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comparison imgt_locus_split.xml @ 0:b00c257f0a67 draft

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author davidvanzessen
date Thu, 13 Jul 2017 10:24:39 -0400
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1 <tool id="imgt_locus_split" name="IMGT Locus Split" version="0.1">
2 <requirements>
3 <requirement type="package" version="0.4.13">python-magic</requirement>
4 </requirements>
5 <command detect_errors="exit_code"><![CDATA[
6 python3 $__tool_directory__/imgt_locus_split.py
7 --input $input
8 --loci $loci
9 --output $output
10 ]]></command>
11 <inputs>
12 <param name="input" type="data" format="data" label="The IMGT zip file to be split"/>
13 <param name="loci" type="select" label="Loci" multiple="true" display="checkboxes">
14 <option value="IG" selected="true">IG</option>
15 <option value="IGH">IGH</option>
16 <option value="IGK">IGK</option>
17 <option value="IGL">IGL</option>
18 <option value="TR" selected="true">TR</option>
19 <option value="TRA">TRA</option>
20 <option value="TRB">TRB</option>
21 <option value="TRD">TRD</option>
22 <option value="TRG">TRG</option>
23 </param>
24 </inputs>
25 <outputs>
26 <data format="imgt_archive" name="output" label="${input.name} $loci" />
27 </outputs>
28 <help><![CDATA[
29 Creates a new IMGT zip file for every checked locus with sequences from only that locus.
30 ]]></help>
31 <citations>
32 <citation type="doi">10.1093/nar/gku1056</citation>
33 </citations>
34 </tool>