Mercurial > repos > davidvanzessen > argalaxy_tools
diff create_container_hash.py @ 57:33412e85e669 draft
"planemo upload commit 2a9ed3adf321f18047c3746735a5e79a4586798d"
author | rhpvorderman |
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date | Wed, 02 Feb 2022 10:50:01 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/create_container_hash.py Wed Feb 02 10:50:01 2022 +0000 @@ -0,0 +1,29 @@ +#!/usr/bin/env python3 + +import sys + +from xml.etree import ElementTree +from xml.etree.ElementTree import Element + +DEFAULT_BASE_IMAGE = "bgruening/busybox-bash:latest" +def main(): + try: + base_image = sys.argv[1] + except IndexError: + base_image = DEFAULT_BASE_IMAGE + tool = ElementTree.parse("complete_immunerepertoire.xml").getroot() + requirements: Element = tool.find("requirements") + packages = [] + for req in requirements.findall("requirement"): + if req.get("type") == "package": + name = req.text + version = req.get("version") + package_string = f"{name}={version}" + packages.append(package_string) + with open("container_hash.tsv", mode="wt") as container_hash_file: + container_hash_file.write("#targets\tbase_image\timage_build\n") + container_hash_file.write(",".join(packages) + f"\t{base_image}\t0\n") + + +if __name__ == "__main__": + main()