3 arsenite efflux transporter Acr3
2835 Protein Added: AAG55141.1 nleC type III secretion system effector zinc metalloprotease NleC
2836 Protein Added: AAG56990.1 espJ type III secretion system effector ADP-ribosyltransferase EspJ
2837 Protein Added: AAG58695.1 lpfA1 long polar fimbria major subunit LpfA1
2838 Protein Added: AAG58814.1 espF type III secretion system LEE effector EspF
2839 Protein Added: AAG58818.1 espB type III secretion system LEE translocon pore-forming subunit EspB
2840 Protein Added: AAG58825.1 tir type III secretion system LEE translocated intimin receptor Tir
2841 Protein Added: AAK15050.1 ttgR efflux transport transcriptional regulator TtgR
2842 Protein Added: AAK16940.1 nleA type III secretion system effector NleA
2843 Protein Added: AAK17180.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE
2844 Protein Added: AAK18385.1 sepA serine protease autotransporter toxin SepA
2845 Protein Added: AAK18444.1 ipaD type III secretion system needle tip complex protein IpaD
2846 Protein Added: BAB37280.1 nleB type III secretion system effector arginine glycosyltransferase NleB
2847 Protein Added: BAB38093.1 lpfA2 long polar fimbria major subunit LpfA2
2848 Protein Added: AAC44736.1 terW tellurium resistance protein TerW
2849 Protein Added: AVL28824.1 aar AggR-activated transcriptional regulator Aar
2850 Protein Added: SPD96882.1 silS copper/silver sensor histidine kinase SilS
2851 Protein Added: SPD96883.1 silR copper/silver response regulator transcription factor SilR
2852 Protein Added: SPD96884.1 silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC
2853 Protein Added: CAA57177.1 stx2Ae Shiga toxin Stx2e subunit A
2854 Protein Added: CAA57175.1 stx2Ae Shiga toxin Stx2e subunit A
2855 Protein Added: CAA57173.1 stx2Ae Shiga toxin Stx2e subunit A
2856 Protein Added: CAA57171.1 stx2Ae Shiga toxin Stx2e subunit A
2857 Protein Added: BAB43874.1 cadD cadmium resistance transporter CadD
2858 Protein Added: AAK48830.1 cadR cadmium resistance transcriptional regulator CadR
2859 Protein Added: BAF52034.1 tccP Tir-cytoskeleton coupling protein TccP2
2860 Protein Added: BAF52035.1 tccP Tir-cytoskeleton coupling protein TccP2
2861 Protein Added: BAF52033.1 tccP Tir-cytoskeleton coupling protein TccP2
2862 Protein Added: BAF52358.1 tccP Tir-cytoskeleton coupling protein TccP2
2863 Protein Added: BAF52360.1 tccP Tir-cytoskeleton coupling protein TccP2
2864 Protein Added: BAF52362.1 tccP Tir-cytoskeleton coupling protein TccP2
2865 Protein Added: BAF52363.1 tccP Tir-cytoskeleton coupling protein TccP2
2866 Protein Added: BAF52364.1 tccP Tir-cytoskeleton coupling protein TccP2
2867 Protein Added: BAF52365.1 tccP Tir-cytoskeleton coupling protein TccP2
2868 Protein Added: BAF52366.1 tccP Tir-cytoskeleton coupling protein TccP2
2869 Protein Added: BAF52367.1 tccP Tir-cytoskeleton coupling protein TccP2
2870 Protein Added: BAF52370.1 tccP Tir-cytoskeleton coupling protein TccP2
2871 Protein Added: BAF52374.1 tccP Tir-cytoskeleton coupling protein TccP2
2872 Protein Added: BAF52377.1 tccP Tir-cytoskeleton coupling protein TccP2
2873 Protein Added: BAF52548.1 tir type III secretion system LEE translocated intimin receptor Tir
2874 Protein Added: BAF52549.1 tir type III secretion system LEE translocated intimin receptor Tir
2875 Protein Added: BAB47641.1 merB organomercurial lyase MerB
2876 Protein Added: AAK56853.1 chrR class I chromate reductase ChrR
2877 Protein Added: CAC39286.1 espI serine protease autotransporter EspI
2878 Protein Added: AAA83977.1 merA mercury(II) reductase
2879 Protein Added: AAA23405.1 fasA F6 fimbrial major subunit FasA
2880 Protein Added: AAA23421.1 fim41a fimbrial adhesin F41 protein Fim41a
2881 Protein Added: AAK66972.1 stx2Ad Shiga toxin Stx2d subunit A
2882 Protein Added: AAC41416.1 cfaC CFA/I pilus usher protein CfaC
2883 Protein Added: CAB54534.2 mchB microcin H47
2884 Protein Added: AAK69562.1 srpS solvent efflux transporter transcriptional repressor SrpS
2885 Protein Added: AAA23734.1 fedA F18 fimbrial major subunit FedA
2886 Protein Added: ABQ02454.1 eae intimin type rho
2887 Protein Added: AAA24032.1 faeG F4 fimbrial adhesin subunit FaeG
2888 Protein Added: AAA24035.1 faeG F4 fimbrial adhesin subunit FaeG
2889 Protein Added: AAA24390.1 faeG F4 fimbrial adhesin subunit FaeG
2890 Protein Added: AXV27948.1 agg3C aggregative adherence fimbria 3 usher protein Agg3C
2891 Protein Added: AAA19189.1 stx2Ae Shiga toxin Stx2e subunit A
2892 Protein Added: AAA19190.1 stx2Be Shiga toxin Stx2e subunit B
2893 Protein Added: AAA24632.1 stx2Af Shiga toxin Stx2f subunit A
2894 Protein Added: AAA24633.1 stx2Bf Shiga toxin Stx2f subunit B
2895 Protein Added: AAA71893.1 stx1Aa Shiga toxin Stx1a subunit A
2896 Protein Added: AAA71894.1 stx1Ba Shiga toxin Stx1a subunit B
2897 Protein Added: AAA24653.1 sta1 heat-stable enterotoxin ST-I group a
2898 Protein Added: ABR09925.1 stx2Ba Shiga toxin Stx2a subunit B
2899 Protein Added: ABR09934.1 stx2Ac Shiga toxin Stx2c subunit A
2900 Protein Added: ABR09935.1 stx2Bc Shiga toxin Stx2c subunit B
2901 Protein Added: ABR09936.1 stx2Ad Shiga toxin Stx2d subunit A
2902 Protein Added: ABR09937.1 stx2Bd Shiga toxin Stx2d subunit B
2903 Protein Added: ABR09945.1 stx2Ba Shiga toxin Stx2a subunit B
2904 Protein Added: ABR09961.1 stx2Ba Shiga toxin Stx2a subunit B
2905 Protein Added: ABR09963.1 stx2Ba Shiga toxin Stx2a subunit B
2906 Protein Added: ABR10024.1 stx2Ab Shiga toxin Stx2b subunit A
2907 Protein Added: CAA30714.1 stx2Ac Shiga toxin Stx2c subunit A
2908 Protein Added: CAA30715.1 stx2Ba Shiga toxin Stx2a subunit B
2909 Protein Added: AAB59075.1 merT mercuric transport protein MerT
2910 Protein Added: AAA88369.1 merB organomercurial lyase MerB
2911 Protein Added: AAA88370.1 merD mercury resistance co-regulator MerD
2912 Protein Added: AAA98222.1 merT mercuric transport protein MerT
2913 Protein Added: AAA98223.1 merP mercury resistance system periplasmic binding protein MerP
2914 Protein Added: AAA25638.1 arsC thioredoxin-dependent arsenate reductase
2915 Protein Added: AAA88432.1 chrA chromate resistance efflux protein ChrA
2916 Protein Added: AAA25803.1 copR heavy metal response regulator transcription factor CopR
2917 Protein Added: AAA25804.1 copS copper resistance membrane spanning protein CopS
2918 Protein Added: AAA25806.1 copA laccase-like oxidase CopA
2919 Protein Added: AAA25807.1 copB copper-binding protein CopB
2920 Protein Added: CAC48396.1 stx2Ab Shiga toxin Stx2b subunit A
2921 Protein Added: CAC48398.1 stx2Ae Shiga toxin Stx2e subunit A
2922 Protein Added: AAA21094.1 arsA arsenite efflux transporter ATPase subunit ArsA
2923 Protein Added: BAB62897.1 cofA type IV pilus CFA/III major pilin
2924 Protein Added: BAB62907.1 cofA type IV pilus CFA/III major pilin
2925 Protein Added: CAA63849.1 ehxA enterohemolysin
2926 Protein Added: AAA26402.1 klaB tellurium resistance system protein klaB
2927 Protein Added: AAA26403.1 klaC tellurium resistance system protein klaC
2928 Protein Added: AAK97136.1 cfaC CFA/I pilus usher protein CfaC
2929 Protein Added: AAK99679.1 pmrA multidrug efflux MFS transporter PmrA
2930 Protein Added: CAC69248.1 merR mercury resistance transcriptional regulator MerR
2931 Protein Added: CAC69249.1 merT mercuric transport protein MerT
2932 Protein Added: CAC69250.1 merP mercury resistance system periplasmic binding protein MerP
2933 Protein Added: CAC69251.1 merA mercury(II) reductase
2934 Protein Added: BAB64566.1 bexA multidrug efflux MATE transporter BexA
2935 Protein Added: AAA27589.1 arsC thioredoxin-dependent arsenate reductase
2936 Protein Added: ABU55302.1 stx2Ac Shiga toxin Stx2c subunit A
2937 Protein Added: BAF76383.1 ttgA toluene efflux RND transporter periplasmic adaptor subunit TtgA
2938 Protein Added: BAF76384.1 ttgB multidrug efflux RND transporter permease subunit TtgB
2939 Protein Added: ABV01314.1 ltcA heat-labile enterotoxin LT subunit A
2940 Protein Added: BAF79679.1 smdA multidrug efflux ABC transporter permease/ATP-binding subunit SmdA
2941 Protein Added: BAF79680.1 smdB multidrug efflux ABC transporter permease/ATP-binding subunit SmdB
2942 Protein Added: ABV16438.1 eatA serine protease autotransporter toxin EatA
2943 Protein Added: BAB68369.1 stx2Ac Shiga toxin Stx2c subunit A
2944 Protein Added: BAB68370.1 stx2Bc Shiga toxin Stx2c subunit B
2945 Protein Added: BAF80121.1 ssmE multidrug efflux SMR transporter SsmE
2946 Protein Added: AAL06376.1 tir type III secretion system LEE translocated intimin receptor Tir
2947 Protein Added: AAL06381.1 espA type III secretion system LEE translocon filament protein EspA
2948 Protein Added: AAL06387.1 espF type III secretion system LEE effector EspF
2949 Protein Added: AAC23256.1 hmrM sodium-coupled multidrug efflux MATE transporter HmrM
2950 Protein Added: ABQ02442.1 ehxA enterohemolysin
2951 Protein Added: ABQ02443.1 ehxA enterohemolysin
2952 Protein Added: ABQ02445.1 ehxA enterohemolysin
2953 Protein Added: ABQ02447.1 ehxA enterohemolysin
2954 Protein Added: ABQ02448.1 ehxA enterohemolysin
2955 Protein Added: AAL08400.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
2956 Protein Added: BAF92845.1 tir type III secretion system LEE translocated intimin receptor Tir
2957 Protein Added: AAL14441.1 adeC multidrug efflux RND transporter AdeABC outer membrane channel subunit AdeC
2958 Protein Added: CAP17609.1 stx2Ae Shiga toxin Stx2e subunit A
2959 Protein Added: CAP17610.1 stx2Be Shiga toxin Stx2e subunit B
2960 Protein Added: AAL18821.1 epeA serine protease autotransporter EpeA
2961 Protein Added: AAL19305.1 mdsB multidrug efflux RND transporter permease subunit MdsB
2962 Protein Added: AAL19306.1 mdsA multidrug efflux RND transporter periplasmic adaptor subunit MdsA
2963 Protein Added: AAL19307.1 golT gold/copper-translocating P-type ATPase GolT
2964 Protein Added: AAL19308.1 golS Au(I) sensor transcriptional regulator GolS
2965 Protein Added: BAF96525.1 espJ type III secretion system effector ADP-ribosyltransferase EspJ
2966 Protein Added: BAF96538.1 nleB2 type III secretion system effector arginine glycosyltransferase NleB2
2967 Protein Added: BAF96541.1 nleA type III secretion system effector NleA
2968 Protein Added: BAA18405.1 acr3 arsenite efflux transporter Acr3
2969 Protein Added: BAA18407.1 arsC thioredoxin-dependent arsenate reductase
2970 Protein Added: AAL26283.1 saa autoagglutinating adhesin Saa
2971 Protein Added: CAA65654.1 espB type III secretion system LEE translocon pore-forming subunit EspB
2972 Protein Added: AAC45964.1 stx2Ae Shiga toxin Stx2e subunit A
2973 Protein Added: AAC45965.1 stx2Be Shiga toxin Stx2e subunit B
2974 Protein Added: ACA34793.1 tsh temperature-sensitive protease autotransporter hemagglutinin Tsh
2975 Protein Added: BAG11995.1 tccP Tir-cytoskeleton coupling protein TccP
2976 Protein Added: BAG11997.1 tccP Tir-cytoskeleton coupling protein TccP
2977 Protein Added: BAG12001.1 tccP Tir-cytoskeleton coupling protein TccP2
2978 Protein Added: ACB16424.1 lpfA long polar fimbria major subunit LpfA-O113
2979 Protein Added: ACB16655.1 eilA HilA family transcriptional regulator EilA
2980 Protein Added: ACB17037.1 air inverse autotransporter adhesin EaeX/Air
2981 Protein Added: CAA70196.1 merT mercuric transport protein MerT
2982 Protein Added: ACB72721.1 faeG F4 fimbrial adhesin subunit FaeG
2983 Protein Added: AAC44731.1 espC serine protease autotransporter toxin EspC
2984 Protein Added: AAC74250.1 ymgB biofilm/acid-resistance regulator AriR
2985 Protein Added: AAC76298.1 acrF multidrug efflux RND transporter permease subunit AcrF
2986 Protein Added: AAC77293.1 mdtM multidrug efflux MFS transporter MdtM
2987 Protein Added: AAL57565.1 nleB type III secretion system effector arginine glycosyltransferase NleB
2988 Protein Added: BAB82994.1 stx2Ab Shiga toxin Stx2b subunit A
2989 Protein Added: BAB82996.1 stx2Ab Shiga toxin Stx2b subunit A
2990 Protein Added: BAB82998.1 stx2Ab Shiga toxin Stx2b subunit A
2991 Protein Added: BAB83000.1 stx2Ab Shiga toxin Stx2b subunit A
2992 Protein Added: BAB83002.1 stx2Ag Shiga toxin Stx2g subunit A
2993 Protein Added: BAB83003.1 stx2Bg Shiga toxin Stx2g subunit B
2994 Protein Added: BAB83005.1 stx2Bb Shiga toxin Stx2b subunit B
2995 Protein Added: BAB83007.1 stx2Bb Shiga toxin Stx2b subunit B
2996 Protein Added: BAB83020.1 stx2Ag Shiga toxin Stx2g subunit A
2997 Protein Added: BAB83022.1 stx1Ac Shiga toxin Stx1c subunit A
2998 Protein Added: BAB83023.1 stx1Bc Shiga toxin Stx1c subunit B
2999 Protein Added: BAB83024.1 stx2Ab Shiga toxin Stx2b subunit A
3000 Protein Added: AAL72309.1 sepA serine protease autotransporter toxin SepA
3001 Protein Added: AAL72350.1 ipaD type III secretion system needle tip complex protein IpaD
3002 Protein Added: AAL05407.1 tcrB copper-translocating P-type ATPase TcrB
3003 Protein Added: ACD06066.1 capU putative hexosyltransferase CapU
3004 Protein Added: ACD06132.1 ipaD type III secretion system needle tip complex protein IpaD
3005 Protein Added: ACD07996.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3
3006 Protein Added: ACD09076.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
3007 Protein Added: BAA11821.1 chrR class I chromate reductase ChrR
3008 Protein Added: CAQ45062.1 emrC multidrug efflux transporter outer membrane subunit EmrC
3009 Protein Added: CAQ45063.1 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA
3010 Protein Added: CAQ45064.1 emrB multidrug efflux MFS transporter permease subunit EmrB
3011 Protein Added: ACF05260.1 agg4A aggregative adherence fimbria 4 major subunit Agg4A/HdaA
3012 Protein Added: ACF30254.1 mtrR multidrug efflux system transcriptional repressor MtrR
3013 Protein Added: ACF30256.1 mtrF AbgT family antimetabolite efflux transporter MtrF
3014 Protein Added: BAG66379.1 tccP Tir-cytoskeleton coupling protein TccP2
3015 Protein Added: BAG66729.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3016 Protein Added: BAG66736.1 tir type III secretion system LEE translocated intimin receptor Tir
