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planemo upload commit 93519df849f317f4a8fc6167a48a4ee06e6aeff8
author rhpvorderman
date Wed, 30 Apr 2025 12:44:38 +0000
parents 4c6df851e262
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <html>
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3 <head>
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4 <meta http-equiv=Content-Type content="text/html; charset=UTF-8">
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5 <meta name=ProgId content=Word.Document>
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6 <meta name=Generator content="Microsoft Word 14">
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7 <meta name=Originator content="Microsoft Word 14">
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8 <link rel=File-List href="Junction%20analysis%20tab_files/filelist.xml">
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9 <link rel=themeData href="Junction%20analysis%20tab_files/themedata.thmx">
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10 <style>
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11 <!--
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12 /* Font Definitions */
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13 @font-face
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14 {font-family:Calibri;
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15 panose-1:2 15 5 2 2 2 4 3 2 4;
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16 mso-font-charset:0;
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17 mso-generic-font-family:swiss;
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18 mso-font-pitch:variable;
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19 mso-font-signature:-536870145 1073786111 1 0 415 0;}
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20 /* Style Definitions */
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21 p.MsoNormal, li.MsoNormal, div.MsoNormal
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22 {mso-style-unhide:no;
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23 mso-style-qformat:yes;
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24 mso-style-parent:"";
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25 margin-top:0in;
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27 margin-bottom:10.0pt;
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29 line-height:115%;
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30 mso-pagination:widow-orphan;
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31 font-size:11.0pt;
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32 font-family:"Calibri","sans-serif";
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33 mso-fareast-font-family:"Times New Roman";
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34 mso-fareast-theme-font:minor-fareast;
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35 mso-bidi-font-family:"Times New Roman";}
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36 p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
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37 {mso-style-priority:1;
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38 mso-style-unhide:no;
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39 mso-style-qformat:yes;
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40 margin:0in;
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42 mso-pagination:widow-orphan;
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43 font-size:11.0pt;
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44 font-family:"Calibri","sans-serif";
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45 mso-fareast-font-family:"Times New Roman";
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46 mso-fareast-theme-font:minor-fareast;
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47 mso-bidi-font-family:"Times New Roman";}
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48 p.msochpdefault, li.msochpdefault, div.msochpdefault
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49 {mso-style-name:msochpdefault;
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50 mso-style-unhide:no;
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51 mso-margin-top-alt:auto;
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53 mso-margin-bottom-alt:auto;
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55 mso-pagination:widow-orphan;
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56 font-size:12.0pt;
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57 font-family:"Calibri","sans-serif";
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58 mso-fareast-font-family:"Times New Roman";
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59 mso-fareast-theme-font:minor-fareast;
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60 mso-bidi-font-family:"Times New Roman";}
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61 p.msopapdefault, li.msopapdefault, div.msopapdefault
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62 {mso-style-name:msopapdefault;
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63 mso-style-unhide:no;
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66 margin-bottom:10.0pt;
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68 line-height:115%;
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69 mso-pagination:widow-orphan;
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70 font-size:12.0pt;
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71 font-family:"Times New Roman","serif";
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73 mso-fareast-theme-font:minor-fareast;}
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74 span.GramE
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75 {mso-style-name:"";
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76 mso-gram-e:yes;}
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77 .MsoChpDefault
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78 {mso-style-type:export-only;
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83 font-family:"Calibri","sans-serif";
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84 mso-ascii-font-family:Calibri;
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85 mso-hansi-font-family:Calibri;}
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86 .MsoPapDefault
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87 {mso-style-type:export-only;
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90 @page WordSection1
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91 {size:8.5in 11.0in;
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96 div.WordSection1
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97 {page:WordSection1;}
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98 -->
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99 </style>
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100 <!--[if gte mso 10]>
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101 <style>
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102 /* Style Definitions */
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103 table.MsoNormalTable
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104 {mso-style-name:"Table Normal";
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112 mso-para-margin-right:0in;
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113 mso-para-margin-bottom:10.0pt;
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114 mso-para-margin-left:0in;
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115 line-height:115%;
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116 mso-pagination:widow-orphan;
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117 font-size:10.0pt;
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118 font-family:"Calibri","sans-serif";}
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119 </style>
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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120 <![endif]--><!--[if gte mso 9]><xml>
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121 <o:shapedefaults v:ext="edit" spidmax="1026"/>
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122 </xml><![endif]--><!--[if gte mso 9]><xml>
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123 <o:shapelayout v:ext="edit">
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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124 <o:idmap v:ext="edit" data="1"/>
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125 </o:shapelayout></xml><![endif]-->
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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126 </head>
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127
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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128 <body lang=EN-US style='tab-interval:.5in'>
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129
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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130 <div class=WordSection1>
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131
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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132 <p class=MsoNormal style='text-align:justify'><b><u><span style='font-size:
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133 12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Junction
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134 analysis tab </span></u></b></p>
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135
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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136 <p class=MsoNormal style='text-align:justify'><b><span style='font-size:12.0pt;
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137 line-height:115%;font-family:"Times New Roman","serif"'>Tables:</span></b></p>
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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138
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
rhpvorderman
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139 <p class=MsoNormal style='text-align:justify'><span style='font-size:12.0pt;
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140 line-height:115%;font-family:"Times New Roman","serif"'>The unique
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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141 rearrangements are separated in sequences that contain <span class=GramE>both a</span>
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142 V, D and J gene and sequences that contain only a V and J gene.</span></p>
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143
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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144 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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145 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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146 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive mean
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147 tables<o:p></o:p></span></u></p>
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148
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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149 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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150 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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151 for each donor the number of productive sequences and the mean number of
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152 deletions, N-nucleotides and P-nucleotides.</span></span><span
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153 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
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154 For explanation about the different deletions and N and P nucleotides see
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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155 figure above. </span></p>
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156
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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157 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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158 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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159 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
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160 mean table<o:p></o:p></span></u></p>
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161
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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162 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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163 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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164 for each donor the number of unproductive sequences and the mean number of
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165 deletions, N-nucleotides and P-nucleotides.</span></span><span
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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166 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
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167 For explanation about the different deletions and N and P nucleotides see
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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168 figure above. </span></p>
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169
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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170 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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171 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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172 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive
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173 median table<o:p></o:p></span></u></p>
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174
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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175 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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176 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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177 for each donor the number of productive sequences and the median number of
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178 deletions, N-nucleotides and P-nucleotides.</span></span><span
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179 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
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180 For explanation about the different deletions and N and P nucleotides see
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181 figure above. </span></p>
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182
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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183 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
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184 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
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185 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
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186 median table<o:p></o:p></span></u></p>
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187
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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188 <p class=MsoNormal style='text-align:justify'><span class=GramE><span
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189 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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190 for each donor the number of unproductive sequences and the median number of
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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191 deletions, N-nucleotides and P-nucleotides.</span></span><span
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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192 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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193 For explanation about the different deletions and N and P nucleotides see
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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194 figure above. </span></p>
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195
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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196 <p class=MsoNormal>&nbsp;</p>
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197
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198 </div>
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199
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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200 </body>
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201
81b3eb11ed2c "planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
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202 </html>