Mercurial > repos > davidvanzessen > argalaxy_tools

annotate create_container_hash.py @ 57:33412e85e669 draft

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"planemo upload commit 2a9ed3adf321f18047c3746735a5e79a4586798d"
author rhpvorderman
date Wed, 02 Feb 2022 10:50:01 +0000
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33412e85e669 "planemo upload commit 2a9ed3adf321f18047c3746735a5e79a4586798d"
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1 #!/usr/bin/env python3
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2
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3 import sys
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4
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5 from xml.etree import ElementTree
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6 from xml.etree.ElementTree import Element
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7
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8 DEFAULT_BASE_IMAGE = "bgruening/busybox-bash:latest"
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9 def main():
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10 try:
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11 base_image = sys.argv[1]
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12 except IndexError:
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13 base_image = DEFAULT_BASE_IMAGE
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14 tool = ElementTree.parse("complete_immunerepertoire.xml").getroot()
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15 requirements: Element = tool.find("requirements")
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16 packages = []
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17 for req in requirements.findall("requirement"):
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18 if req.get("type") == "package":
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19 name = req.text
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20 version = req.get("version")
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21 package_string = f"{name}={version}"
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22 packages.append(package_string)
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23 with open("container_hash.tsv", mode="wt") as container_hash_file:
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24 container_hash_file.write("#targets\tbase_image\timage_build\n")
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25 container_hash_file.write(",".join(packages) + f"\t{base_image}\t0\n")
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28 if __name__ == "__main__":
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29 main()