Mercurial > repos > davidmurphy > codonlogo
diff PKG-INFO @ 0:c55bdc2fb9fa
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author | davidmurphy |
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date | Thu, 27 Oct 2011 12:09:09 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PKG-INFO Thu Oct 27 12:09:09 2011 -0400 @@ -0,0 +1,62 @@ +Metadata-Version: 1.0 +Name: weblogo +Version: 3.0 +Summary: WebLogo3 : Sequence Logos Redrawn +Home-page: http://code.google.com/p/weblogo/ +Author: Gavin Crooks +Author-email: gec@threeplusone.com +License: UNKNOWN +Download-URL: http://weblogo.googlecode.com/svn/dist/weblogo-3.0.tar.gz +Description: + WebLogo (http://code.google.com/p/weblogo/) is a tool for creating sequence + logos from biological sequence alignments. It can be run on the command line, + as a standalone webserver, as a CGI webapp, or as a python library. + + The main WebLogo webserver is located at http://bespoke.lbl.gov/weblogo/ + + Please consult the manual for installation instructions and more information: + (Also located in the weblogolib/htdocs subdirectory.) + + http://bespoke.lbl.gov/weblogo/manual.html + + For help on the command line interface run + ./weblogo --help + + To build a simple logo run + ./weblogo < cap.fa > logo0.eps + + To run as a standalone webserver at localhost:8080 + ./weblogo --server + + To create a logo in python code: + >>> from weblogolib import * + >>> fin = open('cap.fa') + >>> seqs = read_seq_data(fin) + >>> data = LogoData.from_seqs(seqs) + >>> options = LogoOptions() + >>> options.title = "A Logo Title" + >>> format = LogoFormat(data, options) + >>> fout = open('cap.eps', 'w') + >>> eps_formatter( data, format, fout) + + + -- Distribution and Modification -- + This package is distributed under the new BSD Open Source License. + Please see the LICENSE.txt file for details on copyright and licensing. + The WebLogo source code can be downloaded from + http://code.google.com/p/weblogo/ + + WebLogo requires Python 2.3, 2.4 or 2.5, the corebio python toolkit for + computational biology (http://code.google.com/p/corebio), and the python + array package 'numpy' (http://www.scipy.org/Download) + +Platform: UNKNOWN +Classifier: Development Status :: 5 - Production/Stable +Classifier: Intended Audience :: Science/Research +Classifier: License :: OSI Approved :: BSD License +Classifier: Topic :: Scientific/Engineering :: Bio-Informatics +Classifier: Programming Language :: Python +Classifier: Natural Language :: English +Classifier: Operating System :: OS Independent +Classifier: Topic :: Software Development :: Libraries +Classifier: Topic :: Software Development :: Libraries :: Python Modules