Mercurial > repos > davidvanzessen > shm_csr

annotate README.md @ 78:aff3ba86ef7a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Mon, 31 Aug 2020 11:20:08 -0400
parents 58d2377b507d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
67
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
1 # SHM CSR
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
2
77
58d2377b507d Uploaded
davidvanzessen
parents: 67
diff changeset
3 Somatic hypermutation and class switch recombination pipeline.
58d2377b507d Uploaded
davidvanzessen
parents: 67
diff changeset
4 The docker version can be found [here](https://github.com/ErasmusMC-Bioinformatics/ARGalaxy-docker).
67
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
5
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
6 # Dependencies
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
7 --------------------
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
8 [Python 2.7](https://www.python.org/)
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
9 [Change-O](https://changeo.readthedocs.io/en/version-0.4.4/)
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
10 [Baseline](http://selection.med.yale.edu/baseline/)
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
11 [R data.table](https://cran.r-project.org/web/packages/data.table/data.table.pdf)
ba33b94637ca Uploaded
davidvanzessen
parents:
diff changeset
12 [R ggplot2](https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf)
77
58d2377b507d Uploaded
davidvanzessen
parents: 67
diff changeset
13 [R reshape2](https://cran.r-project.org/web/packages/reshape/reshape.pdf)