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author davidvanzessen
date Tue, 18 Jun 2019 04:46:26 -0400
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1 # SHM CSR
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3 Somatic hypermutation and class switch recombination pipeline
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5 # Dependencies
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6 --------------------
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7 [Python 2.7](https://www.python.org/)
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8 [Change-O](https://changeo.readthedocs.io/en/version-0.4.4/)
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9 [Baseline](http://selection.med.yale.edu/baseline/)
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10 [R data.table](https://cran.r-project.org/web/packages/data.table/data.table.pdf)
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11 [R ggplot2](https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf)
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12 [R reshape2](https://cran.r-project.org/web/packages/reshape/reshape.pdf)