Mercurial > repos > davidvanzessen > argalaxy_tools
annotate report_clonality/naive_gene_freq.htm @ 54:81b3eb11ed2c draft
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
author | rhpvorderman |
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date | Tue, 16 Nov 2021 15:42:32 +0000 |
parents | 124b7fd92a3e |
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1 <html xmlns:v="urn:schemas-microsoft-com:vml" |
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2 xmlns:o="urn:schemas-microsoft-com:office:office" |
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3 xmlns:w="urn:schemas-microsoft-com:office:word" |
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4 xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" |
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5 xmlns="http://www.w3.org/TR/REC-html40"> |
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7 <head> |
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8 <meta http-equiv=Content-Type content="text/html; charset=windows-1252"> |
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9 <meta name=ProgId content=Word.Document> |
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10 <meta name=Generator content="Microsoft Word 14"> |
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11 <meta name=Originator content="Microsoft Word 14"> |
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12 <link rel=File-List href="Gene%20frequencies%20tab_files/filelist.xml"> |
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13 <link rel=themeData href="Gene%20frequencies%20tab_files/themedata.thmx"> |
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14 <style> |
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15 <!-- |
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16 /* Font Definitions */ |
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97 {page:WordSection1;} |
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98 --> |
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99 </style> |
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100 <!--[if gte mso 10]> |
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101 <style> |
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102 /* Style Definitions */ |
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103 table.MsoNormalTable |
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104 {mso-style-name:"Table Normal"; |
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105 mso-tstyle-rowband-size:0; |
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106 mso-tstyle-colband-size:0; |
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107 mso-style-noshow:yes; |
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108 mso-style-priority:99; |
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109 mso-style-parent:""; |
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110 mso-padding-alt:0in 5.4pt 0in 5.4pt; |
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111 mso-para-margin-top:0in; |
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112 mso-para-margin-right:0in; |
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113 mso-para-margin-bottom:10.0pt; |
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114 mso-para-margin-left:0in; |
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115 line-height:115%; |
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116 mso-pagination:widow-orphan; |
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117 font-size:10.0pt; |
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118 font-family:"Calibri","sans-serif";} |
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119 </style> |
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120 <![endif]--><!--[if gte mso 9]><xml> |
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121 <o:shapedefaults v:ext="edit" spidmax="1026"/> |
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122 </xml><![endif]--><!--[if gte mso 9]><xml> |
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123 <o:shapelayout v:ext="edit"> |
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124 <o:idmap v:ext="edit" data="1"/> |
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125 </o:shapelayout></xml><![endif]--> |
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126 </head> |
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127 |
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128 <body lang=EN-US style='tab-interval:.5in'> |
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129 |
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130 <div class=WordSection1> |
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131 |
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132 <p class=MsoNoSpacing style='text-align:justify'><b><u><span lang=EN-GB |
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133 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language: |
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134 EN-GB'>Gene frequencies tab</span></u></b></p> |
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135 |
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136 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: |
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137 justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; |
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138 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>This tab gives |
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139 information on the frequency of V, D and J gene usage. <o:p></o:p></span></p> |
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140 |
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141 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: |
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142 justify;line-height:normal'><o:p> </o:p></p> |
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143 |
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144 <p class=MsoNoSpacing style='text-align:justify'><b><span lang=EN-GB |
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145 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language: |
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146 EN-GB'>Graphs</span></b></p> |
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147 |
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148 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: |
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149 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; |
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150 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Distribution of |
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151 V gene families<o:p></o:p></span></u></p> |
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152 |
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153 <p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK121"></a><a |
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154 name="OLE_LINK123"></a><a name="OLE_LINK122"></a><span style='mso-bookmark: |
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155 OLE_LINK121'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"; |
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156 mso-ansi-language:EN-GB'>Bar graph showing the frequency of V gene family usage |
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157 in all uploaded donors. </span></span><span lang=EN-GB style='font-size:12.0pt; |
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158 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'><o:p></o:p></span></p> |
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159 |
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160 <p class=MsoNoSpacing style='text-align:justify'><o:p> </o:p></p> |
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161 |
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162 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: |
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163 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; |
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164 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative |
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165 frequency of V gene usage<o:p></o:p></span></u></p> |
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166 |
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167 <p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK124"></a><a |
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168 name="OLE_LINK126"></a><a name="OLE_LINK125"></a><span style='mso-bookmark: |
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169 OLE_LINK124'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"; |
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170 mso-ansi-language:EN-GB'>Bar graph showing the frequency of V genes in all |
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171 uploaded donors. The order of the V genes on the x-axis can be altered by |
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172 altering the “<span style='color:black;background:white'>Order of V(D)J genes |
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173 in graphs” filter on the main page of the Immune repertoire pipeline.</span></span></span><span |
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174 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"; |
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175 color:black;background:white;mso-ansi-language:EN-GB'><o:p></o:p></span></p> |
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176 |
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177 <p class=MsoNoSpacing style='text-align:justify'><o:p> </o:p></p> |
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178 |
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179 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: |
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180 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; |
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181 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative |
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182 frequency of D gene usage<o:p></o:p></span></u></p> |
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183 |
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184 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB |
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185 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language: |
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186 EN-GB'>Bar graph showing the frequency of D genes in all uploaded donors. The |
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187 order of the D genes on the x-axis can be altered by altering the “<span |
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188 style='color:black;background:white'>Order of V(D)J genes in graphs” filter on |
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189 the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p> |
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190 |
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191 <p class=MsoNoSpacing style='text-align:justify'><o:p> </o:p></p> |
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192 |
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193 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: |
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194 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; |
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195 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative |
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196 frequency of J gene usage<o:p></o:p></span></u></p> |
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197 |
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198 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB |
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199 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language: |
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200 EN-GB'>Bar graph showing the frequency of J genes in all uploaded donors. The |
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201 order of the J genes on the x-axis can be altered by altering the “<span |
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202 style='color:black;background:white'>Order of V(D)J genes in graphs” filter on |
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203 the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p> |
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204 |
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205 <p class=MsoNoSpacing style='text-align:justify'><o:p> </o:p></p> |
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206 |
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207 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: |
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208 justify;line-height:normal'><u><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'>D |
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209 reading frame<o:p></o:p></span></u></p> |
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210 |
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211 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB |
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212 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language: |
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213 EN-GB'>Bar graph visualizing the frequency by which each D reading frame is |
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214 used in each donor.</span></p> |
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215 |
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216 </div> |
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217 |
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218 </body> |
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219 |
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220 </html> |