Mercurial > repos > davidvanzessen > shm_csr

comparison wrapper.sh @ 96:385dea3c6cb5 draft

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planemo upload commit 423a48569c69301fdbf893ac3a649128404dfff5
author rhpvorderman
date Fri, 05 Jan 2024 08:53:22 +0000
parents d63eff357515
children d714f5ea83d7
comparison
equal deleted inserted replaced
95:d63eff357515 96:385dea3c6cb5
21 filter_unique=${17} 21 filter_unique=${17}
22 filter_unique_count=${18} 22 filter_unique_count=${18}
23 class_filter=${19} 23 class_filter=${19}
24 empty_region_filter=${20} 24 empty_region_filter=${20}
25 fast=${21} 25 fast=${21}
26 BASENAME=$(basename "$input") 26 BASENAME=$(basename "$title")
27 # Cut off .txz or .tgz suffix and also replace spaces with underscores. 27 # Cut off .txz or .tgz suffix and also replace spaces with underscores.
28 NEW_IMGT_PREFIX="new_IMGT_${BASENAME%.*}" 28 NEW_IMGT_PREFIX="new_IMGT_${BASENAME%.*}"
29 NEW_IMGT_PREFIX=${NEW_IMGT_PREFIX// /_} 29 NEW_IMGT_PREFIX=${NEW_IMGT_PREFIX// /_}
30 30
31 #exec 5> debug_output.txt 31 #exec 5> debug_output.txt
32 #BASH_XTRACEFD="5" 32 #BASH_XTRACEFD="5"
33 ## Busybox date does not support '+%s.%N'. So use a custom program. Can be 33 ## Busybox date does not support '+%s.%N'. So use a custom program. Can be
34 ## Compiled with cc -Os show_time_as_float.c -o show_time_as_float 34 ## Compiled with cc -static -Os show_time_as_float.c -o show_time_as_float
35 #PS4='$(${dir}/show_time_as_float) $LINENO: ' 35 #PS4='$(${dir}/show_time_as_float) $LINENO: '
36 #set -x 36 #set -x
37 37
38 mkdir -p $outdir 38 mkdir -p $outdir
39 39