3017 Protein Added: ACG59623.1 tir type III secretion system LEE translocated intimin receptor Tir
3018 Protein Added: ACG59674.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3019 Protein Added: ACG59676.1 espA type III secretion system LEE translocon filament protein EspA
3020 Protein Added: ACG59681.1 tir type III secretion system LEE translocated intimin receptor Tir
3021 Protein Added: ACG59730.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3022 Protein Added: ACG59732.1 espA type III secretion system LEE translocon filament protein EspA
3023 Protein Added: ACG59737.1 tir type III secretion system LEE translocated intimin receptor Tir
3024 Protein Added: ACG76368.1 arsP organoarsenical efflux permease ArsP
3025 Protein Added: ACI12150.1 terB tellurium resistance membrane protein TerB
3026 Protein Added: BAG76115.1 iss increased serum survival lipoprotein Iss
3027 Protein Added: AAA98099.1 stx1Aa Shiga toxin Stx1a subunit A
3028 Protein Added: CAS08589.1 nleB2 type III secretion system effector arginine glycosyltransferase NleB2
3029 Protein Added: CAS08990.1 nleA type III secretion system effector NleA
3030 Protein Added: CAS10463.1 espC serine protease autotransporter toxin EspC
3031 Protein Added: CAS06720.1 eae intimin type gamma
3032 Protein Added: CAS06721.1 eae intimin type alpha
3033 Protein Added: CAS06723.1 eae intimin type alpha
3034 Protein Added: BAA20334.1 merR mercury resistance transcriptional regulator MerR
3035 Protein Added: BAA20336.1 merP mercury resistance system periplasmic binding protein MerP
3036 Protein Added: BAA20337.1 merA mercury(II) reductase
3037 Protein Added: AAM70045.1 stx2Aa Shiga toxin Stx2a subunit A
3038 Protein Added: CAQ87187.1 iroN siderophore salmochelin receptor IroN
3039 Protein Added: CAV00478.1 lpfA long polar fimbria major subunit LpfA
3040 Protein Added: CAV00812.1 lpfA long polar fimbria major subunit LpfA-O113
3041 Protein Added: CAV02025.1 capU putative hexosyltransferase CapU
3042 Protein Added: CAQ90194.1 iss increased serum survival lipoprotein Iss
3043 Protein Added: CAU95796.1 aatA dispersin export ABC transporter outer membrane protein AatA
3044 Protein Added: CAU95824.1 agg3D aggregative adherence fimbria 3 chaperone Agg3D
3045 Protein Added: CAQ97644.1 iss increased serum survival lipoprotein Iss
3046 Protein Added: CAR01635.1 vactox vacuolating autotransporter toxin Vat
3047 Protein Added: CAR09703.2 ireA TonB-dependent siderophore receptor IreA
3048 Protein Added: CAR12622.1 iss increased serum survival lipoprotein Iss
3049 Protein Added: CAR15326.1 air inverse autotransporter adhesin EaeX/Air
3050 Protein Added: CAW30811.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE
3051 Protein Added: CAW30815.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE
3052 Protein Added: ACL13561.1 copR heavy metal response regulator transcription factor CopR
3053 Protein Added: ACL13562.1 copS copper resistance membrane spanning protein CopS
3054 Protein Added: ACL51961.1 ehxA enterohemolysin
3055 Protein Added: ACL51990.1 toxB toxin B
3056 Protein Added: AAM88296.1 agg3C aggregative adherence fimbria 3 usher protein Agg3C
3057 Protein Added: AAM88297.1 agg3B aggregative adherence fimbria 3 minor subunit Agg3B
3058 Protein Added: AAM88298.1 agg3A aggregative adherence fimbria 3 major subunit Agg3A
3059 Protein Added: AAM88299.1 astA heat-stable enterotoxin EAST1
3060 Protein Added: AAM88302.1 stx2Ad Shiga toxin Stx2d subunit A
3061 Protein Added: BAA14138.2 merC organomercurial transporter MerC
3062 Protein Added: AAM88668.1 cueA copper resistance metal-translocating P1-type ATPase CueA
3063 Protein Added: AAM90978.1 stx2Ba Shiga toxin Stx2a subunit B
3064 Protein Added: CAX18553.1 nleB type III secretion system effector arginine glycosyltransferase NleB
3065 Protein Added: CAX18626.1 nleB type III secretion system effector arginine glycosyltransferase NleB
3066 Protein Added: CAX18635.1 espF type III secretion system LEE effector EspF
3067 Protein Added: CAX18641.1 espA type III secretion system LEE translocon filament protein EspA
3068 Protein Added: CAX18646.1 tir type III secretion system LEE translocated intimin receptor Tir
3069 Protein Added: CAX18721.1 espA type III secretion system LEE translocon filament protein EspA
3070 Protein Added: CAX18726.1 tir type III secretion system LEE translocated intimin receptor Tir
3071 Protein Added: ACM67143.1 eae intimin type alpha
3072 Protein Added: ACM67145.1 eae intimin type iota
3073 Protein Added: ACM67146.1 eae intimin type alpha
3074 Protein Added: ACM67148.1 eae intimin type gamma
3075 Protein Added: ACM67149.1 eae intimin type gamma
3076 Protein Added: ACM67152.1 eae intimin type beta
3077 Protein Added: ACM67153.1 eae intimin type lambda
3078 Protein Added: ACM67154.1 eae intimin type gamma
3079 Protein Added: ACM67155.1 eae intimin type epsilon
3080 Protein Added: ACM67156.1 eae intimin type epsilon
3081 Protein Added: ACM67157.1 eae intimin type beta
3082 Protein Added: ACM67158.1 eae intimin type epsilon
3083 Protein Added: ACM67160.1 eae intimin type beta
3084 Protein Added: ACM67161.1 eae intimin type beta
3085 Protein Added: ACM67162.1 eae intimin type gamma
3086 Protein Added: ACM67163.1 eae intimin type rho
3087 Protein Added: ACM67164.1 eae intimin type gamma
3088 Protein Added: ACM67165.1 eae intimin type gamma
3089 Protein Added: ACM67166.1 eae intimin type gamma
3090 Protein Added: ACM67167.1 eae intimin type epsilon
3091 Protein Added: ACM67168.1 eae intimin type alpha
3092 Protein Added: ACM67169.1 eae intimin type gamma
3093 Protein Added: ACM67172.1 eae intimin type epsilon
3094 Protein Added: ACM67177.1 eae intimin type gamma
3095 Protein Added: ACM67178.1 eae intimin type epsilon
3096 Protein Added: BAH24012.1 toxB toxin B
3097 Protein Added: CAB14520.2 acr3 arsenite efflux transporter Acr3
3098 Protein Added: ACO06752.1 emhB efflux RND transporter permease subunit EmhB
3099 Protein Added: AAN03785.1 cnf1 cytotoxic necrotizing factor CNF1
3100 Protein Added: AAN03786.1 cnf1 cytotoxic necrotizing factor CNF1
3101 Protein Added: AAN04250.1 dpsA non-specific DNA-binding protein DpsA
3102 Protein Added: BAC10987.1 stx1Ac Shiga toxin Stx1c subunit A
3103 Protein Added: BAC10988.1 stx1Bc Shiga toxin Stx1c subunit B
3104 Protein Added: BAC10992.1 stx1Bc Shiga toxin Stx1c subunit B
3105 Protein Added: CAY54182.1 bfpA bundle-forming pilus major subunit BfpA
3106 Protein Added: AAN29240.1 bepD multidrug efflux RND transporter periplasmic adaptor subunit BepD
3107 Protein Added: AAN29241.1 bepE multidrug efflux RND transporter permease subunit BepE
3108 Protein Added: AAN29871.1 bepC multidrug efflux RND transporter outer membrane subunit BepC
3109 Protein Added: AAN33534.1 bepG multidrug efflux RND transporter permease subunit BepG
3110 Protein Added: AAN33535.1 bepF multidrug efflux RND transporter periplasmic adaptor subunit BepF
3111 Protein Added: CAD48850.1 cdtB cytolethal distending toxin type III/V nuclease subunit CdtB
3112 Protein Added: CAC86907.1 merB organomercurial lyase MerB
3113 Protein Added: BAH65949.1 iroN siderophore salmochelin receptor IroN
3114 Protein Added: BAH72965.1 cdtB cytolethal distending toxin type II nuclease subunit CdtB
3115 Protein Added: AAN42986.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3
3116 Protein Added: AAN43435.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
3117 Protein Added: AAN44449.1 sigA serine protease autotransporter toxin SigA
3118 Protein Added: CAQ68302.1 stx2Ac Shiga toxin Stx2c subunit A
3119 Protein Added: ACS88189.1 ipaD type III secretion system needle tip complex protein IpaD
3120 Protein Added: AAC45719.1 f17a F17A fimbrial adhesin
3121 Protein Added: AAC45722.1 f17g F17G fimbrial adhesin
3122 Protein Added: AAN68576.1 mrdH Ni(II)/Co(II) efflux transporter permease subunit MrdH
3123 Protein Added: AAN68577.1 mreA metal-sensing transcriptional repressor MreA
3124 Protein Added: ACT33468.1 f17a F17A fimbrial adhesin
3125 Protein Added: ACT33471.1 f17g F17G fimbrial adhesin
3126 Protein Added: ACT72391.1 tccP Tir-cytoskeleton coupling protein TccP
3127 Protein Added: CAR47993.1 espA type III secretion system LEE translocon filament protein EspA
3128 Protein Added: CAR48009.1 nleB type III secretion system effector arginine glycosyltransferase NleB
3129 Protein Added: BAH86759.1 stx2Af Shiga toxin Stx2f subunit A
3130 Protein Added: BAH86760.1 stx2Bf Shiga toxin Stx2f subunit B
3131 Protein Added: BAA20338.2 merB organomercurial lyase MerB
3132 Protein Added: ACU32684.1 stx2Aa Shiga toxin Stx2a subunit A
3133 Protein Added: ACU65296.1 merA mercury(II) reductase
3134 Protein Added: CAX45702.1 stx2Ae Shiga toxin Stx2e subunit A
3135 Protein Added: CAX45706.1 stx2Ad Shiga toxin Stx2d subunit A
3136 Protein Added: CAX45714.1 stx2Ae Shiga toxin Stx2e subunit A
3137 Protein Added: CAX45718.1 stx2Ae Shiga toxin Stx2e subunit A
3138 Protein Added: CAX45737.1 stx2Bd Shiga toxin Stx2d subunit B
3139 Protein Added: CAX45739.1 stx2Ba Shiga toxin Stx2a subunit B
3140 Protein Added: CAX45746.1 stx2Ac Shiga toxin Stx2c subunit A
3141 Protein Added: CAX51714.1 stx2Ae Shiga toxin Stx2e subunit A
3142 Protein Added: AAB82330.1 aafA aggregative adherence fimbria II major subunit AafA
3143 Protein Added: BAI25473.1 nleC type III secretion system effector zinc metalloprotease NleC
3144 Protein Added: BAI31154.1 tccP Tir-cytoskeleton coupling protein TccP2
3145 Protein Added: BAI32292.1 nleB type III secretion system effector arginine glycosyltransferase NleB
3146 Protein Added: BAI32327.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3147 Protein Added: BAI32516.1 espI serine protease autotransporter EspI
3148 Protein Added: BAI33940.1 etpD variant type II secretion system secretin EtpD
3149 Protein Added: BAI36256.1 nleC type III secretion system effector zinc metalloprotease NleC
3150 Protein Added: BAI36790.1 nleA type III secretion system effector NleA
3151 Protein Added: BAI37513.1 nleB type III secretion system effector arginine glycosyltransferase NleB
3152 Protein Added: BAI37519.1 espF type III secretion system LEE effector EspF
3153 Protein Added: BAI37525.1 espA type III secretion system LEE translocon filament protein EspA
3154 Protein Added: BAA23166.1 merG phenylmercury resistance protein MerG
3155 Protein Added: AAN76093.1 iroN siderophore salmochelin receptor IroN
3156 Protein Added: AAN77057.1 stx2Ad Shiga toxin Stx2d subunit A
3157 Protein Added: AAN77061.1 stx2Ad Shiga toxin Stx2d subunit A
3158 Protein Added: AAN77063.1 stx2Ad Shiga toxin Stx2d subunit A
3159 Protein Added: BAI44131.1 agg5A aggregative adherence fimbria V major subunit Agg5A
3160 Protein Added: AAD12176.1 srpB solvent efflux RND transporter permease subunit SrpB
3161 Protein Added: AAD12177.1 ttgI solvent efflux RND transporter outer membrane subunit SrpC
3162 Protein Added: AAD12178.1 srpA solvent efflux RND transporter periplasmic adaptor subunit SrpA
3163 Protein Added: AAN78874.1 vactox vacuolating autotransporter toxin Vat
3164 Protein Added: AAN79707.1 iroN siderophore salmochelin receptor IroN
3165 Protein Added: AAN80033.1 iss increased serum survival lipoprotein Iss
3166 Protein Added: AAN83596.1 ireA TonB-dependent siderophore receptor IreA
3167 Protein Added: CAB14519.1 arsC thioredoxin-dependent arsenate reductase
3168 Protein Added: AAB91079.1 copB copper-binding protein CopB
3169 Protein Added: CAA05105.1 copP copper-binding metallochaperone CopP
3170 Protein Added: AAB88410.1 tir type III secretion system LEE translocated intimin receptor Tir
3171 Protein Added: EEZ94110.1 sdeA multidrug efflux RND transporter periplasmic adaptor subunit SdeA
3172 Protein Added: AAO17297.1 eatA serine protease autotransporter toxin EatA
3173 Protein Added: ADA73787.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3
3174 Protein Added: ADA76801.1 sepA serine protease autotransporter toxin SepA
3175 Protein Added: AAO19475.1 stx1Ad Shiga toxin Stx1d subunit A
3176 Protein Added: AAO19476.1 stx1Bd Shiga toxin Stx1d subunit B
3177 Protein Added: ADA79992.1 merT mercuric transport protein MerT
3178 Protein Added: CBG87859.1 nleB type III secretion system effector arginine glycosyltransferase NleB
3179 Protein Added: CBG89712.1 espA type III secretion system LEE translocon filament protein EspA
3180 Protein Added: CAD66214.1 vactox vacuolating autotransporter toxin Vat
3181 Protein Added: ADB20445.1 toxB toxin B
3182 Protein Added: CBG36837.1 eilA HilA family transcriptional regulator EilA
3183 Protein Added: CBG36838.1 air inverse autotransporter adhesin EaeX/Air
3184 Protein Added: CBG37385.1 aaiC type VI secretion system protein AaiC/Hcp2
3185 Protein Added: CBG27762.1 aatA dispersin export ABC transporter outer membrane protein AatA
3186 Protein Added: CBG27784.1 aafB aggregative adherence fimbria II minor subunit AafB
3187 Protein Added: CBG27798.1 aafD aggregative adherence fimbria II chaperone AafD
3188 Protein Added: CBG27800.1 aafA aggregative adherence fimbria II major subunit AafA
3189 Protein Added: CBG27804.1 aggR aggregative adherence transcriptional regulator AggR
3190 Protein Added: CBG27807.1 aap dispersin Aap
3191 Protein Added: CBG27812.1 aar AggR-activated transcriptional regulator Aar
3192 Protein Added: AAD12174.1 stx2Ab Shiga toxin Stx2b subunit A
3193 Protein Added: AAO49780.1 ttgD toluene efflux RND transporter periplasmic adaptor subunit TtgD
3194 Protein Added: AAC38390.1 tir type III secretion system LEE translocated intimin receptor Tir
3195 Protein Added: AAC38394.1 espA type III secretion system LEE translocon filament protein EspA
3196 Protein Added: AAC38400.1 espF type III secretion system LEE effector EspF
3197 Protein Added: BAA24822.1 arsA arsenite efflux transporter ATPase subunit ArsA
3198 Protein Added: AAA20885.1 astA heat-stable enterotoxin EAST1
3199 Protein Added: AAA23736.1 f17g F17G fimbrial adhesin
3200 Protein Added: AAA23737.1 f17a F17A fimbrial adhesin
