Mercurial > repos > davidvanzessen > shm_csr
diff wrapper.sh @ 36:43d182135230 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Fri, 16 Dec 2016 10:03:43 -0500 |
| parents | 744e5e2e3556 |
| children | 767dd9327009 |
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--- a/wrapper.sh Fri Dec 16 10:00:10 2016 -0500 +++ b/wrapper.sh Fri Dec 16 10:03:43 2016 -0500 @@ -73,16 +73,16 @@ mkdir $outdir/new_IMGT - cat `find $PWD/files/ -name "1_*"` > "$outdir/new_IMGT/1_Summary.txt" - cat `find $PWD/files/ -name "2_*"` > "$outdir/new_IMGT/2_IMGT-gapped-nt-sequences.txt" - cat `find $PWD/files/ -name "3_*"` > "$outdir/new_IMGT/3_Nt-sequences.txt" - cat `find $PWD/files/ -name "4_*"` > "$outdir/new_IMGT/4_IMGT-gapped-AA-sequences.txt" - cat `find $PWD/files/ -name "5_*"` > "$outdir/new_IMGT/5_AA-sequences.txt" - cat `find $PWD/files/ -name "6_*"` > "$outdir/new_IMGT/6_Junction.txt" - cat `find $PWD/files/ -name "7_*"` > "$outdir/new_IMGT/7_V-REGION-mutation-and-AA-change-table.txt" - cat `find $PWD/files/ -name "8_*"` > "$outdir/new_IMGT/8_V-REGION-nt-mutation-statistics.txt" - cat `find $PWD/files/ -name "9_*"` > "$outdir/new_IMGT/9_V-REGION-AA-change-statistics.txt" - cat `find $PWD/files/ -name "10_*"` > "$outdir/new_IMGT/10_V-REGION-mutation-hotspots.txt" + cat "`find $PWD/files/ -name "1_*"`" > "$outdir/new_IMGT/1_Summary.txt" + cat "`find $PWD/files/ -name "2_*"`" > "$outdir/new_IMGT/2_IMGT-gapped-nt-sequences.txt" + cat "`find $PWD/files/ -name "3_*"`" > "$outdir/new_IMGT/3_Nt-sequences.txt" + cat "`find $PWD/files/ -name "4_*"`" > "$outdir/new_IMGT/4_IMGT-gapped-AA-sequences.txt" + cat "`find $PWD/files/ -name "5_*"`" > "$outdir/new_IMGT/5_AA-sequences.txt" + cat "`find $PWD/files/ -name "6_*"`" > "$outdir/new_IMGT/6_Junction.txt" + cat "`find $PWD/files/ -name "7_*"`" > "$outdir/new_IMGT/7_V-REGION-mutation-and-AA-change-table.txt" + cat "`find $PWD/files/ -name "8_*"`" > "$outdir/new_IMGT/8_V-REGION-nt-mutation-statistics.txt" + cat "`find $PWD/files/ -name "9_*"`" > "$outdir/new_IMGT/9_V-REGION-AA-change-statistics.txt" + cat "`find $PWD/files/ -name "10_*"`" > "$outdir/new_IMGT/10_V-REGION-mutation-hotspots.txt" mkdir $outdir/new_IMGT_IGA cp $outdir/new_IMGT/* $outdir/new_IMGT_IGA