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comparison complete.sh @ 7:54f6756bacb1 draft

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Uploaded
author davidvanzessen
date Fri, 16 Dec 2016 09:01:40 -0500
parents afe85eb6572e
children d5d203d38c8a
comparison
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6:d001d0c05dbe 7:54f6756bacb1
44 echo "<tr><td>Sample $count of patient $id is an archive file, using IMGT Loader</td></tr>" >> $html 44 echo "<tr><td>Sample $count of patient $id is an archive file, using IMGT Loader</td></tr>" >> $html
45 fileName=$(basename $current) 45 fileName=$(basename $current)
46 bash ${dir}/imgt_loader/imgt_loader.sh $current $parsedFileName "${fileName}" 46 bash ${dir}/imgt_loader/imgt_loader.sh $current $parsedFileName "${fileName}"
47 else 47 else
48 echo "<tr><td>Sample $count of patient $id is not a zip file so assuming fasta/fastq, using igBLASTn</td></tr>" >> $html 48 echo "<tr><td>Sample $count of patient $id is not a zip file so assuming fasta/fastq, using igBLASTn</td></tr>" >> $html
49 bash ${dir}/igblast/igblast.sh $current $species $locus $parsedFileName 49 bash ${dir}/igblast/igblast.sh $current "$species" $locus $parsedFileName
50 fi 50 fi
51 mergerInput+=($parsedFileName) 51 mergerInput+=($parsedFileName)
52 count=$((count+1)) 52 count=$((count+1))
53 done 53 done
54 54