3201 Protein Added: ADD58872.1 espF type III secretion system LEE effector EspF
3202 Protein Added: ADD58881.1 eae intimin type gamma
3203 Protein Added: ADD58883.1 tir type III secretion system LEE translocated intimin receptor Tir
3204 Protein Added: EFF39147.1 norM sodium-coupled multidrug efflux MATE transporter NorM
3205 Protein Added: AAO66617.1 espA type III secretion system LEE translocon filament protein EspA
3206 Protein Added: BAJ04486.1 perA BFP system transcriptional regulator PerA
3207 Protein Added: BAJ04488.1 perA BFP system transcriptional regulator PerA
3208 Protein Added: AAC38219.1 merP mercury resistance system periplasmic binding protein MerP
3209 Protein Added: AAC38220.1 merA mercury(II) reductase
3210 Protein Added: AAC38221.1 merD mercury resistance co-regulator MerD
3211 Protein Added: ADE90928.1 vactox vacuolating autotransporter toxin Vat
3212 Protein Added: AAC38229.1 merR mercury resistance transcriptional regulator MerR
3213 Protein Added: AAC38230.1 merB organomercurial lyase MerB
3214 Protein Added: AAC38231.1 merT mercuric transport protein MerT
3215 Protein Added: AAC38232.1 merP mercury resistance system periplasmic binding protein MerP
3216 Protein Added: AAC38233.1 merC organomercurial transporter MerC
3217 Protein Added: AAC38236.1 merE broad-spectrum mercury transporter MerE
3218 Protein Added: ADF64798.1 ncrC Ni(II)/Co(II) efflux transporter permease subunit NcrC
3219 Protein Added: CBK85583.1 iroN siderophore salmochelin receptor IroN
3220 Protein Added: CBL93318.1 capU putative hexosyltransferase CapU
3221 Protein Added: CBL93506.1 lngA type IV pilus longus major pilin
3222 Protein Added: ADI59685.1 astA heat-stable enterotoxin EAST1
3223 Protein Added: ADI95409.1 ttgE multidrug efflux RND transporter permease subunit TtgE
3224 Protein Added: ADI95411.1 ttgT efflux transport transcriptional regulator TtgT
3225 Protein Added: AAP03990.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3226 Protein Added: AAP18950.1 lpfA long polar fimbria major subunit LpfA-O113
3227 Protein Added: ADK23698.1 qacR multidrug-binding transcriptional regulator QacR
3228 Protein Added: ADK73987.1 tir type III secretion system LEE translocated intimin receptor Tir
3229 Protein Added: AAM22256.1 stx2Ad Shiga toxin Stx2d subunit A
3230 Protein Added: AAM22257.1 stx2Bd Shiga toxin Stx2d subunit B
3231 Protein Added: CAD56174.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3232 Protein Added: CAD56186.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3233 Protein Added: AAA16360.1 stx2Ab Shiga toxin Stx2b subunit A
3234 Protein Added: AAA16361.1 stx2Bb Shiga toxin Stx2b subunit B
3235 Protein Added: AAA16362.1 stx2Ac Shiga toxin Stx2c subunit A
3236 Protein Added: ADM83435.1 nleA type III secretion system effector NleA
3237 Protein Added: ADN71659.1 iss increased serum survival lipoprotein Iss
3238 Protein Added: AAP37403.1 stx2Ag Shiga toxin Stx2g subunit A
3239 Protein Added: AAC26634.1 pet serine protease autotransporter toxin Pet
3240 Protein Added: CBJ04488.1 cfaC CFA/I pilus usher protein CfaC
3241 Protein Added: AAC15683.1 tir type III secretion system LEE translocated intimin receptor Tir
3242 Protein Added: ADO96486.1 hmrM sodium-coupled multidrug efflux MATE transporter HmrM
3243 Protein Added: ADP02162.1 merA mercury(II) reductase
3244 Protein Added: CAA73506.1 espA type III secretion system LEE translocon filament protein EspA
3245 Protein Added: ADR26561.1 iss increased serum survival lipoprotein Iss
3246 Protein Added: ADR70747.1 copA laccase-like oxidase CopA
3247 Protein Added: ADR70748.1 copB copper-binding protein CopB
3248 Protein Added: BAC77251.1 sdeY multidrug efflux RND transporter permease subunit SdeY
3249 Protein Added: ADW66881.1 arsH arsenic resistance NADPH-dependent reductase ArsH
3250 Protein Added: AAP78989.1 ipaD type III secretion system needle tip complex protein IpaD
3251 Protein Added: BAC78639.1 stx1Aa Shiga toxin Stx1a subunit A
3252 Protein Added: BAC78640.1 stx1Ba Shiga toxin Stx1a subunit B
3253 Protein Added: AAC69314.1 tir type III secretion system LEE translocated intimin receptor Tir
3254 Protein Added: AAC69318.1 tir type III secretion system LEE translocated intimin receptor Tir
3255 Protein Added: BAJ79293.1 aafA aggregative adherence fimbria II major subunit AafA
3256 Protein Added: BAJ79295.1 aafA aggregative adherence fimbria II major subunit AafA
3257 Protein Added: BAJ79296.1 aafA aggregative adherence fimbria II major subunit AafA
3258 Protein Added: BAJ79297.1 aafA aggregative adherence fimbria II major subunit AafA
3259 Protein Added: BAJ79299.1 agg5A aggregative adherence fimbria V major subunit Agg5A
3260 Protein Added: BAJ79300.1 agg5A aggregative adherence fimbria V major subunit Agg5A
3261 Protein Added: ADY84088.1 nreB nickel resistance MFS transporter NreB
3262 Protein Added: AAC24352.1 ehxA enterohemolysin
3263 Protein Added: ADZ45128.1 ehxA enterohemolysin
3264 Protein Added: AAP88295.1 copA laccase-like oxidase CopA
3265 Protein Added: AEC46567.1 copA laccase-like oxidase CopA
3266 Protein Added: AEC46568.1 copB copper-binding protein CopB
3267 Protein Added: AAC38671.1 ttgB multidrug efflux RND transporter permease subunit TtgB
3268 Protein Added: BAA31774.1 ehxA enterohemolysin
3269 Protein Added: BAA31815.1 toxB toxin B
3270 Protein Added: BAA31832.1 katP catalase/peroxidase KatP
3271 Protein Added: BAA31836.1 espP serine protease autotransporter EspP
3272 Protein Added: AAQ17236.1 mco multi-copper oxidase Mco
3273 Protein Added: AAQ17546.1 stx2Ae Shiga toxin Stx2e subunit A
3274 Protein Added: CAA74174.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3275 Protein Added: AEG95593.1 iroN siderophore salmochelin receptor IroN
3276 Protein Added: AAQ20107.1 cfaC CFA/I pilus usher protein CfaC
3277 Protein Added: AEK01061.1 iroN siderophore salmochelin receptor IroN
3278 Protein Added: AAC31499.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3279 Protein Added: AAY90617.2 emhA efflux RND transporter periplasmic adaptor subunit EmhA
3280 Protein Added: CAA12346.1 espA type III secretion system LEE translocon filament protein EspA
3281 Protein Added: CAA12348.1 espA type III secretion system LEE translocon filament protein EspA
3282 Protein Added: AEM17342.1 cdtB cytolethal distending toxin nuclease subunit CdtB
3283 Protein Added: AAC33154.1 lngA type IV pilus longus major pilin
3284 Protein Added: AEQ14997.1 eilA HilA family transcriptional regulator EilA
3285 Protein Added: AEQ15694.1 capU putative hexosyltransferase CapU
3286 Protein Added: AAC33908.1 merC organomercurial transporter MerC
3287 Protein Added: CCE21264.1 agg3A aggregative adherence fimbria 3 major subunit Agg3A
3288 Protein Added: EHE72460.1 pmrA multidrug efflux MFS transporter PmrA
3289 Protein Added: EHF16244.1 aatA dispersin export ABC transporter outer membrane protein AatA
3290 Protein Added: EHF16297.1 aggB aggregative adherence fimbria I minor subunit AggB
3291 Protein Added: EHF16298.1 aggA aggregative adherence fimbria I major subunit AggA
3292 Protein Added: AET11941.1 nleA type III secretion system effector NleA
3293 Protein Added: AET11995.1 nleA type III secretion system effector NleA
3294 Protein Added: AET12008.1 nleA type III secretion system effector NleA
3295 Protein Added: BAL46940.1 eae intimin type alpha
3296 Protein Added: BAL46941.1 eae intimin type epsilon
3297 Protein Added: BAL47132.1 eae intimin type epsilon
3298 Protein Added: BAL47176.1 eae intimin type rho
3299 Protein Added: BAL47179.1 eae intimin type epsilon
3300 Protein Added: BAL47181.1 eae intimin type alpha
3301 Protein Added: AEZ42789.1 tir type III secretion system LEE translocated intimin receptor Tir
3302 Protein Added: AEZ43710.1 nleA type III secretion system effector NleA
3303 Protein Added: AAQ92182.1 emhC efflux RND transporter outer membrane subunit EmhC
3304 Protein Added: CAA77068.1 aggA aggregative adherence fimbria I major subunit AggA
3305 Protein Added: AAR02190.1 aggA aggregative adherence fimbria I major subunit AggA
3306 Protein Added: BAL72684.1 cdtB cytolethal distending toxin nuclease subunit CdtB
3307 Protein Added: BAL72697.1 cdtB cytolethal distending toxin nuclease subunit CdtB
3308 Protein Added: AAR12207.1 cdtB cytolethal distending toxin type III/V nuclease subunit CdtB
3309 Protein Added: AAC69584.1 ybtQ yersiniabactin ABC transporter ATP-binding/permease protein YbtQ
3310 Protein Added: AAR13270.1 iroN siderophore salmochelin receptor IroN
3311 Protein Added: AFH14350.1 faeG F4 fimbrial adhesin subunit FaeG
3312 Protein Added: CAD87828.1 sta1 heat-stable enterotoxin ST-I group a
3313 Protein Added: BAA34299.1 mexX multidrug efflux RND transporter periplasmic adaptor subunit MexX
3314 Protein Added: AFK88558.1 auto-sat serine protease autotransporter toxin Sat
3315 Protein Added: AFM31243.1 tccP Tir-cytoskeleton coupling protein TccP2
3316 Protein Added: AFM70729.1 copA copper-translocating P-type ATPase CopA
3317 Protein Added: AFM70730.1 copB copper/silver-translocating P-type ATPase CopB
3318 Protein Added: AAC82360.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3319 Protein Added: AAR82963.1 nirA nickel resistance membrane nickel efflux protein NirA
3320 Protein Added: AAR82964.1 nirB nickel-sensing transcriptional repressor NirB
3321 Protein Added: AAR82966.1 nirD nickel resistance OB fold protein NirD
3322 Protein Added: AFQ65076.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3323 Protein Added: CAA50007.1 cnf1 cytotoxic necrotizing factor CNF1
3324 Protein Added: CAA12345.1 espA type III secretion system LEE translocon filament protein EspA
3325 Protein Added: CAA12350.1 espA type III secretion system LEE translocon filament protein EspA
3326 Protein Added: CAA12351.1 espA type III secretion system LEE translocon filament protein EspA
3327 Protein Added: AFS59871.1 sepA serine protease autotransporter toxin SepA
3328 Protein Added: AFS85685.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3329 Protein Added: AAC99337.1 espA type III secretion system LEE translocon filament protein EspA
3330 Protein Added: CAA21388.1 ybtP yersiniabactin ABC transporter ATP-binding/permease protein YbtP
3331 Protein Added: BAA36431.1 merR mercury resistance transcriptional regulator MerR
3332 Protein Added: BAA36433.1 merD mercury resistance co-regulator MerD
3333 Protein Added: CAA40744.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3334 Protein Added: CAA23532.1 ltcA heat-labile enterotoxin LT subunit A
3335 Protein Added: CAA32535.1 fim41a fimbrial adhesin F41 protein Fim41a
3336 Protein Added: AAD05936.1 copP copper-binding metallochaperone CopP
3337 Protein Added: AAS07580.1 stx2Ac Shiga toxin Stx2c subunit A
3338 Protein Added: AAS07581.1 stx2Bc Shiga toxin Stx2c subunit B
3339 Protein Added: AAS07582.1 stx2Ac Shiga toxin Stx2c subunit A
3340 Protein Added: AAS07586.1 stx2Ad Shiga toxin Stx2d subunit A
3341 Protein Added: AAS07588.1 stx2Ad Shiga toxin Stx2d subunit A
3342 Protein Added: AAS07589.1 stx2Bd Shiga toxin Stx2d subunit B
3343 Protein Added: AAS07590.1 stx2Ac Shiga toxin Stx2c subunit A
3344 Protein Added: AAS07596.1 stx2Ac Shiga toxin Stx2c subunit A
3345 Protein Added: AAS07600.1 stx2Aa Shiga toxin Stx2a subunit A
3346 Protein Added: AAS07606.1 stx2Aa Shiga toxin Stx2a subunit A
3347 Protein Added: AAD11743.1 silE silver-binding protein SilE
3348 Protein Added: AAD11746.1 silC Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC
3349 Protein Added: AAD11748.1 silB Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB
3350 Protein Added: AAD11749.1 silA Cu(+)/Ag(+) efflux RND transporter permease subunit SilA
3351 Protein Added: AAD11750.1 silP Ag(+)-translocating P-type ATPase SilP
3352 Protein Added: AFX83959.1 subA subtilase AB5 cytotoxin subunit A
3353 Protein Added: AAS21297.1 tbtR tribuytltin resistance regulator TbtR
3354 Protein Added: CAA43585.1 stx2Ad Shiga toxin Stx2d subunit A
3355 Protein Added: AAD15663.1 tbtA multidrug efflux RND transporter periplasmic adaptor subunit TbtA
3356 Protein Added: AAD15664.1 tbtB multidrug efflux RND transporter permease subunit TbtB
3357 Protein Added: AAD15665.1 tbtM multidrug efflux RND transporter outer membrane channel subunit TbtM
3358 Protein Added: AAD17509.1 f17a F17A fimbrial adhesin
3359 Protein Added: AAD17510.1 f17a F17A fimbrial adhesin
3360 Protein Added: AAD17511.1 f17a F17A fimbrial adhesin
3361 Protein Added: AAD17513.1 f17g F17G fimbrial adhesin
3362 Protein Added: AAD17514.1 f17g F17G fimbrial adhesin
3363 Protein Added: AAD17515.1 f17g F17G fimbrial adhesin
3364 Protein Added: AAA18786.1 cdtB cytolethal distending toxin type II nuclease subunit CdtB
3365 Protein Added: CAA77320.1 merR mercury resistance transcriptional regulator MerR
3366 Protein Added: CAA77324.1 merD mercury resistance co-regulator MerD
3367 Protein Added: CAA77325.1 merE broad-spectrum mercury transporter MerE
3368 Protein Added: CAA81047.1 mtrR multidrug efflux system transcriptional repressor MtrR
3369 Protein Added: AAA74436.1 mexA multidrug efflux RND transporter periplasmic adaptor subunit MexA
3370 Protein Added: AGC14252.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3371 Protein Added: AAS47019.1 nleC type III secretion system effector zinc metalloprotease NleC
3372 Protein Added: AGC85979.1 iss increased serum survival lipoprotein Iss
3373 Protein Added: CCG33322.1 iroN siderophore salmochelin receptor IroN
3374 Protein Added: AAS50165.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3375 Protein Added: AAO18187.2 sdeB multidrug efflux RND transporter permease subunit SdeB
3376 Protein Added: AAA98221.1 merR mercury resistance transcriptional regulator MerR
3377 Protein Added: AAS76847.1 fedA F18 fimbrial major subunit FedA
3378 Protein Added: AAD25959.1 merR2 mercury resistance transcriptional regulator MerR2
3379 Protein Added: AAA98245.1 merA mercury(II) reductase
3380 Protein Added: AAD27810.1 aafC aggregative adherence fimbria II usher protein AafC
