Mercurial > repos > david-hoover > mirdeep2_and_targetspy_dh
annotate bowtie_build.xml @ 0:17e442abb3de draft default tip
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| author | david-hoover |
|---|---|
| date | Wed, 23 Jul 2014 10:27:07 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 <tool id="bowtiebuild" name="Bowtie Indexing"> |
| 2 <description>Build index for Bowtie alignment</description> | |
| 3 | |
| 4 <requirements> | |
| 5 <requirement type="perl-module">bowtie_build_wrapper.pl</requirement> | |
| 6 </requirements> | |
| 7 | |
| 8 <command interpreter="perl"> | |
| 9 ./bowtie_build_wrapper.pl $fastafile "$output.files_path" $output "$fastafile.name" | |
| 10 </command> | |
| 11 | |
| 12 <inputs> | |
| 13 <param format="fasta" name="fastafile" type="data" optional="false" label="Fasta reference file" help="Reference file in fasta format"/> | |
| 14 </inputs> | |
| 15 | |
| 16 <outputs> | |
| 17 <data format="bowtie_html_index" name="output"/> | |
| 18 </outputs> | |
| 19 | |
| 20 <help> | |
| 21 </help> | |
| 22 </tool> |