view report_clonality/naive_clonality.htm @ 25:94765af0db1f draft

Uploaded
author davidvanzessen
date Thu, 09 Feb 2017 07:20:09 -0500
parents 5d11c9139a55
children 4d2a8f98a502
line wrap: on
line source

<html>

<head>
<meta http-equiv=Content-Type content="text/html; charset=windows-1252">
<meta name=Generator content="Microsoft Word 14 (filtered)">
<style>
<!--
 /* Font Definitions */
 @font-face
	{font-family:Calibri;
	panose-1:2 15 5 2 2 2 4 3 2 4;}
 /* Style Definitions */
 p.MsoNormal, li.MsoNormal, div.MsoNormal
	{margin-top:0in;
	margin-right:0in;
	margin-bottom:10.0pt;
	margin-left:0in;
	line-height:115%;
	font-size:11.0pt;
	font-family:"Calibri","sans-serif";}
p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
	{margin:0in;
	margin-bottom:.0001pt;
	font-size:11.0pt;
	font-family:"Calibri","sans-serif";}
.MsoChpDefault
	{font-family:"Calibri","sans-serif";}
.MsoPapDefault
	{margin-bottom:10.0pt;
	line-height:115%;}
@page WordSection1
	{size:8.5in 11.0in;
	margin:1.0in 1.0in 1.0in 1.0in;}
div.WordSection1
	{page:WordSection1;}
-->
</style>

</head>

<body lang=EN-US>

<div class=WordSection1>

<p class=MsoNoSpacingCxSpFirst style='text-align:justify'><span
style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each donor a
subtab is provided containing information on the sequence overlap between
replicates of the different replicates of one donor. Dependent on the settings
of the Shared clonal types / clonality filter a clonality score is given.  The clonality
score  is calculated according to the formula described by </span><a
name="OLE_LINK13"></a><a name="OLE_LINK12"></a><a name="OLE_LINK11"><span
lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Boyd
et al, PMID: 20161664. </span></a></p>

<p class=MsoNoSpacingCxSpLast style='text-align:justify'><span lang=EN-GB
style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each
individual replicate the number of reads is reported. In addition, the number
of coincidences between the different replicates of the same donor are reported.
</span></p>

<p class=MsoNormal>&nbsp;</p>

</div>

</body>

</html>