3381 Protein Added: AAA24698.1 tsh temperature-sensitive protease autotransporter hemagglutinin Tsh
3382 Protein Added: CAE82650.1 faeG F4 fimbrial adhesin subunit FaeG
3383 Protein Added: CAE82653.1 faeG F4 fimbrial adhesin subunit FaeG
3384 Protein Added: CAE82670.1 faeG F4 fimbrial adhesin subunit FaeG
3385 Protein Added: AAD28079.1 hlyE hemolysin HlyE
3386 Protein Added: CAA83535.1 aggR aggregative adherence transcriptional regulator AggR
3387 Protein Added: EMS03085.1 aggA aggregative adherence fimbria I major subunit AggA
3388 Protein Added: CAE55775.1 auto-sat serine protease autotransporter toxin Sat
3389 Protein Added: AAT36311.1 rpeA serine protease autotransporter colonization factor RpeA
3390 Protein Added: BAA77749.1 stx2Ab Shiga toxin Stx2b subunit A
3391 Protein Added: BAA77750.1 stx2Bb Shiga toxin Stx2b subunit B
3392 Protein Added: BAA77751.1 stx2Ab Shiga toxin Stx2b subunit A
3393 Protein Added: CAA46767.1 stx2Ab Shiga toxin Stx2b subunit A
3394 Protein Added: CAA46768.1 stx2Bb Shiga toxin Stx2b subunit B
3395 Protein Added: CAA77936.1 emrE multidrug efflux SMR transporter EmrE
3396 Protein Added: AAT65972.1 stx2Ac Shiga toxin Stx2c subunit A
3397 Protein Added: AAT66000.1 stx2Ac Shiga toxin Stx2c subunit A
3398 Protein Added: AAT66010.1 stx2Aa Shiga toxin Stx2a subunit A
3399 Protein Added: AAT66011.1 stx2Ba Shiga toxin Stx2a subunit B
3400 Protein Added: AAT66012.1 stx2Ac Shiga toxin Stx2c subunit A
3401 Protein Added: AGL46515.1 merF mercury resistance system transport protein MerF
3402 Protein Added: AAT68784.1 subB subtilase AB5 cytotoxin subunit B
3403 Protein Added: AAT68785.1 subA subtilase AB5 cytotoxin subunit A
3404 Protein Added: AAT76975.1 lpfA long polar fimbria major subunit LpfA-O113
3405 Protein Added: AAD39553.1 ttgA toluene efflux RND transporter periplasmic adaptor subunit TtgA
3406 Protein Added: AAU01878.1 sepA serine protease autotransporter toxin SepA
3407 Protein Added: AAN38824.2 adeE multidrug efflux RND transporter permease subunit AdeE
3408 Protein Added: AAU10477.1 adeD multidrug efflux RND transporter periplasmic adaptor subunit AdeD
3409 Protein Added: AAU88208.1 stx2Ac Shiga toxin Stx2c subunit A
3410 Protein Added: AAU88264.1 cdtB cytolethal distending toxin nuclease subunit CdtB
3411 Protein Added: AAA57451.1 aggD aggregative adherence fimbria I chaperone AggD
3412 Protein Added: AAA57452.1 aggC aggregative adherence fimbria I usher protein AggC
3413 Protein Added: AAA57453.1 aggB aggregative adherence fimbria I minor subunit AggB
3414 Protein Added: AAA57454.1 aggA aggregative adherence fimbria I major subunit AggA
3415 Protein Added: CAA85366.1 stx1Aa Shiga toxin Stx1a subunit A
3416 Protein Added: CAA85368.1 stx1Aa Shiga toxin Stx1a subunit A
3417 Protein Added: CAA85370.1 stx1Ac Shiga toxin Stx1c subunit A
3418 Protein Added: CAA85371.1 stx1Bc Shiga toxin Stx1c subunit B
3419 Protein Added: EQX61716.1 aggA aggregative adherence fimbria I major subunit AggA
3420 Protein Added: AAU95470.1 nleB type III secretion system effector arginine glycosyltransferase NleB
3421 Protein Added: AAU95768.1 mepA multidrug efflux MATE transporter MepA
3422 Protein Added: CAG17536.1 tir type III secretion system LEE translocated intimin receptor Tir
3423 Protein Added: CAG17541.1 espA type III secretion system LEE translocon filament protein EspA
3424 Protein Added: AAD43578.1 astA heat-stable enterotoxin EAST1
3425 Protein Added: AAD43579.1 astA heat-stable enterotoxin EAST1
3426 Protein Added: CAA85780.1 stx2Aa Shiga toxin Stx2a subunit A
3427 Protein Added: AAA80193.1 mtrC multidrug efflux RND transporter periplasmic adaptor subunit MtrC
3428 Protein Added: AAD44693.1 mtrA efflux transporter MtrCDE transcriptional activator MtrA
3429 Protein Added: AAD47284.1 terZ tellurium resistance-associated protein TerZ
3430 Protein Added: AAW38464.1 lmrS multidrug efflux MFS transporter LmrS
3431 Protein Added: CAI43856.1 espF type III secretion system LEE effector EspF
3432 Protein Added: CAI43860.1 espB type III secretion system LEE translocon pore-forming subunit EspB
3433 Protein Added: CAI43862.1 espA type III secretion system LEE translocon filament protein EspA
3434 Protein Added: CAI43865.1 eae intimin type epsilon
3435 Protein Added: CAI43867.1 tir type III secretion system LEE translocated intimin receptor Tir
3436 Protein Added: AAD54074.1 farB fatty acid resistance MFS efflux transporter permease subunit FarB
3437 Protein Added: BAA84838.1 bfpA bundle-forming pilus major subunit BfpA
3438 Protein Added: BAA84859.1 perA BFP system transcriptional regulator PerA
3439 Protein Added: AAT35241.2 tsh temperature-sensitive protease autotransporter hemagglutinin Tsh
3440 Protein Added: AAF03351.1 espF type III secretion system LEE effector EspF
3441 Protein Added: AHW84565.1 aaiC type VI secretion system protein AaiC/Hcp2
3442 Protein Added: AHW84567.1 aaiC type VI secretion system protein AaiC/Hcp2
3443 Protein Added: AAX47728.1 tir type III secretion system LEE translocated intimin receptor Tir
3444 Protein Added: AAX47729.1 tir type III secretion system LEE translocated intimin receptor Tir
3445 Protein Added: AAX47730.1 tir type III secretion system LEE translocated intimin receptor Tir
3446 Protein Added: AAX47731.1 tir type III secretion system LEE translocated intimin receptor Tir
3447 Protein Added: CAA58525.1 pcoA multicopper oxidase PcoA
3448 Protein Added: CAA58526.1 pcoB copper-binding protein PcoB
3449 Protein Added: CAA58527.1 pcoC copper resistance system metallochaperone PcoC
3450 Protein Added: CAA58528.1 pcoD copper resistance inner membrane protein PcoD
3451 Protein Added: CAA58529.1 pcoR copper response regulator transcription factor PcoR
3452 Protein Added: CAA58530.1 pcoS copper resistance membrane spanning protein PcoS
3453 Protein Added: CAA58532.1 pcoE copper resistance system metallochaperone PcoE
3454 Protein Added: AAX63244.1 fedF F18 fimbrial adhesin subunit FedF
3455 Protein Added: AAX63245.1 fedF F18 fimbrial adhesin subunit FedF
3456 Protein Added: AAX63259.1 fedF F18 fimbrial adhesin subunit FedF
3457 Protein Added: AAX63270.1 fedF F18 fimbrial adhesin subunit FedF
3458 Protein Added: AAY25390.1 tir type III secretion system LEE translocated intimin receptor Tir
3459 Protein Added: AAY25394.1 tir type III secretion system LEE translocated intimin receptor Tir
3460 Protein Added: AAY25395.1 tir type III secretion system LEE translocated intimin receptor Tir
3461 Protein Added: AAF14522.1 mexX multidrug efflux RND transporter periplasmic adaptor subunit MexX
3462 Protein Added: CAI91198.1 stx2Ag Shiga toxin Stx2g subunit A
3463 Protein Added: AAF16681.1 srpS solvent efflux transporter transcriptional repressor SrpS
3464 Protein Added: AAF16682.1 srpR solvent efflux transporter antirepressor SrpR
3465 Protein Added: CAA54115.1 nfaE Dr family non-fimbrial adhesin I chaperone NfaE
3466 Protein Added: AAF23359.1 eae intimin type epsilon
3467 Protein Added: CAB64953.1 stx2Af Shiga toxin Stx2f subunit A
3468 Protein Added: AAY63864.1 stx2Ad Shiga toxin Stx2d subunit A
3469 Protein Added: AAY63865.1 stx2Bd Shiga toxin Stx2d subunit B
3470 Protein Added: CDY80020.1 hsp20 small heat shock protein sHSP20
3471 Protein Added: AAY90615.1 emhC efflux RND transporter outer membrane subunit EmhC
3472 Protein Added: KGL71342.1 silF Ag(+)/Cu(+) efflux RND transporter periplasmic metallochaperone SilF
3473 Protein Added: AAF40764.1 farB fatty acid resistance MFS efflux transporter permease subunit FarB
3474 Protein Added: AAF42063.1 mtrC multidrug efflux RND transporter periplasmic adaptor subunit MtrC
3475 Protein Added: AAB26855.2 nfaE Dr family non-fimbrial adhesin I chaperone NfaE
3476 Protein Added: CAB82448.1 cnrY nickel resistance system anti-sigma factor CnrY
3477 Protein Added: AAZ76497.1 ehxA enterohemolysin
3478 Protein Added: AAZ76514.1 espP serine protease autotransporter EspP
3479 Protein Added: AAZ76524.1 subA subtilase AB5 cytotoxin subunit A
3480 Protein Added: AAZ87985.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
3481 Protein Added: AAZ88030.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3
3482 Protein Added: AAZ89804.1 sigA serine protease autotransporter toxin SigA
3483 Protein Added: AAZ91108.1 ipaD type III secretion system needle tip complex protein IpaD
3484 Protein Added: ABA25986.1 merF mercury resistance system transport protein MerF
3485 Protein Added: AAX22079.2 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3486 Protein Added: AAA65102.1 nccX periplasmic metal sensor NccX
3487 Protein Added: AAA65103.1 nccH nickel/cobalt/cadmium resistance ECF sigma factor NccH
3488 Protein Added: ABB16332.1 tir type III secretion system LEE translocated intimin receptor Tir
3489 Protein Added: ABB36584.1 stx2Ac Shiga toxin Stx2c subunit A
3490 Protein Added: ABB36586.1 stx2Ad Shiga toxin Stx2d subunit A
3491 Protein Added: ABB61187.1 iroN siderophore salmochelin receptor IroN
3492 Protein Added: ABB62096.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
3493 Protein Added: ABB62098.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
3494 Protein Added: ABB64677.1 ipaD type III secretion system needle tip complex protein IpaD
3495 Protein Added: ABB65884.1 ipaH3 T3SS effector E3 ubiquitin-protein ligase IpaH3
3496 Protein Added: ABB66229.1 ipaH9.8 T3SS effector E3 ubiquitin-protein ligase IpaH9.8
3497 Protein Added: ABB68924.1 virF AraC family invasion system transcriptional regulator VirF
3498 Protein Added: KLB41245.1 copL transcriptional regulator CopL
3499 Protein Added: CAI79539.1 eatA serine protease autotransporter toxin EatA
3500 Protein Added: CAJ44959.1 mchF microcin H47 export transporter peptidase/ATP-binding subunit MchF
3501 Protein Added: CAB77169.2 stx2Ae Shiga toxin Stx2e subunit A
3502 Protein Added: CAB94149.1 stx2Ba Shiga toxin Stx2a subunit B
3503 Protein Added: AAC34727.1 faeG F4 fimbrial adhesin subunit FaeG
3504 Protein Added: BAA96815.1 tir type III secretion system LEE translocated intimin receptor Tir
3505 Protein Added: AAA69514.1 f17g F17G fimbrial adhesin
3506 Protein Added: CAA88252.1 sepA serine protease autotransporter toxin SepA
3507 Protein Added: BAE79899.1 smfY multidrug efflux MFS transporter SmfY
3508 Protein Added: ABE06598.1 sfaS S-fimbrial adhesin minor subunit SfaS
3509 Protein Added: ABE10324.1 cnf1 cytotoxic necrotizing factor CNF1
3510 Protein Added: CAJ34994.1 bfpA bundle-forming pilus major subunit BfpA
3511 Protein Added: ABF13034.1 merD mercury resistance co-regulator MerD
3512 Protein Added: ABF13067.1 cnrC nickel efflux RND transporter outer membrane subunit CnrC
3513 Protein Added: ABF13069.1 cnrA nickel efflux RND transporter permease subunit CnrA
3514 Protein Added: ABF13070.1 cnrT nickel diffusion facilitator CnrT
3515 Protein Added: ABF14406.1 ncrA Metal Resistance
3516 Protein Added: ABF14407.1 ncrB nickel-sensing transcriptional repressor NcrB
3517 Protein Added: CAK02719.1 cnf1 cytotoxic necrotizing factor CNF1
3518 Protein Added: CAA90630.1 stx2Aa Shiga toxin Stx2a subunit A
3519 Protein Added: BAT41861.1 eae intimin type alpha
3520 Protein Added: CAK15125.1 mexE MexE family multidrug efflux RND transporter periplasmic adaptor subunit
3521 Protein Added: AAG01033.1 stx2Ac Shiga toxin Stx2c subunit A
3522 Protein Added: AAB59153.1 cadC Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC
3523 Protein Added: ABF61434.1 ncrA Metal Resistance
3524 Protein Added: ABF61435.1 ncrB nickel-sensing transcriptional repressor NcrB
3525 Protein Added: ABF61437.1 ncrY nickel resistance OB fold protein NcrY
3526 Protein Added: AAG05881.1 mexE MexE family multidrug efflux RND transporter periplasmic adaptor subunit
3527 Protein Added: AAG10695.1 perA BFP system transcriptional regulator PerA
3528 Protein Added: WP_000697899.1 pmrA pmrA
3529 Protein Added: WP_097509477.1 acrB acrB
3530
3531 - AMRFinder HMM library Changes:
3532 Prev. Release: 574
3533 This Release: 610
3534 Removed: 2
3535 Added: 38
3536 Changed: 572
3537 HMM Removed: NF000478.2 linco_LnuE
3538 HMM Removed: NF012180.1 tet_MFS_43
3539 HMM Added: NF000131.1 MATE_multi_MepA
3540 HMM Added: NF000249.1 MexE
3541 HMM Added: NF000252.1 MexX
3542 HMM Added: NF000263.1 MATE_multi_NorM
3543 HMM Added: NF000282.2 RND_permease_1
3544 HMM Added: NF000314.1 adeB
3545 HMM Added: NF000315.1 adeC-adeK-oprM
3546 HMM Added: NF000336.1 emrE
3547 HMM Added: NF007842.1 PRK10555.1
3548 HMM Added: NF010310.2 PRK13747.1
3549 HMM Added: NF010315.0 PRK13752.1
3550 HMM Added: NF011706.2 PRK15127.1
3551 HMM Added: NF028537.1 P_eth_NH2_trans
3552 HMM Added: NF033086.2 penta_rpt_Qnr
3553 HMM Added: NF033134.0 cmlA_floR
3554 HMM Added: NF033142.1 efflux_OM_AdeC
3555 HMM Added: NF033143.1 efflux_OM_AdeK
3556 HMM Added: NF033555.1 lyase_MerB
3557 HMM Added: NF033560.1 merT_RC607
3558 HMM Added: NF033565.0 trans_MerF
3559 HMM Added: NF033627.3 intimin_all
3560 HMM Added: NF033637.1 transloc_TIR
3561 HMM Added: NF033639.1 intimin_alpha
3562 HMM Added: NF033643.1 EspJ_gen
3563 HMM Added: NF033646.1 toxin_EAST1
3564 HMM Added: NF033651.1 cyto_nec_fctrs
3565 HMM Added: NF033658.1 Shiga_Stx1A
3566 HMM Added: NF033659.0 Shiga_Stx1B
3567 HMM Added: NF033660.0 Shiga_Stx2B
3568 HMM Added: NF033661.1 Shiga_Stx2A
3569 HMM Added: NF033727.1 chaperon_ArsD
3570 HMM Added: NF033781.1 chaper_CopP
3571 HMM Added: NF033783.1 coreg_MerD
3572 HMM Added: NF033784.1 transport_merC
3573 HMM Added: NF033786.1 phenyl_MerG
3574 HMM Added: NF033834.1 RND_adapt_MexA
3575 HMM Added: TIGR02052.1 TIGR02052
3576 HMM Added: TIGR02053.1 TIGR02053
3577 ---------------------------------------------------------------------
3578 Changes included in 2019-04-29.1
3579 ---------------------------------------------------------------------
3580
3581 Summary: In addition to the usual addition of 134 new genes and alleles
3582 community feedback led to the renaming of a few dfr genes. The family
3583 heirarchy file (fam.tab) was cleaned up by removing a number of superfluous
3584 entries.
