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comparison report_clonality/naive_gene_freq.htm @ 27:b539aeb75980 draft

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author davidvanzessen
date Tue, 28 Feb 2017 08:10:34 -0500
parents 5d11c9139a55
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26:28fbbdfd7a87 27:b539aeb75980
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41 <body lang=EN-US> 128 <body lang=EN-US style='tab-interval:.5in'>
42 129
43 <div class=WordSection1> 130 <div class=WordSection1>
44 131
132 <p class=MsoNoSpacing style='text-align:justify'><b><u><span lang=EN-GB
133 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
134 EN-GB'>Gene frequencies tab</span></u></b></p>
135
45 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: 136 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
46 justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; 137 justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt;
47 font-family:"Times New Roman","serif"'>This tab gives information on the 138 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>This tab gives
48 frequency of V, D and J gene usage. </span></p> 139 information on the frequency of V, D and J gene usage. <o:p></o:p></span></p>
49 140
50 <p class=MsoNoSpacingCxSpMiddle style='text-align:justify'><b><span lang=EN-GB 141 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
51 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Graphs</span></b></p> 142 justify;line-height:normal'><o:p>&nbsp;</o:p></p>
52 143
53 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt; 144 <p class=MsoNoSpacing style='text-align:justify'><b><span lang=EN-GB
54 text-align:justify;line-height:normal'><u><span lang=EN-GB style='font-size: 145 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
55 12.0pt;font-family:"Times New Roman","serif"'>Distribution of V gene families</span></u></p> 146 EN-GB'>Graphs</span></b></p>
56 147
57 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 148 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
58 text-align:justify;line-height:normal'><a name="OLE_LINK123"></a><a 149 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
59 name="OLE_LINK122"></a><a name="OLE_LINK121"><span lang=EN-GB style='font-size: 150 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Distribution of
60 12.0pt;font-family:"Times New Roman","serif"'>Bar graph showing the frequency 151 V gene families<o:p></o:p></span></u></p>
61 of V gene family usage in all uploaded donors. </span></a></p> 152
62 153 <p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK121"></a><a
63 <p class=MsoNormalCxSpMiddle style='margin-bottom:0in;margin-bottom:.0001pt; 154 name="OLE_LINK123"></a><a name="OLE_LINK122"></a><span style='mso-bookmark:
64 text-align:justify;line-height:normal'><u><span lang=EN-GB style='font-size: 155 OLE_LINK121'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
65 12.0pt;font-family:"Times New Roman","serif"'>Relative frequency of V gene 156 mso-ansi-language:EN-GB'>Bar graph showing the frequency of V gene family usage
66 usage</span></u></p> 157 in all uploaded donors. </span></span><span lang=EN-GB style='font-size:12.0pt;
67 158 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'><o:p></o:p></span></p>
68 <p class=MsoNormalCxSpLast style='margin-bottom:0in;margin-bottom:.0001pt; 159
69 text-align:justify;line-height:normal'><a name="OLE_LINK126"></a><a 160 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
70 name="OLE_LINK125"></a><a name="OLE_LINK124"><span lang=EN-GB style='font-size: 161
71 12.0pt;font-family:"Times New Roman","serif"'>Bar graph showing the frequency 162 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
72 of V genes in all uploaded donors. The order of the V genes on the x-axis can 163 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
73 be altered by altering the “<span style='color:black;background:white'>Order of 164 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
74 V(D)J genes in graphs” filter on the main page of the Immune repertoire 165 frequency of V gene usage<o:p></o:p></span></u></p>
75 pipeline.</span></span></a></p> 166
76 167 <p class=MsoNoSpacing style='text-align:justify'><a name="OLE_LINK124"></a><a
77 <p class=MsoNoSpacingCxSpLast style='text-align:justify'><a name="OLE_LINK129"></a><a 168 name="OLE_LINK126"></a><a name="OLE_LINK125"></a><span style='mso-bookmark:
78 name="OLE_LINK128"></a><a name="OLE_LINK127"><u><span lang=EN-GB 169 OLE_LINK124'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
79 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Relative 170 mso-ansi-language:EN-GB'>Bar graph showing the frequency of V genes in all
80 frequency of D gene usage</span></u></a></p> 171 uploaded donors. The order of the V genes on the x-axis can be altered by
81 172 altering the “<span style='color:black;background:white'>Order of V(D)J genes
82 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt; 173 in graphs” filter on the main page of the Immune repertoire pipeline.</span></span></span><span
83 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; 174 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif";
84 font-family:"Times New Roman","serif"'>Bar graph showing the frequency of D 175 color:black;background:white;mso-ansi-language:EN-GB'><o:p></o:p></span></p>
85 genes in all uploaded donors. The order of the D genes on the x-axis can be 176
86 altered by altering the “<span style='color:black;background:white'>Order of 177 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
87 V(D)J genes in graphs” filter on the main page of the Immune repertoire 178
88 pipeline.</span></span></p> 179 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
89 180 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
90 <p class=MsoNoSpacing style='text-align:justify'><u><span lang=EN-GB 181 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
91 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Relative 182 frequency of D gene usage<o:p></o:p></span></u></p>
92 frequency of J gene usage</span></u></p> 183
93 184 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
94 <p class=MsoNormalCxSpFirst style='margin-bottom:0in;margin-bottom:.0001pt; 185 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
95 text-align:justify;line-height:normal'><span lang=EN-GB style='font-size:12.0pt; 186 EN-GB'>Bar graph showing the frequency of D genes in all uploaded donors. The
96 font-family:"Times New Roman","serif"'>Bar graph showing the frequency of J 187 order of the D genes on the x-axis can be altered by altering the “<span
97 genes in all uploaded donors. The order of the J genes on the x-axis can be 188 style='color:black;background:white'>Order of V(D)J genes in graphs” filter on
98 altered by altering the “<span style='color:black;background:white'>Order of 189 the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p>
99 V(D)J genes in graphs” filter on the main page of the Immune repertoire 190
100 pipeline.</span></span></p> 191 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
192
193 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
194 justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
195 font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Relative
196 frequency of J gene usage<o:p></o:p></span></u></p>
197
198 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
199 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
200 EN-GB'>Bar graph showing the frequency of J genes in all uploaded donors. The
201 order of the J genes on the x-axis can be altered by altering the “<span
202 style='color:black;background:white'>Order of V(D)J genes in graphs” filter on
203 the main page of the Immune repertoire pipeline.<o:p></o:p></span></span></p>
204
205 <p class=MsoNoSpacing style='text-align:justify'><o:p>&nbsp;</o:p></p>
206
207 <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
208 justify;line-height:normal'><u><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'>D
209 reading frame<o:p></o:p></span></u></p>
210
211 <p class=MsoNoSpacing style='text-align:justify'><span lang=EN-GB
212 style='font-size:12.0pt;font-family:"Times New Roman","serif";mso-ansi-language:
213 EN-GB'>Bar graph visualizing the frequency by which each D reading frame is
214 used in each donor.</span></p>
101 215
102 </div> 216 </div>
103 217
104 </body> 218 </body>
105 219