<tool id="fastq2collapse" name="Collapse exact PCR duplicates">
	<description>in FASTQ</description>
	<!--<command interpreter="perl">-->
	<command>
		fastq2collapse.pl -v  $input $output
	</command>
	<inputs>
		<param type="data" format="fastq" name="input" label="Input FASTQ file (.gz file accepted)"/>
	</inputs>

	<outputs>
		<data name="output" format="fastq" label="Collapse exact PCR duplicates on ${on_string}" />
	</outputs>

	<help>

.. class:: infomark

**What this tool does**

This tool collapses exact duplicate sequences.

It takes as input files in FASTQ format of filtered and trimmed reads and output files in FASTQ format in which exact PCR duplicates have been collapsed.




	</help>
</tool>