3585
3586 Changes included in 2019-04-29.1
3587 - Protein changes:
3588 Prev. Release: 4810
3589 This Release: 4942
3590 Removed: 1
3591 Added: 134
3592 Modified: 3
3593 Protein Removed: WP_109545040.1 chrB
3594 Protein Added: WP_000054744.1 satA_Ba
3595 Protein Added: WP_001211209.1 blaADC-140
3596 Protein Added: WP_001211210.1 blaADC-185
3597 Protein Added: WP_001211214.1 blaADC-144
3598 Protein Added: WP_001211215.1 blaADC-115
3599 Protein Added: WP_001572373.1 mcr-9.1
3600 Protein Added: WP_002126587.1 blaADC-120
3601 Protein Added: WP_002157727.1 blaADC-117
3602 Protein Added: WP_003112187.1 blaADC-191
3603 Protein Added: WP_003242546.1 satA_Bs
3604 Protein Added: WP_004643536.1 blaADC-128
3605 Protein Added: WP_004700205.1 blaADC-133
3606 Protein Added: WP_004707701.1 blaADC-131
3607 Protein Added: WP_004712857.1 blaADC-119
3608 Protein Added: WP_004790939.1 blaADC-135
3609 Protein Added: WP_004840559.1 blaADC-123
3610 Protein Added: WP_004886093.1 blaADC-130
3611 Protein Added: WP_005039111.1 blaADC-129
3612 Protein Added: WP_005046018.1 blaADC-127
3613 Protein Added: WP_005068074.1 blaADC-132
3614 Protein Added: WP_005109685.1 blaADC-121
3615 Protein Added: WP_005123276.1 blaADC-122
3616 Protein Added: WP_005131186.1 blaADC-125
3617 Protein Added: WP_005307218.1 blaADC-134
3618 Protein Added: WP_005404206.1 blaOXA-813
3619 Protein Added: WP_005405613.1 blaOXA-814
3620 Protein Added: WP_013197184.1 blaADC-193
3621 Protein Added: WP_014207272.1 blaADC-149
3622 Protein Added: WP_016137488.1 blaADC-136
3623 Protein Added: WP_016140427.1 blaADC-137
3624 Protein Added: WP_016146025.1 blaADC-138
3625 Protein Added: WP_017386568.1 blaADC-150
3626 Protein Added: WP_017778762.1 mcr-3.27
3627 Protein Added: WP_017816757.1 blaADC-116
3628 Protein Added: WP_026382828.1 blaOXA-114i
3629 Protein Added: WP_026444036.1 blaOXA-816
3630 Protein Added: WP_032039838.1 blaADC-139
3631 Protein Added: WP_032053762.1 blaOXA-819
3632 Protein Added: WP_032057042.1 blaOXA-820
3633 Protein Added: WP_032062810.1 blaADC-141
3634 Protein Added: WP_032625176.1 blaACT-66
3635 Protein Added: WP_033502167.1 blaADC-143
3636 Protein Added: WP_034670108.1 blaOXA-818
3637 Protein Added: WP_034688190.1 blaOXA-812
3638 Protein Added: WP_036299413.1 sulR
3639 Protein Added: WP_039246976.1 blaADC-148
3640 Protein Added: WP_039258389.1 blaADC-146
3641 Protein Added: WP_039270258.1 blaADC-145
3642 Protein Added: WP_044718369.1 blaADC-147
3643 Protein Added: WP_047726486.1 blaACT-65
3644 Protein Added: WP_053498400.1 blaOXA-114h
3645 Protein Added: WP_054437016.1 blaOXA-114j
3646 Protein Added: WP_054471662.1 blaOXA-114m
3647 Protein Added: WP_054500785.1 blaOXA-789
3648 Protein Added: WP_054517040.1 blaOXA-114l
3649 Protein Added: WP_057061999.1 blaOXA-821
3650 Protein Added: WP_059247009.1 blaADC-184
3651 Protein Added: WP_063099318.1 blaADC-151
3652 Protein Added: WP_063147148.1 blaACT-67
3653 Protein Added: WP_072292271.1 blaADC-186
3654 Protein Added: WP_075040046.1 blaOXA-817
3655 Protein Added: WP_076412384.1 blaOXA-114p
3656 Protein Added: WP_099595307.1 dfrA35
3657 Protein Added: WP_103663397.1 sulX
3658 Protein Added: WP_106743337.1 mcr-1.18
3659 Protein Added: WP_109545052.1 mcr-1.14
3660 Protein Added: WP_110612827.1 blaOXA-796
3661 Protein Added: WP_111280830.1 blaOXA-815
3662 Protein Added: WP_115470049.1 blaKPC-40
3663 Protein Added: WP_117664257.1 cfxA6
3664 Protein Added: WP_125052776.1 blaADC-114
3665 Protein Added: WP_136512051.1 blaACT-68
3666 Protein Added: WP_136512052.1 blaADC-109
3667 Protein Added: WP_136512053.1 blaADC-110
3668 Protein Added: WP_136512054.1 blaADC-112
3669 Protein Added: WP_136512055.1 blaADC-113
3670 Protein Added: WP_136512056.1 blaADC-187
3671 Protein Added: WP_136512057.1 blaADC-188
3672 Protein Added: WP_136512058.1 blaADC-189
3673 Protein Added: WP_136512059.1 blaADC-190
3674 Protein Added: WP_136512060.1 blaADC-192
3675 Protein Added: WP_136512061.1 blaADC-24
3676 Protein Added: WP_136512062.1 blaADC-65
3677 Protein Added: WP_136512063.1 blaADC-66
3678 Protein Added: WP_136512064.1 blaCTX-M-225
3679 Protein Added: WP_136512065.1 blaCTX-M-226
3680 Protein Added: WP_136512066.1 blaFRI-7
3681 Protein Added: WP_136512067.1 blaIMI-18
3682 Protein Added: WP_136512068.1 blaIMP-39
3683 Protein Added: WP_136512069.1 blaIMP-46
3684 Protein Added: WP_136512070.1 blaKPC-42
3685 Protein Added: WP_136512071.1 blaKPC-43
3686 Protein Added: WP_136512072.1 blaNDM-28
3687 Protein Added: WP_136512073.1 blaOXA-114k
3688 Protein Added: WP_136512074.1 blaOXA-114n
3689 Protein Added: WP_136512075.1 blaOXA-114q
3690 Protein Added: WP_136512076.1 blaOXA-114r
3691 Protein Added: WP_136512077.1 blaOXA-114s
3692 Protein Added: WP_136512078.1 blaOXA-114t
3693 Protein Added: WP_136512079.1 blaOXA-114u
3694 Protein Added: WP_136512080.1 blaOXA-114v
3695 Protein Added: WP_136512081.1 blaOXA-114w
3696 Protein Added: WP_136512082.1 blaOXA-114x
3697 Protein Added: WP_136512083.1 blaOXA-787
3698 Protein Added: WP_136512084.1 blaOXA-788
3699 Protein Added: WP_136512085.1 blaOXA-793
3700 Protein Added: WP_136512086.1 blaOXA-794
3701 Protein Added: WP_136512087.1 blaOXA-795
3702 Protein Added: WP_136512088.1 blaOXA-797
3703 Protein Added: WP_136512089.1 blaOXA-798
3704 Protein Added: WP_136512090.1 blaOXA-799
3705 Protein Added: WP_136512091.1 blaOXA-800
3706 Protein Added: WP_136512092.1 blaOXA-801
3707 Protein Added: WP_136512093.1 blaOXA-802
3708 Protein Added: WP_136512094.1 blaOXA-803
3709 Protein Added: WP_136512095.1 blaOXA-804
3710 Protein Added: WP_136512096.1 blaOXA-805
3711 Protein Added: WP_136512097.1 blaOXA-806
3712 Protein Added: WP_136512098.1 blaOXA-807
3713 Protein Added: WP_136512099.1 blaOXA-808
3714 Protein Added: WP_136512100.1 blaOXA-809
3715 Protein Added: WP_136512101.1 blaOXA-810
3716 Protein Added: WP_136512102.1 blaOXA-811
3717 Protein Added: WP_136512103.1 blaOXA-823
3718 Protein Added: WP_136512104.1 blaOXA-824
3719 Protein Added: WP_136512105.1 blaPER-13
3720 Protein Added: WP_136512106.1 blaVIM-48
3721 Protein Added: WP_136512107.1 blaVIM-55
3722 Protein Added: WP_136512108.1 blaVIM-63
3723 Protein Added: WP_136512109.1 blaVIM-66
3724 Protein Added: WP_136512110.1 mcr-1.16
3725 Protein Added: WP_136512111.1 mcr-1.17
3726 Protein Added: WP_136512112.1 mcr-3.29
3727 Protein Modified: WP_001031075.1 dfr18 updated to WP_001031075.1 dfrA18
3728 Protein Modified: WP_032490189.1 dfrA18 updated to WP_032490189.1 dfrA19
3729 Protein Modified: WP_063843245.1 chrB updated to WP_063843245.1 chrB_rRNA_meth
3730 - AMR HMM library Changes:
3731 Prev. Release: 571
3732 This Release: 574
3733 Removed: 0
3734 Added: 3
3735 Changed: 571
3736 HMM Added: NF033818.0 blaOXA-114_like
3737 HMM Added: NF033836.1 polymyxin_MCR9
3738 HMM Added: NF033851.1 trim_DfrA35
3739 HMM Modified: NF000039.1 trim_Dfr18 renamed to NF000039.1 trim_DfrA18
3740 HMM Modified: NF000041.1 trim_DfrA18_A19 renamed to NF000041.1 trim_DfrA19
3741 HMM Modified: NF000422.2 blaPDC updated to NF000422.6 blaPDC
3742 - Protein family changes:
3743 Prev. Release: 1177
3744 This Release: 1119
3745 Removed: 68
3746 Added: 10
3747 Modified: 4
3748 Family Removed: - PORIN
3749 Family Removed: - aac(1)
3750 Family Removed: - aac(3')-IIe
3751 Family Removed: - aac(3)-Ie
3752 Family Removed: - aac(3)-VI
3753 Family Removed: - aac(3)-Vb
3754 Family Removed: - aac(6')-Ib8
3755 Family Removed: - aacA44
3756 Family Removed: - aadA1bt
3757 Family Removed: - aadA1r
3758 Family Removed: - aadA24
3759 Family Removed: - ampC_Eae
3760 Family Removed: - ampH
3761 Family Removed: - ampS
3762 Family Removed: - ant(3'')(9)
3763 Family Removed: - ant(3'')-Ii
3764 Family Removed: - aph(3')-Ic
3765 Family Removed: - arr-Cb
3766 Family Removed: - blaCMG
3767 Family Removed: - blaKLUG
3768 Family Removed: - blaLMB
3769 Family Removed: - blaMSI-OXA
3770 Family Removed: - blaOXA_missing
3771 Family Removed: - blaPNGM
3772 Family Removed: - blaZEG
3773 Family Removed: - blmS
3774 Family Removed: - catA12
3775 Family Removed: - ccrA
3776 Family Removed: NF000488.1 chrB
3777 Family Removed: - cml
3778 Family Removed: - cmlA7
3779 Family Removed: - cmlA9
3780 Family Removed: NF000039.1 dfr18
3781 Family Removed: NF000041.1 dfrA18_dfrA19
3782 Family Removed: - dfrA1_var
3783 Family Removed: - dfrA29
3784 Family Removed: - dfrA33
3785 Family Removed: - dfrB7
3786 Family Removed: - flo
3787 Family Removed: - mef(E)
3788 Family Removed: - mef(G)
3789 Family Removed: - mef(I)
3790 Family Removed: - mph(D)
3791 Family Removed: - nimF
3792 Family Removed: - nimH
3793 Family Removed: - omp35
3794 Family Removed: - ompE35
3795 Family Removed: - otr(C)
3796 Family Removed: - penA
3797 Family Removed: - sat2A
3798 Family Removed: - sat3A
3799 Family Removed: - spc
3800 Family Removed: - sul1delta
3801 Family Removed: - vanH-Ac2
3802 Family Removed: - vanH-F
3803 Family Removed: - vanR-Pt
3804 Family Removed: - vanR-Pt2
3805 Family Removed: - vanS-I
3806 Family Removed: - vanSc
3807 Family Removed: - vanTc4
3808 Family Removed: - vanX-Ac2
3809 Family Removed: - vanX-F
3810 Family Removed: - vanX-Pt2
3811 Family Removed: - vanY-40021673
3812 Family Removed: - vanY-D4
3813 Family Removed: - vanY-D5
3814 Family Removed: - vanY-M
3815 Family Removed: - vanY-Pt2
3816 Family Added: NF033818.0 blaOXA-114_like
3817 Family Added: NF033851.1 dfrA35
3818 Family Added: NF033124.1 estX
3819 Family Added: NF033836.1 mcr-9
3820 Family Added: - satA_Bs
3821 Family Added: - sulR
3822 Family Added: - sulX
3823 Family Changed: NF000422.2 blaPDC updated to NF000422.6 blaPDC
3824 Family Changed: NF000488.1 chrB renamed to chrB_rRNA_meth
3825 Family Changed: NF000039.1 dfr18 renamed to dfrA18
3826 Family Changed: NF000041.1 dfrA18_dfrA19 renamed to dfrA19
3827 ---------------------------------------------------------------------
3828 Changes included in 2019-02-08.1
3829 ---------------------------------------------------------------------
3830
3831 Two incorrectly assigned proteins were accidentally released. They are not
3832 AMR proteins and should not have been released. This release simply removes
3833 them and is otherwise unchanged.
