|
0
|
1 Metadata-Version: 1.0
|
|
|
2 Name: weblogo
|
|
|
3 Version: 3.0
|
|
|
4 Summary: WebLogo3 : Sequence Logos Redrawn
|
|
|
5 Home-page: http://code.google.com/p/weblogo/
|
|
|
6 Author: Gavin Crooks
|
|
|
7 Author-email: gec@threeplusone.com
|
|
|
8 License: UNKNOWN
|
|
|
9 Download-URL: http://weblogo.googlecode.com/svn/dist/weblogo-3.0.tar.gz
|
|
|
10 Description:
|
|
|
11 WebLogo (http://code.google.com/p/weblogo/) is a tool for creating sequence
|
|
|
12 logos from biological sequence alignments. It can be run on the command line,
|
|
|
13 as a standalone webserver, as a CGI webapp, or as a python library.
|
|
|
14
|
|
|
15 The main WebLogo webserver is located at http://bespoke.lbl.gov/weblogo/
|
|
|
16
|
|
|
17 Please consult the manual for installation instructions and more information:
|
|
|
18 (Also located in the weblogolib/htdocs subdirectory.)
|
|
|
19
|
|
|
20 http://bespoke.lbl.gov/weblogo/manual.html
|
|
|
21
|
|
|
22 For help on the command line interface run
|
|
|
23 ./weblogo --help
|
|
|
24
|
|
|
25 To build a simple logo run
|
|
|
26 ./weblogo < cap.fa > logo0.eps
|
|
|
27
|
|
|
28 To run as a standalone webserver at localhost:8080
|
|
|
29 ./weblogo --server
|
|
|
30
|
|
|
31 To create a logo in python code:
|
|
|
32 >>> from weblogolib import *
|
|
|
33 >>> fin = open('cap.fa')
|
|
|
34 >>> seqs = read_seq_data(fin)
|
|
|
35 >>> data = LogoData.from_seqs(seqs)
|
|
|
36 >>> options = LogoOptions()
|
|
|
37 >>> options.title = "A Logo Title"
|
|
|
38 >>> format = LogoFormat(data, options)
|
|
|
39 >>> fout = open('cap.eps', 'w')
|
|
|
40 >>> eps_formatter( data, format, fout)
|
|
|
41
|
|
|
42
|
|
|
43 -- Distribution and Modification --
|
|
|
44 This package is distributed under the new BSD Open Source License.
|
|
|
45 Please see the LICENSE.txt file for details on copyright and licensing.
|
|
|
46 The WebLogo source code can be downloaded from
|
|
|
47 http://code.google.com/p/weblogo/
|
|
|
48
|
|
|
49 WebLogo requires Python 2.3, 2.4 or 2.5, the corebio python toolkit for
|
|
|
50 computational biology (http://code.google.com/p/corebio), and the python
|
|
|
51 array package 'numpy' (http://www.scipy.org/Download)
|
|
|
52
|
|
|
53 Platform: UNKNOWN
|
|
|
54 Classifier: Development Status :: 5 - Production/Stable
|
|
|
55 Classifier: Intended Audience :: Science/Research
|
|
|
56 Classifier: License :: OSI Approved :: BSD License
|
|
|
57 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
|
|
|
58 Classifier: Programming Language :: Python
|
|
|
59 Classifier: Natural Language :: English
|
|
|
60 Classifier: Operating System :: OS Independent
|
|
|
61 Classifier: Topic :: Software Development :: Libraries
|
|
|
62 Classifier: Topic :: Software Development :: Libraries :: Python Modules
|
