Mercurial > repos > david-hoover > mirdeep2_and_targetspy_dh
view bowtie_build.xml @ 0:17e442abb3de draft default tip
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author | david-hoover |
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date | Wed, 23 Jul 2014 10:27:07 -0400 |
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<tool id="bowtiebuild" name="Bowtie Indexing"> <description>Build index for Bowtie alignment</description> <requirements> <requirement type="perl-module">bowtie_build_wrapper.pl</requirement> </requirements> <command interpreter="perl"> ./bowtie_build_wrapper.pl $fastafile "$output.files_path" $output "$fastafile.name" </command> <inputs> <param format="fasta" name="fastafile" type="data" optional="false" label="Fasta reference file" help="Reference file in fasta format"/> </inputs> <outputs> <data format="bowtie_html_index" name="output"/> </outputs> <help> </help> </tool>