3834
3835 - Protein changes:
3836 Prev. Release: 4812
3837 This Release: 4810
3838 Removed: 2
3839 Added: 0
3840 Changed: 4810
3841 Protein Removed: WP_000122253.1 sat
3842 Protein Removed: WP_001045652.1 sat
3843 ---------------------------------------------------------------------
3844 Changes included in 2019-02-04.1
3845 ---------------------------------------------------------------------
3846 - Protein name changes:
3847 "inhibitor-resistant" was added to the names of:
3848 blaKPC-8
3849 blaKPC-30
3850 blaKPC-31
3851 blaKPC-32
3852 blaKPC-33
3853 - Protein changes:
3854 Prev. Release: 4730
3855 This Release: 4812
3856 Removed: 0
3857 Added: 82
3858 Protein modified: WP_063855700.1 tet(35) replaced with WP_005480402.1
3859 Protein Added: WP_000122253.1 sat
3860 Protein Added: WP_001045652.1 sat
3861 Protein Added: WP_002415638.1 poxtA
3862 Protein Added: WP_003234144.1 vmlR
3863 Protein Added: WP_029728367.1 blaB
3864 Protein Added: WP_044103626.1 blaVEB-21
3865 Protein Added: WP_046693238.1 blaADC-181
3866 Protein Added: WP_049637206.1 blaOXA-780
3867 Protein Added: WP_057691114.1 blaADC-182
3868 Protein Added: WP_058492019.1 vanI
3869 Protein Added: WP_065980086.1 blaOXA-784
3870 Protein Added: WP_069953510.1 blaAFM-1
3871 Protein Added: WP_069996660.1 mecC3
3872 Protein Added: WP_071223118.1 taeA
3873 Protein Added: WP_087343787.1 ant(6)-Ic
3874 Protein Added: WP_087344360.1 blaBBI
3875 Protein Added: WP_087344902.1 catV
3876 Protein Added: WP_087346196.1 ant(4')-Ic
3877 Protein Added: WP_087347987.1 rphC
3878 Protein Added: WP_087348261.1 rphD
3879 Protein Added: WP_087349244.1 mphJ
3880 Protein Added: WP_087349651.1 aac(6')-35
3881 Protein Added: WP_114225343.1 blaOXA-739
3882 Protein Added: WP_123002100.1 blaGES-40
3883 Protein Added: WP_123002101.1 blaKPC-38
3884 Protein Added: WP_123002102.1 blaNDM-27
3885 Protein Added: WP_123002103.1 blaVIM-61
3886 Protein Added: WP_126205827.1 blaOXA-785
3887 Protein Added: WP_127728991.1 blaFRI-6
3888 Protein Added: WP_128268231.1 mecC2
3889 Protein Added: WP_128268232.1 blaADC-183
3890 Protein Added: WP_128268233.1 blaCARB-50
3891 Protein Added: WP_128268234.1 blaCFE-2
3892 Protein Added: WP_128268235.1 blaCTX-M-215
3893 Protein Added: WP_128268236.1 blaDHA-28
3894 Protein Added: WP_128268237.1 blaKPC-39
3895 Protein Added: WP_128268238.1 blaOXA-738
3896 Protein Added: WP_128268239.1 blaOXA-740
3897 Protein Added: WP_128268240.1 blaOXA-741
3898 Protein Added: WP_128268241.1 blaOXA-742
3899 Protein Added: WP_128268242.1 blaOXA-743
3900 Protein Added: WP_128268243.1 blaOXA-744
3901 Protein Added: WP_128268244.1 blaOXA-745
3902 Protein Added: WP_128268245.1 blaOXA-746
3903 Protein Added: WP_128268246.1 blaOXA-747
3904 Protein Added: WP_128268247.1 blaOXA-748
3905 Protein Added: WP_128268248.1 blaOXA-749
3906 Protein Added: WP_128268249.1 blaOXA-750
3907 Protein Added: WP_128268250.1 blaOXA-751
3908 Protein Added: WP_128268251.1 blaOXA-752
3909 Protein Added: WP_128268252.1 blaOXA-753
3910 Protein Added: WP_128268253.1 blaOXA-754
3911 Protein Added: WP_128268254.1 blaOXA-755
3912 Protein Added: WP_128268255.1 blaOXA-756
3913 Protein Added: WP_128268256.1 blaOXA-757
3914 Protein Added: WP_128268257.1 blaOXA-758
3915 Protein Added: WP_128268258.1 blaOXA-759
3916 Protein Added: WP_128268259.1 blaOXA-760
3917 Protein Added: WP_128268260.1 blaOXA-761
3918 Protein Added: WP_128268261.1 blaOXA-762
3919 Protein Added: WP_128268262.1 blaOXA-763
3920 Protein Added: WP_128268263.1 blaOXA-764
3921 Protein Added: WP_128268264.1 blaOXA-765
3922 Protein Added: WP_128268265.1 blaOXA-766
3923 Protein Added: WP_128268266.1 blaOXA-767
3924 Protein Added: WP_128268267.1 blaOXA-768
3925 Protein Added: WP_128268268.1 blaOXA-769
3926 Protein Added: WP_128268269.1 blaOXA-770
3927 Protein Added: WP_128268270.1 blaOXA-771
3928 Protein Added: WP_128268271.1 blaOXA-772
3929 Protein Added: WP_128268272.1 blaOXA-773
3930 Protein Added: WP_128268273.1 blaOXA-774
3931 Protein Added: WP_128268274.1 blaOXA-775
3932 Protein Added: WP_128268275.1 blaOXA-776
3933 Protein Added: WP_128268276.1 blaOXA-781
3934 Protein Added: WP_128268277.1 blaOXA-782
3935 Protein Added: WP_128268278.1 blaOXA-783
3936 Protein Added: WP_128268279.1 blaOXA-786
3937 Protein Added: WP_128268280.1 blaPDC-317
3938 Protein Added: WP_128268286.1 blaVEB-20
3939 Protein Added: WP_128268287.1 blaVIM-62
3940 Protein Added: WP_128268288.1 qnrS15
3941 - AMR HMM library Changes:
3942 Prev. Release: 568
3943 This Release: 571
3944 Removed: 0
3945 Added: 3
3946 HMM Added: NF033714.1 blaBBI
3947 HMM Added: NF033736.1 blaAFM
3948 HMM Added: NF033815.0 blaOXA-364_like
3949 HMM Modified: NF000355.2 ribo_prot_ABC_F updated to NF000355.3 ribo_prot_ABC_F
3950 - Protein family changes:
3951 Prev. Release: 1161
3952 This Release: 1177
3953 Removed: 0
3954 Added: 16
3955 Family Added: - aac(6')-35
3956 Family Added: - ant(4')-Ic
3957 Family Added: - ant(6)-Ic
3958 Family Added: NF033736.1 blaAFM
3959 Family Added: NF033714.1 blaBBI
3960 Family Added: NF033815.0 blaOXA-364_like
3961 Family Added: - mecC2
3962 Family Added: - mecC3
3963 Family Added: - mphJ
3964 Family Added: - poxtA
3965 Family Added: - rphC
3966 Family Added: - rphD
3967 Family Added: - rph_gen
3968 Family Added: - satA_Ba
3969 Family Added: - taeA
3970 Family Added: - vmlR
3971 Family Changed: NF000355.2 abc-f updated to NF000355.3 abc-f
3972
3973 ---------------------------------------------------------------------
3974 Changes included in 2018-11-07.1
3975 ---------------------------------------------------------------------
3976
3977 Due to a communication error three blaOXA alleles in the AMR database have
3978 been reassigned. Alleles published by Tian, et al. (PMID:30247543) have
3979 replaced them.
3980
3981 AFY12006.1 JX846494.1 WP_072678505.1 NG_061615.1 were blaOXA-669, now they are blaOXA-732
3982 AAL47570.1 AY066004.1 WP_114699266.1 NG_061383.1 were blaOXA-666, now they are blaOXA-729
3983 AXH06203.1 MH684781.1 WP_116786836.1 NG_061623.1 were blaOXA-667, now they are blaOXA-730
3984
3985 - Protein changes:
3986 Prev. Release: 4579
3987 This Release: 4730
3988 Removed: 0
3989 Added: 151
3990 Protein Added: WP_004143591.1 blaSHV-206
3991 Protein Added: WP_004384957.1 blaCSA-2
3992 Protein Added: WP_007888761.1 blaCSA-1
3993 Protein Added: WP_011245929.1 clbB
3994 Protein Added: WP_011707905.1 blaOXA-725
3995 Protein Added: WP_012116915.1 clbA
3996 Protein Added: WP_015892743.1 clbC
3997 Protein Added: WP_016162389.1 blaOXA-673
3998 Protein Added: WP_016168805.1 blaOXA-664
3999 Protein Added: WP_016651348.1 blaOXA-670
4000 Protein Added: WP_016657654.1 blaOXA-665
4001 Protein Added: WP_016660101.1 blaOXA-671
4002 Protein Added: WP_016685888.1 blaOXA-715
4003 Protein Added: WP_017822040.1 qnrVC10
4004 Protein Added: WP_023271137.1 blaOXA-672
4005 Protein Added: WP_023341517.1 blaSHV-211
4006 Protein Added: WP_031998610.1 blaOXA-716
4007 Protein Added: WP_032018141.1 blaOXA-717
4008 Protein Added: WP_032495491.1 blaKLUC-3
4009 Protein Added: WP_032495492.1 blaKLUC-4
4010 Protein Added: WP_032974004.1 blaCMA-1
4011 Protein Added: WP_033179079.1 crpP
4012 Protein Added: WP_034612711.1 blaOXA-668
4013 Protein Added: WP_056517622.1 blaOXA-669
4014 Protein Added: WP_057097547.1 aph(2'')-If2
4015 Protein Added: WP_058652112.1 dfrA34
4016 Protein Added: WP_064733493.1 blaSHV-207
4017 Protein Added: WP_064760451.1 qepA4
4018 Protein Added: WP_064768701.1 qepA7
4019 Protein Added: WP_077096319.1 blaOXA-724
4020 Protein Added: WP_081406929.1 blaOXA-674
4021 Protein Added: WP_081853183.1 blaELM-1
4022 Protein Added: WP_092689909.1 blaOXA-666
4023 Protein Added: WP_094166899.1 blaCTX-M-224
4024 Protein Added: WP_096735335.1 blaOXA-667
4025 Protein Added: WP_096941464.1 qepA6
4026 Protein Added: WP_100663667.1 blaKLUC-5
4027 Protein Added: WP_101150415.1 blaOXA-726
4028 Protein Added: WP_104159136.1 blaSHV-224
4029 Protein Added: WP_105620838.1 blaCMA-2
4030 Protein Added: WP_109232473.1 blaSHV-220
4031 Protein Added: WP_109638756.1 qepA8
4032 Protein Added: WP_112021705.1 qepA9
4033 Protein Added: WP_113334341.1 qepA10
4034 Protein Added: WP_115196748.1 blaSHV-210
4035 Protein Added: WP_117241614.1 blaSHV-223
4036 Protein Added: WP_122630822.1 blaEFM-1
4037 Protein Added: WP_122630823.1 blaEVM-1
4038 Protein Added: WP_122630824.1 blaECM-1
4039 Protein Added: WP_122630825.1 blaEAM-1
4040 Protein Added: WP_122630826.1 blaGES-38
4041 Protein Added: WP_122630827.1 blaGES-39
4042 Protein Added: WP_122630828.1 blaVIM-53
4043 Protein Added: WP_122630829.1 blaDHT2-1
4044 Protein Added: WP_122630830.1 blaSPN79-1
4045 Protein Added: WP_122630831.1 blaCRD3-1
4046 Protein Added: WP_122630832.1 blaALG6-1
4047 Protein Added: WP_122630833.1 blaALG11-1
4048 Protein Added: WP_122630834.1 blaGRD33-1
4049 Protein Added: WP_122630835.1 blaGRD23-1
4050 Protein Added: WP_122630836.1 blaCMY-158
4051 Protein Added: WP_122630837.1 blaCMY-159
4052 Protein Added: WP_122630838.1 blaSHV-201
4053 Protein Added: WP_122630839.1 blaSHV-202
4054 Protein Added: WP_122630840.1 aph(2'')
4055 Protein Added: WP_122630841.1 blaTEM-237
4056 Protein Added: WP_122630842.1 blaOXA-655
4057 Protein Added: WP_122630843.1 blaOXA-656
4058 Protein Added: WP_122630844.1 blaOXA-733
4059 Protein Added: WP_122630845.1 blaPDC-307
4060 Protein Added: WP_122630846.1 blaPDC-308
4061 Protein Added: WP_122630847.1 blaPDC-309
4062 Protein Added: WP_122630848.1 blaPDC-310
4063 Protein Added: WP_122630849.1 blaPDC-311
4064 Protein Added: WP_122630850.1 blaPDC-312
4065 Protein Added: WP_122630851.1 blaPDC-313
4066 Protein Added: WP_122630852.1 blaPDC-314
4067 Protein Added: WP_122630853.1 blaOXA-734
4068 Protein Added: WP_122630854.1 blaOXA-735
4069 Protein Added: WP_122630855.1 blaOXA-736
4070 Protein Added: WP_122630856.1 blaOXA-737
4071 Protein Added: WP_122630857.1 blaOXA-675
4072 Protein Added: WP_122630858.1 blaOXA-676
4073 Protein Added: WP_122630859.1 blaOXA-677
4074 Protein Added: WP_122630860.1 blaOXA-678
4075 Protein Added: WP_122630861.1 blaIMP-80
4076 Protein Added: WP_122630862.1 blaCTX-M-223
4077 Protein Added: WP_122630863.1 blaSHV-205
4078 Protein Added: WP_122630864.1 blaOXA-680
4079 Protein Added: WP_122630865.1 blaSHV-208
4080 Protein Added: WP_122630866.1 blaSHV-209
4081 Protein Added: WP_122630867.1 blaSHV-212
4082 Protein Added: WP_122630868.1 blaSHV-213
4083 Protein Added: WP_122630869.1 blaSHV-214
4084 Protein Added: WP_122630870.1 blaSHV-215
4085 Protein Added: WP_122630871.1 blaSHV-216
4086 Protein Added: WP_122630872.1 blaSHV-217
4087 Protein Added: WP_122630873.1 blaSHV-218
4088 Protein Added: WP_122630874.1 blaSHV-219
4089 Protein Added: WP_122630875.1 blaSHV-221
4090 Protein Added: WP_122630876.1 blaSHV-222
4091 Protein Added: WP_122630877.1 blaSHV-225
4092 Protein Added: WP_122630878.1 blaSHV-226
4093 Protein Added: WP_122630879.1 blaSHV-227
4094 Protein Added: WP_122630880.1 blaSHV-228
4095 Protein Added: WP_122630881.1 blaOXA-681
4096 Protein Added: WP_122630882.1 blaPDC-315
4097 Protein Added: WP_122630883.1 blaPDC-316
4098 Protein Added: WP_122630884.1 blaOXA-682
4099 Protein Added: WP_122630885.1 blaOXA-683
4100 Protein Added: WP_122630886.1 blaOXA-684
4101 Protein Added: WP_122630887.1 blaOXA-685
4102 Protein Added: WP_122630888.1 blaOXA-686
4103 Protein Added: WP_122630889.1 blaOXA-687
4104 Protein Added: WP_122630890.1 blaOXA-688
4105 Protein Added: WP_122630891.1 blaOXA-689
4106 Protein Added: WP_122630892.1 blaOXA-690
4107 Protein Added: WP_122630893.1 blaOXA-691
4108 Protein Added: WP_122630894.1 blaOXA-692
4109 Protein Added: WP_122630895.1 blaOXA-693
4110 Protein Added: WP_122630896.1 blaOXA-694
4111 Protein Added: WP_122630897.1 blaOXA-695
4112 Protein Added: WP_122630898.1 blaOXA-696
4113 Protein Added: WP_122630899.1 blaOXA-697
4114 Protein Added: WP_122630900.1 blaOXA-698
4115 Protein Added: WP_122630901.1 blaOXA-699
4116 Protein Added: WP_122630902.1 blaOXA-700
4117 Protein Added: WP_122630903.1 blaOXA-701
4118 Protein Added: WP_122630904.1 blaOXA-702
4119 Protein Added: WP_122630905.1 blaOXA-703
4120 Protein Added: WP_122630906.1 blaOXA-704
4121 Protein Added: WP_122630907.1 blaOXA-705
4122 Protein Added: WP_122630908.1 blaOXA-706
4123 Protein Added: WP_122630909.1 blaOXA-707
4124 Protein Added: WP_122630910.1 blaOXA-718
4125 Protein Added: WP_122630911.1 blaOXA-719
4126 Protein Added: WP_122630912.1 blaOXA-720
4127 Protein Added: WP_122630913.1 blaOXA-721
4128 Protein Added: WP_122630914.1 blaOXA-722
4129 Protein Added: WP_122630915.1 blaOXA-723
4130 Protein Added: WP_122630916.1 blaOXA-708
4131 Protein Added: WP_122630917.1 blaOXA-709
4132 Protein Added: WP_122630918.1 blaOXA-710
