|
1
|
1 <tool id="fastq2collapse" name="Collapse exact PCR duplicates">
|
|
|
2 <description>in FASTQ</description>
|
|
|
3 <!--<command interpreter="perl">-->
|
|
|
4 <command>
|
|
|
5 fastq2collapse.pl -v $input $output
|
|
|
6 </command>
|
|
|
7 <inputs>
|
|
|
8 <param type="data" format="fastq" name="input" label="Input FASTQ file (.gz file accepted)"/>
|
|
|
9 </inputs>
|
|
|
10
|
|
|
11 <outputs>
|
|
|
12 <data name="output" format="fastq" label="Collapse exact PCR duplicates on ${on_string}" />
|
|
|
13 </outputs>
|
|
|
14
|
|
|
15 <help>
|
|
|
16
|
|
|
17 .. class:: infomark
|
|
|
18
|
|
|
19 **What this tool does**
|
|
|
20
|
|
|
21 This tool collapses exact duplicate sequences.
|
|
|
22
|
|
|
23 It takes as input files in FASTQ format of filtered and trimmed reads and output files in FASTQ format in which exact PCR duplicates have been collapsed.
|
|
|
24
|
|
|
25
|
|
|
26
|
|
|
27
|
|
|
28 </help>
|
|
|
29 </tool>
|
|
|
30
|
