Mercurial > repos > davidvanzessen > argalaxy_tools

annotate report_clonality/naive_clonality.htm @ 58:4c6df851e262 draft default tip

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"planemo upload commit 1a7731bb4fe2e80fb1fdc88121783068af3edb08"
author rhpvorderman
date Fri, 21 Apr 2023 10:04:39 +0000
parents 81b3eb11ed2c
children
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1 <html>
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3 <head>
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4 <meta http-equiv=Content-Type content="text/html; charset=UTF-8">
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5 <meta name=Generator content="Microsoft Word 14 (filtered)">
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6 <style>
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7 <!--
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8 /* Font Definitions */
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9 @font-face
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10 {font-family:Calibri;
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11 panose-1:2 15 5 2 2 2 4 3 2 4;}
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12 /* Style Definitions */
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13 p.MsoNormal, li.MsoNormal, div.MsoNormal
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14 {margin-top:0in;
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15 margin-right:0in;
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16 margin-bottom:10.0pt;
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17 margin-left:0in;
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18 line-height:115%;
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19 font-size:11.0pt;
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20 font-family:"Calibri","sans-serif";}
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21 p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
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22 {margin:0in;
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23 margin-bottom:.0001pt;
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24 font-size:11.0pt;
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25 font-family:"Calibri","sans-serif";}
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26 .MsoChpDefault
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27 {font-family:"Calibri","sans-serif";}
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28 .MsoPapDefault
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29 {margin-bottom:10.0pt;
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30 line-height:115%;}
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31 @page WordSection1
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32 {size:8.5in 11.0in;
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33 margin:1.0in 1.0in 1.0in 1.0in;}
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34 div.WordSection1
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35 {page:WordSection1;}
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36 -->
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37 </style>
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38
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39 </head>
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40
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41 <body lang=EN-US>
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43 <div class=WordSection1>
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45 <p class=MsoNoSpacingCxSpFirst style='text-align:justify'><span
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46 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each donor a
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47 subtab is provided containing information on the sequence overlap between
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48 replicates of the different replicates of one donor. Dependent on the settings
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49 of the Shared clonal types / clonality filter a clonality score is given.  The clonality
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50 score  is calculated according to the formula described by </span><a
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51 name="OLE_LINK13"></a><a name="OLE_LINK12"></a><a name="OLE_LINK11"><span
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52 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Boyd
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53 et al, PMID: 20161664. </span></a></p>
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55 <p class=MsoNoSpacingCxSpLast style='text-align:justify'><span lang=EN-GB
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56 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each
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57 individual replicate the number of reads is reported. In addition, the number
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58 of coincidences between the different replicates of the same donor are reported.
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59 </span></p>
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60
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61 <p class=MsoNormal>&nbsp;</p>
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62
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63 </div>
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64
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65 </body>
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67 </html>