4133 Protein Added: WP_122630919.1 blaOXA-711
4134 Protein Added: WP_122630920.1 blaOXA-712
4135 Protein Added: WP_122630921.1 blaOXA-713
4136 Protein Added: WP_122630922.1 blaOXA-714
4137 Protein Added: WP_122630923.1 blaOXA-777
4138 Protein Added: WP_122630924.1 blaOXA-778
4139 Protein Added: WP_122634438.1 blaOXA-779
4140 Protein Added: WP_122634439.1 blaOXA-679
4141 Gene Symbol Modified: WP_010890145.1 qacE_gen updated to WP_010890145.1 qacE
4142 Gene Symbol Modified: WP_053515552.1 qacE_gen updated to WP_053515552.1 qacE
4143 Gene Symbol Modified: WP_063844281.1 cphA updated to WP_063844281.1 cphA3
4144 Gene Symbol Modified: WP_063854778.1 qepA updated to WP_063854778.1 qepA5
4145 Gene Symbol Modified: WP_072678505.1 blaOXA-669 updated to WP_072678505.1 blaOXA-732
4146 Gene Symbol Modified: WP_114699266.1 blaOXA-666 updated to WP_114699266.1 blaOXA-729
4147 Gene Symbol Modified: WP_116786836.1 blaOXA-667 updated to WP_116786836.1 blaOXA-730
4148 - AMR HMM library Changes:
4149 Prev. Release: 563
4150 This Release: 568
4151 Removed: 0
4152 Added: 5
4153 HMM Added: NF033692.1 APH_2pp_I_a_f_h
4154 HMM Added: NF033693.0 AAC_6p_Ie_fam
4155 HMM Added: NF033698.1 blaCSA
4156 HMM Added: NF033700.1 blaCMA
4157 HMM Added: NF033702.0 blaOXA-12_like
4158 HMM Name Modified: NF033666.1 blaOXA-664_like updated to NF033666.1 blaOXA-727_like
4159 - Protein family changes:
4160 Prev. Release: 1133
4161 This Release: 1161
4162 Removed: 0
4163 Added: 28
4164 Family Added: - aac(6')-Ie2
4165 Family Added: NF033693.0 aac(6')-Ie_fam
4166 Family Added: NF011706.2 acrB
4167 Family Added: NF007842.1 acrD
4168 Family Added: NF000314.1 adeB/adeJ
4169 Family Added: NF033692.1 aph(2'')-I_a_f_h
4170 Family Added: - aph(2'')-If2
4171 Family Added: - blaALG11
4172 Family Added: - blaALG6
4173 Family Added: NF033700.1 blaCMA
4174 Family Added: - blaCRD3
4175 Family Added: NF033698.1 blaCSA
4176 Family Added: - blaCrA
4177 Family Added: - blaDHT2
4178 Family Added: - blaEAM
4179 Family Added: - blaECM
4180 Family Added: - blaEFM
4181 Family Added: - blaELM
4182 Family Added: - blaEVM
4183 Family Added: - blaGRD23
4184 Family Added: - blaGRD33
4185 Family Added: NF033702.0 blaOXA-12_like
4186 Family Added: - blaPNGM
4187 Family Added: - blaSPN79
4188 Family Added: - catV
4189 Family Added: - crpP
4190 Family Added: - dfrA34
4191 Family Added: - qacE
4192 Family Renamed: NF033666.1 blaOXA-664_like became blaOXA-727_like
4193
4194 ---------------------------------------------------------------------
4195 Changes included in 2018-09-14.1
4196 ----------------------------------------------------------------------
4197 - Protein changes:
4198 Prev. Release: 4569
4199 This Release: 4579
4200 Removed: 0
4201 Added: 10
4202 Protein Added: WP_116786828.1 mcr-4.6
4203 Protein Added: WP_116786829.1 blaCTX-M-222
4204 Protein Added: WP_116786830.1 mcr-1.15
4205 Protein Added: WP_116786831.1 blaTEM-236
4206 Protein Added: WP_116786832.1 blaKPC-37
4207 Protein Added: WP_116786834.1 blaPDC-304
4208 Protein Added: WP_116786836.1 blaOXA-667
4209 Protein Added: WP_116786837.1 blaPDC-305
4210 Protein Added: WP_116786838.1 blaPDC-306
4211 Protein Added: WP_116786839.1 blaIMP-79
4212 - AMR HMM library Changes:
4213 Prev. Release: 563
4214 This Release: 563
4215 Removed: 0
4216 Added: 0
4217 - Protein family changes:
4218 Prev. Release: 1133
4219 This Release: 1133
4220 Removed: 0
4221 Added: 0
4222
4223 ---------------------------------------------------------------------
4224 Changes included in 2018-08-24.1
4225 ---------------------------------------------------------------------
4226 - Protein changes:
4227 Prev. Release: 4563
4228 This Release: 4569
4229 Removed: 1
4230 Added: 7
4231 Protein Removed: WP_063843217.1 catA1
4232 Protein Added: WP_003436401.1 vanR-Cd
4233 Protein Added: WP_009889012.1 vanZ1
4234 Protein Added: WP_011861275.1 vanS-Cd
4235 Protein Added: WP_011861276.1 vanG-Cd
4236 Protein Added: WP_020924773.1 blaAXC-1
4237 Protein Added: WP_072310976.1 mcr-8.2
4238 Protein Added: WP_072678505.1 blaOXA-669
4239 - AMR HMM library Changes:
4240 Prev. Release: 563
4241 This Release: 563
4242 Removed: 0
4243 Added: 0
4244 - Protein family changes:
4245 Prev. Release: 1128
4246 This Release: 1133
4247 Removed: 0
4248 Added: 5
4249 Family Added: - blaAXC
4250 Family Added: - vanG-Cd
4251 Family Added: - vanR-Cd
4252 Family Added: - vanS-Cd
4253 Family Added: - vanZ1
4254
4255 ---------------------------------------------------------------------
4256 Changes included in 2018-08-01.1
4257 ---------------------------------------------------------------------
4258 - Protein changes:
4259 Prev. Release: 4528
4260 This Release: 4563
4261 Removed: 0
4262 Added: 35
4263 Protein Added: WP_000622776.1 qacA
4264 Protein Added: WP_001159761.1 blaADC-176
4265 Protein Added: WP_001211208.1 blaADC-175
4266 Protein Added: WP_010730188.1 qacZ
4267 Protein Added: WP_013095270.1 blaCMH-4
4268 Protein Added: WP_032410229.1 blaOXA-663
4269 Protein Added: WP_033487869.1 blaACT-56
4270 Protein Added: WP_046887417.1 blaCMH-5
4271 Protein Added: WP_047052637.1 blaACT-55
4272 Protein Added: WP_050861789.1 blaACT-64
4273 Protein Added: WP_070210118.1 blaOXA-658
4274 Protein Added: WP_094935119.1 blaACT-57
4275 Protein Added: WP_111772163.1 blaVIM-58
4276 Protein Added: WP_111976052.1 blaACT-60
4277 Protein Added: WP_112017656.1 blaACT-61
4278 Protein Added: WP_112792421.1 blaACT-59
4279 Protein Added: WP_114699266.1 blaOXA-666
4280 Protein Added: WP_114699267.1 blaKPC-36
4281 Protein Added: WP_114699268.1 blaADC-174
4282 Protein Added: WP_114699269.1 blaADC-177
4283 Protein Added: WP_114699270.1 blaADC-178
4284 Protein Added: WP_114699271.1 blaADC-179
4285 Protein Added: WP_114699272.1 blaADC-180
4286 Protein Added: WP_114699273.1 blaOXA-661
4287 Protein Added: WP_114699274.1 blaOXA-662
4288 Protein Added: WP_114699275.1 mcr-8.1
4289 Protein Added: WP_114699276.1 blaOXA-659
4290 Protein Added: WP_114699277.1 blaVIM-60
4291 Protein Added: WP_114699278.1 mcr-5.3
4292 Protein Added: WP_114699279.1 blaOXA-660
4293 Protein Added: WP_114699280.1 blaIMP-76
4294 Protein Added: WP_114699281.1 blaIMP-77
4295 Protein Added: WP_114699282.1 blaIMP-78
4296 Protein Added: WP_114699283.1 blaVIM-59
4297 Protein Added: WP_114699284.1 blaCTX-M-221
4298 - AMR HMM library Changes:
4299 Prev. Release: 557
4300 This Release: 563
4301 Removed: 0
4302 Added: 6
4303 HMM Added: NF033648.1 blaOXA-274_like
4304 HMM Added: NF033666.1 blaOXA-664_like
4305 HMM Added: NF033667.0 blaOXA-55_like
4306 HMM Added: NF033669.1 polymyxin_MCR8
4307 HMM Added: NF033670.1 polymyxin_MCR6
4308 HMM Added: NF033671.1 polymyxin_MCR7
4309 - Protein family changes:
4310 Prev. Release: 1123
4311 This Release: 1128
4312 Removed: 0
4313 Added: 5
4314 Family Added: - blaOXA-266_fam
4315 Family Added: NF033648.1 blaOXA-274_like
4316 Family Added: NF033667.1 blaOXA-55_like
4317 Family Added: NF033666.1 blaOXA-664_like
4318 Family Added: NF033669.1 mcr-8
4319 HMM Added: mcr-6 updated to NF033670.1 mcr-6
4320 HMM Added: mcr-7 updated to NF033671.1 mcr-7
4321
4322 Updates in 2018-07-07.1
4323 - Fix in amr_report.cpp to remove extra field from AMRFinder output
4324
4325 Updates in 2018-06-27.1
4326 - Summary:
4327 - Protein sequences
4328 - Removed 1 protein sequence
4329 - Added 290 protein sequences
4330 - Changed the names of 2 proteins
4331 - Gene families
4332 - cfr was reorganized
4333 - HMM library
4334 - 58 HMMs not in the AMR family hierarchy were removed. They were not
4335 used for AMR gene identification so this should have no effect on
4336 AMRFinder output.
4337 - The polymyxin_MCR3 HMM was updated
4338 - Details:
4339 Protein Removed: WP_063945333.1 aac(6')-IIa
4340 Protein Added: WP_000131886.1 aac(3)-VIa
4341 Protein Added: WP_000778180.1 varG
4342 Protein Added: WP_001100752.1 blaPER-10
4343 Protein Added: WP_002812372.1 blaOXA-578
4344 Protein Added: WP_002824679.1 blaOXA-595
4345 Protein Added: WP_002837769.1 blaOXA-579
4346 Protein Added: WP_002857546.1 blaOXA-592
4347 Protein Added: WP_002889704.1 blaOXA-591
4348 Protein Added: WP_002936877.1 blaOXA-623
4349 Protein Added: WP_011339581.1 blaRHO
4350 Protein Added: WP_011497575.1 blaSHN-1
4351 Protein Added: WP_011550565.1 blaMYX-1
4352 Protein Added: WP_011638903.1 mcr-4.3
4353 Protein Added: WP_012263521.1 mupA
4354 Protein Added: WP_012541790.1 blaLEN-28
4355 Protein Added: WP_012698469.1 blaLHK-7
4356 Protein Added: WP_013255389.1 blaSPS-1
4357 Protein Added: WP_013992183.1 blaZOG-1
4358 Protein Added: WP_014206564.1 blaOXA-642
4359 Protein Added: WP_015058260.1 qnrS11
4360 Protein Added: WP_015266427.1 blaECV-1
4361 Protein Added: WP_015431537.1 blaROB-2
4362 Protein Added: WP_015818996.1 blaTTU-1
4363 Protein Added: WP_016252988.1 blaPDC-286
4364 Protein Added: WP_021018581.1 catB8
4365 Protein Added: WP_025006557.1 blaOXA-580
4366 Protein Added: WP_026025287.1 blaALI-1
4367 Protein Added: WP_031192893.1 aadA31
4368 Protein Added: WP_034035338.1 blaPDC-240
4369 Protein Added: WP_035203840.1 catA10
4370 Protein Added: WP_038333643.1 blaEBR-2
4371 Protein Added: WP_038640920.1 qnrB12
4372 Protein Added: WP_041079981.1 erm(44)v
4373 Protein Added: WP_041258349.1 blaFIA-1
4374 Protein Added: WP_041385949.1 blaSGM-2
4375 Protein Added: WP_041449074.1 blaANA-1
4376 Protein Added: WP_043774378.1 catA13
4377 Protein Added: WP_043942497.1 blaPST-1
4378 Protein Added: WP_044600959.1 blaOXA-594
4379 Protein Added: WP_044779552.1 blaOXA-638
4380 Protein Added: WP_048236419.1 qnrB85
4381 Protein Added: WP_052259183.1 erm(42)
4382 Protein Added: WP_052781249.1 blaOXA-583
4383 Protein Added: WP_052788483.1 blaOXA-611
4384 Protein Added: WP_052788887.1 blaOXA-581
4385 Protein Added: WP_052794776.1 blaOXA-625
4386 Protein Added: WP_052798312.1 blaOXA-609
4387 Protein Added: WP_052800105.1 blaOXA-597
4388 Protein Added: WP_052803794.1 blaOXA-601
4389 Protein Added: WP_052858477.1 blaOXA-637
4390 Protein Added: WP_053872444.1 blaOXA-639
4391 Protein Added: WP_053921012.1 blaOXA-603
4392 Protein Added: WP_057036510.1 blaOXA-629
4393 Protein Added: WP_058157026.1 blaPDC-271
4394 Protein Added: WP_058174497.1 blaPDC-250
4395 Protein Added: WP_058870660.1 blaOXA-651
4396 Protein Added: WP_058951457.1 blaOXA-652
4397 Protein Added: WP_061193431.1 blaPDC-298
4398 Protein Added: WP_064186845.1 qnrS13
4399 Protein Added: WP_065597326.1 blaALI-2
4400 Protein Added: WP_065801616.1 mcr-3.20
4401 Protein Added: WP_065908739.1 qnrB91
4402 Protein Added: WP_070233680.1 blaOXA-614
4403 Protein Added: WP_070698497.1 blaPDC-278
4404 Protein Added: WP_071701819.1 qnrS12
4405 Protein Added: WP_071846333.1 aac(6')_Serra
4406 Protein Added: WP_073669325.1 blaPDC-285
4407 Protein Added: WP_075606311.1 blaROB-3
4408 Protein Added: WP_078207746.1 qnrE2
4409 Protein Added: WP_078318620.1 blaROB-4
4410 Protein Added: WP_080699425.1 blaTEM-229
4411 Protein Added: WP_081048762.1 blaMYO-1
4412 Protein Added: WP_081666691.1 blaLHK-1
4413 Protein Added: WP_085843691.1 qnrB95
4414 Protein Added: WP_087696200.1 blaOXA-576
4415 Protein Added: WP_087879616.1 mcr-3.19
4416 Protein Added: WP_088303859.1 blaOXA-624
4417 Protein Added: WP_094308975.1 mcr-3.22
4418 Protein Added: WP_094312656.1 mcr-3.21
4419 Protein Added: WP_094313523.1 mcr-3.23
4420 Protein Added: WP_094321595.1 mcr-3.24
4421 Protein Added: WP_094963248.1 aadA31
4422 Protein Added: WP_096170112.1 qnrS14
4423 Protein Added: WP_096865225.1 blaPER-12
4424 Protein Added: WP_100831609.1 blaPDC-245
4425 Protein Added: WP_103034696.1 blaROB-5
4426 Protein Added: WP_103252528.1 mcr-3.25
4427 Protein Added: WP_104009831.1 blaPER-11
4428 Protein Added: WP_104009832.1 blaPDC-234
4429 Protein Added: WP_104009833.1 blaPDC-235
4430 Protein Added: WP_104009834.1 blaPDC-236
4431 Protein Added: WP_104009835.1 blaPDC-237
4432 Protein Added: WP_104009836.1 blaPDC-238
4433 Protein Added: WP_104009837.1 blaPDC-239
4434 Protein Added: WP_104009838.1 blaPDC-241
4435 Protein Added: WP_104009839.1 blaPDC-242
4436 Protein Added: WP_104009840.1 blaPDC-243
4437 Protein Added: WP_104009841.1 blaPDC-244
4438 Protein Added: WP_104009842.1 blaPDC-246
4439 Protein Added: WP_104009843.1 blaPDC-247
4440 Protein Added: WP_104009844.1 blaPDC-248
4441 Protein Added: WP_104009846.1 blaVIM-56
4442 Protein Added: WP_104009847.1 blaCTX-M-178
4443 Protein Added: WP_104009848.1 blaCTX-M-187
4444 Protein Added: WP_104009849.1 blaCMY-156
4445 Protein Added: WP_104009850.1 mcr-1.12
4446 Protein Added: WP_104009851.1 mcr-7.1
4447 Protein Added: WP_104009852.1 blaIMP-71
4448 Protein Added: WP_104009853.1 blaOXA-575
4449 Protein Added: WP_104009854.1 blaTEM-230
