Mercurial > repos > curtish > bwa_tools_mini

diff tool_dependencies.xml @ 0:11eda1d95d84 draft default tip

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clone upstream
author curtish
date Mon, 26 Aug 2013 17:06:46 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Aug 26 17:06:46 2013 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bwa" version="0.5.9">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action>
+                <action type="shell_command">make</action>
+                <action type="move_file">
+                    <source>bwa</source>
+                    <destination>$INSTALL_DIR/bin</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+Compiling BWA requires zlib and libpthread to be present on your system.
+        </readme>
+    </package>
+</tool_dependency>
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