Mercurial > repos > davidvanzessen > shm_csr

comparison shm_csr.xml @ 10:4b695ca65213 draft

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Uploaded
author davidvanzessen
date Wed, 09 Nov 2016 09:45:32 -0500
parents 2ddb9a21f635
children c4ab5034c4d4
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9:372ccdcf0b2d 10:4b695ca65213
15 <option value="productive" selected="true">Productive (Productive and Productive see comment)</option> 15 <option value="productive" selected="true">Productive (Productive and Productive see comment)</option>
16 <option value="unproductive">Unproductive (Unproductive and Unproductive see comment)</option> 16 <option value="unproductive">Unproductive (Unproductive and Unproductive see comment)</option>
17 <option value="remove_unknown">Productive and Unproductive (Productive, Productive see comment, Unproductive, Unproductive and Unproductive see comment)</option> 17 <option value="remove_unknown">Productive and Unproductive (Productive, Productive see comment, Unproductive, Unproductive and Unproductive see comment)</option>
18 </param> 18 </param>
19 <param name="filter_uniques" type="select" label="Filter unique sequences" help="See below for an example."> 19 <param name="filter_uniques" type="select" label="Filter unique sequences" help="See below for an example.">
20 <option value="remove">Remove uniques (Based on nucleotide sequence + C)</option> 20 <option value="remove" selected="true">Remove uniques (Based on nucleotide sequence + C)</option>
21 <option value="keep">Keep uniques (Based on nucleotide sequence + C)</option> 21 <option value="keep">Keep uniques (Based on nucleotide sequence + C)</option>
22 <option value="no" selected="true">No</option> 22 <option value="no">No</option>
23 </param> 23 </param>
24 <param name="unique" type="select" label="Remove duplicates based on" help="" > 24 <param name="unique" type="select" label="Remove duplicates based on" help="" >
25 <option value="VGene,AA.JUNCTION,best_match" selected="true">Top.V.Gene, CDR3 (AA), C region</option> 25 <option value="VGene,AA.JUNCTION,best_match">Top.V.Gene, CDR3 (AA), C region</option>
26 <option value="VGene,AA.JUNCTION">Top.V.Gene, CDR3 (AA)</option> 26 <option value="VGene,AA.JUNCTION">Top.V.Gene, CDR3 (AA)</option>
27 <option value="AA.JUNCTION,best_match">CDR3 (AA), C region</option> 27 <option value="AA.JUNCTION,best_match">CDR3 (AA), C region</option>
28 <option value="AA.JUNCTION">CDR3 (AA)</option> 28 <option value="AA.JUNCTION">CDR3 (AA)</option>
29 29
30 <option value="VGene,CDR3.IMGT.seq,best_match" selected="true">Top.V.Gene, CDR3.nt.Seq, C region</option> 30 <option value="VGene,CDR3.IMGT.seq,best_match" selected="true">Top.V.Gene, CDR3.nt.Seq, C region</option>
31 <option value="VGene,CDR3.IMGT.seq">Top.V.Gene, CDR3 (nt)</option> 31 <option value="VGene,CDR3.IMGT.seq">Top.V.Gene, CDR3 (nt)</option>
32 <option value="CDR3.IMGT.seq,best_match">CDR3 (nt), C region</option> 32 <option value="CDR3.IMGT.seq,best_match">CDR3 (nt), C region</option>
33 <option value="CDR3.IMGT.seq">CDR3 (nt)</option> 33 <option value="CDR3.IMGT.seq">CDR3 (nt)</option>
34 <option value="Sequence.ID">Don't remove duplicates</option> 34 <option value="Sequence.ID" selected="true">Don't remove duplicates</option>
35 </param> 35 </param>
36 <param name="class_filter" type="select" label="Human Class/Subclass filter" help="" > 36 <param name="class_filter" type="select" label="Human Class/Subclass filter" help="" >
37 <option value="70_70" selected="true">>70% class and >70% subclass</option> 37 <option value="70_70" selected="true">>70% class and >70% subclass</option>
38 <option value="60_55">>60% class and >55% subclass</option> 38 <option value="60_55">>60% class and >55% subclass</option>
39 <option value="70_0">>70% class</option> 39 <option value="70_0">>70% class</option>