4450 Protein Added: WP_104009855.1 blaTEM-231
4451 Protein Added: WP_104009856.1 blaPDC-227
4452 Protein Added: WP_104009857.1 blaPDC-228
4453 Protein Added: WP_104009858.1 blaPDC-229
4454 Protein Added: WP_104009859.1 blaPDC-230
4455 Protein Added: WP_104009860.1 blaPDC-231
4456 Protein Added: WP_104009861.1 blaPDC-232
4457 Protein Added: WP_104009862.1 blaPDC-233
4458 Protein Added: WP_104531863.1 blaBUT-1
4459 Protein Added: WP_104531864.1 blaBUT-2
4460 Protein Added: WP_104531865.1 blaLHK-2
4461 Protein Added: WP_104531866.1 blaLHK-3
4462 Protein Added: WP_104531867.1 blaLHK-4
4463 Protein Added: WP_104531868.1 blaLHK-5
4464 Protein Added: WP_104531869.1 blaLHK-6
4465 Protein Added: WP_106672612.1 blaCMY-150
4466 Protein Added: WP_106924209.1 blaCTX-M-213
4467 Protein Added: WP_109544237.1 tet(S)
4468 Protein Added: WP_109545031.1 dfrA14
4469 Protein Added: WP_109545032.1 qnrB11
4470 Protein Added: WP_109545033.1 vanY-D
4471 Protein Added: WP_109545034.1 qnrB22
4472 Protein Added: WP_109545035.1 qacF
4473 Protein Added: WP_109545038.1 tet(33)
4474 Protein Added: WP_109545039.1 blaSTA-1
4475 Protein Added: WP_109545040.1 chrB
4476 Protein Added: WP_109545041.1 aph(3'')-Ib
4477 Protein Added: WP_109545042.1 blaORR-1
4478 Protein Added: WP_109545044.1 blaKPC-34
4479 Protein Added: WP_109545045.1 qnrD3
4480 Protein Added: WP_109545046.1 qnrB81
4481 Protein Added: WP_109545047.1 qnrB82
4482 Protein Added: WP_109545048.1 blaOXA-542
4483 Protein Added: WP_109545049.1 blaNDM-20
4484 Protein Added: WP_109545050.1 blaCRH-2
4485 Protein Added: WP_109545051.1 blaCRH-3
4486 Protein Added: WP_109545053.1 blaIMP-73
4487 Protein Added: WP_109545054.1 mcr-4.5
4488 Protein Added: WP_109545055.1 mcr-4.4
4489 Protein Added: WP_109545056.1 mcr-1.13
4490 Protein Added: WP_109545057.1 mcr-5.2
4491 Protein Added: WP_109545058.1 mcr-4.2
4492 Protein Added: WP_109545059.1 blaTEM-232
4493 Protein Added: WP_109545060.1 blaCTX-M-208
4494 Protein Added: WP_109545061.1 blaCTX-M-209
4495 Protein Added: WP_109545062.1 blaCTX-M-210
4496 Protein Added: WP_109545063.1 blaCTX-M-211
4497 Protein Added: WP_109545064.1 blaCTX-M-212
4498 Protein Added: WP_109545065.1 blaCMY-161
4499 Protein Added: WP_109545066.1 blaFOX-16
4500 Protein Added: WP_109545067.1 blaDHA-27
4501 Protein Added: WP_109545068.1 blaDHA-26
4502 Protein Added: WP_109545069.1 blaCTX-M-214
4503 Protein Added: WP_109545070.1 mcr-3.12
4504 Protein Added: WP_109545071.1 blaOXA-649
4505 Protein Added: WP_109545072.1 blaOXA-641
4506 Protein Added: WP_109545073.1 blaFRI-5
4507 Protein Added: WP_109545074.1 blaGPC-1
4508 Protein Added: WP_109545075.1 blaOXA-619
4509 Protein Added: WP_109545076.1 blaOXA-620
4510 Protein Added: WP_109545077.1 blaOXA-636
4511 Protein Added: WP_109545078.1 blaOXA-635
4512 Protein Added: WP_109545079.1 blaOXA-631
4513 Protein Added: WP_109545080.1 blaOXA-626
4514 Protein Added: WP_109545081.1 blaOXA-627
4515 Protein Added: WP_109545082.1 blaOXA-633
4516 Protein Added: WP_109545083.1 blaOXA-628
4517 Protein Added: WP_109545084.1 blaOXA-634
4518 Protein Added: WP_109545085.1 blaOXA-630
4519 Protein Added: WP_109545086.1 blaOXA-632
4520 Protein Added: WP_109545087.1 blaOXA-608
4521 Protein Added: WP_109545088.1 blaOXA-584
4522 Protein Added: WP_109545089.1 blaOXA-585
4523 Protein Added: WP_109545090.1 blaOXA-586
4524 Protein Added: WP_109545091.1 blaOXA-577
4525 Protein Added: WP_109545092.1 blaOXA-587
4526 Protein Added: WP_109545093.1 blaOXA-596
4527 Protein Added: WP_109545094.1 blaOXA-600
4528 Protein Added: WP_109545095.1 blaOXA-588
4529 Protein Added: WP_109545096.1 blaOXA-589
4530 Protein Added: WP_109545097.1 blaOXA-593
4531 Protein Added: WP_109545098.1 blaOXA-599
4532 Protein Added: WP_109545099.1 blaOXA-610
4533 Protein Added: WP_109545100.1 blaOXA-612
4534 Protein Added: WP_109545101.1 blaOXA-598
4535 Protein Added: WP_109545102.1 blaOXA-607
4536 Protein Added: WP_109545103.1 blaOXA-590
4537 Protein Added: WP_109545104.1 blaOXA-604
4538 Protein Added: WP_109545105.1 blaOXA-602
4539 Protein Added: WP_109545106.1 blaOXA-606
4540 Protein Added: WP_109545107.1 blaOXA-582
4541 Protein Added: WP_109545108.1 blaOXA-605
4542 Protein Added: WP_109545109.1 blaOXA-640
4543 Protein Added: WP_109545110.1 blaOXA-616
4544 Protein Added: WP_109545111.1 blaOXA-613
4545 Protein Added: WP_109545112.1 blaOXA-622
4546 Protein Added: WP_109545113.1 blaOXA-618
4547 Protein Added: WP_109545114.1 blaOXA-617
4548 Protein Added: WP_109545115.1 blaOXA-615
4549 Protein Added: WP_109545116.1 blaOXA-621
4550 Protein Added: WP_109791184.1 blaTEM-233
4551 Protein Added: WP_109791185.1 blaPDC-251
4552 Protein Added: WP_109791186.1 blaPDC-252
4553 Protein Added: WP_109791187.1 blaPDC-253
4554 Protein Added: WP_109791188.1 blaPDC-254
4555 Protein Added: WP_109791189.1 blaPDC-255
4556 Protein Added: WP_109791190.1 blaPDC-256
4557 Protein Added: WP_109791191.1 blaPDC-257
4558 Protein Added: WP_109791192.1 blaPDC-258
4559 Protein Added: WP_109791193.1 blaPDC-259
4560 Protein Added: WP_109791194.1 blaPDC-260
4561 Protein Added: WP_109791195.1 blaPDC-261
4562 Protein Added: WP_109791196.1 blaPDC-262
4563 Protein Added: WP_109791197.1 blaPDC-263
4564 Protein Added: WP_109791198.1 blaPDC-264
4565 Protein Added: WP_109791199.1 blaPDC-265
4566 Protein Added: WP_109791200.1 blaPDC-266
4567 Protein Added: WP_109791201.1 blaPDC-267
4568 Protein Added: WP_109791202.1 blaPDC-268
4569 Protein Added: WP_109791203.1 blaPDC-270
4570 Protein Added: WP_109791204.1 blaPDC-272
4571 Protein Added: WP_109791205.1 blaPDC-273
4572 Protein Added: WP_109791206.1 blaPDC-274
4573 Protein Added: WP_109791207.1 blaIMP-74
4574 Protein Added: WP_109791208.1 blaIMP-75
4575 Protein Added: WP_109791209.1 blaCTX-M-216
4576 Protein Added: WP_109791210.1 blaTEM-234
4577 Protein Added: WP_109791211.1 blaCTX-M-217
4578 Protein Added: WP_109791212.1 blaSHV-204
4579 Protein Added: WP_109791213.1 blaNDM-22
4580 Protein Added: WP_109791214.1 blaCTX-M-218
4581 Protein Added: WP_109791215.1 blaCMY-160
4582 Protein Added: WP_109791216.1 blaOXA-654
4583 Protein Added: WP_109997726.1 qnrA9
4584 Protein Added: WP_110092882.1 blaCTX-M-219
4585 Protein Added: WP_111273842.1 mcr-3.13
4586 Protein Added: WP_111273843.1 mcr-3.14
4587 Protein Added: WP_111273844.1 mcr-3.15
4588 Protein Added: WP_111273845.1 mcr-3.16
4589 Protein Added: WP_111273846.1 mcr-3.17
4590 Protein Added: WP_111273847.1 mcr-3.18
4591 Protein Added: WP_111273848.1 blaGES-35
4592 Protein Added: WP_111273849.1 blaGES-36
4593 Protein Added: WP_111273850.1 blaGES-37
4594 Protein Added: WP_111273851.1 blaCMY-162
4595 Protein Added: WP_111273852.1 blaKPC-35
4596 Protein Added: WP_111672883.1 blaPDC-275
4597 Protein Added: WP_111672884.1 blaPDC-294
4598 Protein Added: WP_111672885.1 blaPDC-295
4599 Protein Added: WP_111672886.1 blaPDC-296
4600 Protein Added: WP_111672887.1 blaPDC-297
4601 Protein Added: WP_111672888.1 blaPDC-299
4602 Protein Added: WP_111672889.1 blaPDC-300
4603 Protein Added: WP_111672890.1 blaPDC-276
4604 Protein Added: WP_111672891.1 blaPDC-277
4605 Protein Added: WP_111672892.1 blaPDC-279
4606 Protein Added: WP_111672893.1 blaPDC-280
4607 Protein Added: WP_111672894.1 blaPDC-281
4608 Protein Added: WP_111672895.1 blaPDC-282
4609 Protein Added: WP_111672896.1 blaPDC-283
4610 Protein Added: WP_111672897.1 blaPDC-284
4611 Protein Added: WP_111672898.1 blaPDC-287
4612 Protein Added: WP_111672899.1 blaPDC-288
4613 Protein Added: WP_111672900.1 blaPDC-289
4614 Protein Added: WP_111672901.1 blaPDC-290
4615 Protein Added: WP_111672902.1 blaCTX-M-220
4616 Protein Added: WP_111672903.1 blaPDC-291
4617 Protein Added: WP_111672904.1 blaPDC-292
4618 Protein Added: WP_111672905.1 blaPDC-293
4619 Protein Added: WP_111672906.1 blaCMY-163
4620 Protein Added: WP_111672907.1 blaOXA-657
4621 Protein Added: WP_111672908.1 blaPDC-301
4622 Protein Added: WP_111672909.1 blaPDC-302
4623 Protein Added: WP_111672910.1 blaPDC-303
4624 Protein Added: WP_111672911.1 blaKPC-23
4625 Protein Added: WP_111672912.1 blaNDM-23
4626 Protein Added: WP_111672913.1 blaNDM-24
4627 Protein Added: WP_111672914.1 blaVIM-57
4628 Protein Added: WP_111690897.1 cfr(B)
4629 Protein Added: WP_111690898.1 cfr(C)
4630 Protein Modified: WP_011987126.1 cfrC updated to WP_011987126.1 cfr-Cb
4631 Protein Modified: WP_063854808.1 qnrS updated to WP_063854808.1 qnrS10
4632 HMM Removed: NF000031.1 MFS_efflux_LmrA
4633 HMM Removed: NF000040.1 172051428_tet
4634 HMM Removed: NF000058.1 Erm41
4635 HMM Removed: NF000060.1 MFS_efflux_LmrB
4636 HMM Removed: NF000106.1 40850658_otr
4637 HMM Removed: NF000131.1 MATE_multi_MepA
4638 HMM Removed: NF000140.3 AAC_6p_Salmo
4639 HMM Removed: NF000217.1 MATE_multi_FepA
4640 HMM Removed: NF000247.1 MexA
4641 HMM Removed: NF000249.1 MexE
4642 HMM Removed: NF000250.1 MexH
4643 HMM Removed: NF000251.1 MexW-MexI
4644 HMM Removed: NF000252.1 MexX
4645 HMM Removed: NF000263.1 MATE_multi_NorM
4646 HMM Removed: NF000282.2 RND_permease_1
4647 HMM Removed: NF000313.1 adeA-adeI
4648 HMM Removed: NF000314.1 adeB
4649 HMM Removed: NF000315.1 adeC-adeK-oprM
4650 HMM Removed: NF000334.3 drrA
4651 HMM Removed: NF000336.1 emrE
4652 HMM Removed: NF000342.3 glpA_Cterm
4653 HMM Removed: NF000344.1 macA
4654 HMM Removed: NF000345.1 macB
4655 HMM Removed: NF000349.1 mfpA_AE000516.2
4656 HMM Removed: NF000352.1 norA
4657 HMM Removed: NF000357.1 romA
4658 HMM Removed: NF000391.1 EmrB
4659 HMM Removed: NF010314.2 PRK13751.2
4660 HMM Removed: NF012135.0 ANT_3pp_9_crypt
4661 HMM Removed: NF012144.2 ramA_TF
4662 HMM Removed: NF012163.2 BaeS_SmeS
4663 HMM Removed: NF012168.1 BlaI_of_BCL
4664 HMM Removed: NF012198.0 MarA_TF
4665 HMM Removed: NF012208.0 SDR_dihy_bifunc
4666 HMM Removed: NF012226.0 AdeS_HK
4667 HMM Removed: NF012227.0 AdeR_RR
4668 HMM Removed: NF012228.1 RobA_TF
4669 HMM Removed: NF028537.1 P_eth_NH2_trans
4670 HMM Removed: NF030466.0 TIGR02052
4671 HMM Removed: NF030467.0 TIGR02053
4672 HMM Removed: NF033086.2 penta_rpt_Qnr
4673 HMM Removed: NF033124.1 estX
4674 HMM Removed: NF033134.0 cmlA_floR
4675 HMM Removed: NF033138.1 RND-peri-MexC
4676 HMM Removed: NF033142.1 efflux_OM_AdeC
4677 HMM Removed: NF033143.1 efflux_OM_AdeK
4678 HMM Removed: NF033184.1 B3_Acin_new1
4679 HMM Removed: NF033480.1 bifunc_MprF
4680 HMM Removed: NF033553.1 MerP_Gpos
4681 HMM Removed: NF033555.1 lyase_MerB
4682 HMM Removed: NF033556.1 MerTP_fusion
4683 HMM Removed: NF033560.1 merT_RC607
4684 HMM Removed: NF033565.0 trans_MerF
4685 HMM Removed: NF033606.1 heat_AAA_ClpK
4686 HMM Removed: NF033607.0 disagg_AAA_ClpG
4687 HMM Removed: NF033617.1 RND_permease_2
4688 HMM Removed: NF033627.1 intimin_all
4689 HMM Removed: NF033636.1 acid_shock_Asr
4690 HMM Modified: NF033408.2 polymyxin_MCR3 updated to NF033408.5 polymyxin_MCR3
4691 Family Removed: - cfrC
4692 Family Added: - cfr(B)
4693 Family Added: - cfr(C)
4694 Family Added: - cfr-Cb
4695 Family Changed: NF033408.2 mcr-3 updated to NF033408.5 mcr-3
4696
4697 ---------------------------------------------------------------------
4698 Changes included in 2018-05-15.1
4699 ---------------------------------------------------------------------
4700 - Data Changes:
4701 Protein Removed: WP_010886396.1 lmr(B)
4702 HMM Added: NF033614.1 APH_6_Ic_gen
4703 HMM Added: NF033617.1 RND_permease_2
4704 HMM Added: NF033626.1 blaBKC_GPC
4705 HMM Added: NF033627.1 intimin_all
4706 HMM Added: NF033636.1 acid_shock_Asr
4707 HMM Modified: NF000011.1 APH_6_Ic updated to NF000011.2 APH_6_Ic
4708 HMM Modified: NF000221.3 FosA updated to NF000221.4 FosA
4709 HMM Modified: NF000282.1 RND_permease_1 updated to NF000282.2 RND_permease_1
4710 HMM Modified: NF000428.2 blaFRI updated to NF000428.4 blaFRI
4711 HMM Modified: NF033582.0 blaALI updated to NF033582.2 blaALI
4712 Family Removed: NF000060.1 lmr(B)
4713 Family Added: NF033626.1 blaBKC_GPC
4714 Family Added: - blaGPC
4715 - Algorithm Changes:
4716 - Partial proteins identified as "Method" PARTIAL if length of blast
4717 alignment > 50% and < 90% of database protein.
4718
4719 ---------------------------------------------------------------------
4720 Changes included in 2018-05-08.1 RELEASE CANDIDATE
4721 ---------------------------------------------------------------------
4722 - Addition of handling for genbank plasmid gff
4723
4724 ---------------------------------------------------------------------
4725 Changes included in 2018-04-16.1
4726 ---------------------------------------------------------------------
4727 - Addition of file format checking for FASTA and GFF files before AMRFinder blast and HMM searches are run
4728 - Altered format of fam.tab file to include NF accessions for families
4729 - Removal of non-reportable families from fam.tab