Mercurial > repos > davidvanzessen > shm_csr

annotate CHANGELOG.md @ 92:cf8ad181628f draft

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planemo upload commit 36be3b053802693392f935e6619ba3f2b1704e3c
author rhpvorderman
date Mon, 12 Dec 2022 12:32:44 +0000
parents f387cc1580c6
children 8fcf31272f6e
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92
cf8ad181628f planemo upload commit 36be3b053802693392f935e6619ba3f2b1704e3c
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1 version 1.6.0
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2 -------------
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3 + Faster runtime due to faster gene identification, sequence overview creation
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4 and IMGT TAR archive creation.
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5 + Two extra IMGT files are provided. One for IGM with less than 2% mutations
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6 (naive) and one for IGM with more than 2% mutations (naive memory).
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7 + All IMGT files per sequence class are always provided regardless of how the
cf8ad181628f planemo upload commit 36be3b053802693392f935e6619ba3f2b1704e3c
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8 ``Fast`` option is set. Previously this had to be set to ``no``.
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9 + Fix a bug in sequence overview where links to unmatched sequences where not
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10 working properly in the by_id.html file.
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11
91
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12 version 1.5.0
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13 -------------
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14 + Add an option to download all output files in a zip file.
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15
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16 version 1.4.0
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17 -------------
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18 + Fix a bug where synonymous mutations where incorrectly parsed.
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19 + Use a container from biocontainers.
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20
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21 version 1.3.3
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22 -------------
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23 + Fix a bug where tandem lengths were incorrectly calculated.
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24
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25 version 1.3.2
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26 -------------
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27 + Fix a bug where the file removal process caused errors.
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28
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29 version 1.3.1
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30 -------------
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31 + Fix issues with container discovery
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32
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33 version 1.3.0
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34 -------------
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35 + Add missing dependencies to the requirements section.
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36
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37 version 1.2.0
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38 -------------
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39 + Add a container in which the tool can execute.
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40 + Remove redundant files after execution.
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41
83
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42 version 1.1.0
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43 -------------
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44 + Added changeo as a dependency. Porting to python3 was necessary to achieve
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45 this. This will make sure the shm_csr package can be installed on all
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46 galaxies.
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47 + Make sure the wrapper script runs with `set -e -o pipefail` and fails on
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48 error.
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49 + Updated all python scripts to work on python3