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annotate tool_dependencies.xml @ 5:73f082e9fa2d

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Set of improvements and fixes from Nicola Soranzo changeset: 9:c3dae016a3eb files: metaphlan.xml description: Update citation changeset: 8:f58b66b4e5fc files: metaphlan.xml description: Add select lists for -t and --tax_lev options Also some small fixes changeset: 7:94a2b29778b7 files: metaphlan_to_phyloxml.xml description: Clarify that only result of rel_ab analysis is accepted as input changeset: 6:b0eba028dee8 files: metaphlan.xml metaphlan_to_phyloxml.xml description: Fix whitespaces changeset: 5:4340075c8a93 files: tool_dependencies.xml description: Correct metaphlan clone URL to avoid a redirect changed metaphlan.xml changed metaphlan_to_phyloxml.xml changed tool_dependencies.xml
author nsegata
date Sun, 23 Dec 2012 18:46:23 +0100
parents 80b22b31633f
children
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80b22b31633f Updated for MetaPhlAn v1.7 and tool_dependencies added for auto install
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="metaphlan" version="1.7.0">
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4 <install version="1.0">
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5 <actions>
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73f082e9fa2d Set of improvements and fixes from Nicola Soranzo
nsegata
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6 <action type="shell_command">hg clone https://bitbucket.org/nsegata/metaphlan</action>
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7 <action type="move_directory_files">
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8 <source_directory>.</source_directory>
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9 <destination_directory>$INSTALL_DIR</destination_directory>
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10 </action>
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11 <action type="set_environment">
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12 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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13 </action>
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14 <action type="set_environment">
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15 <environment_variable name="METAPHLAN_PATH" action="set_to">$INSTALL_DIR</environment_variable>
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16 </action>
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18 </actions>
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19 </install>
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20 <readme>
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21 These links provide information for the metaphlan package:
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22 http://huttenhower.sph.harvard.edu/metaphlan
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23 https://groups.google.com/forum/#!forum/metaphlan-users
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24 </readme>
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25 </package>
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26 </tool_dependency>
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