Mercurial > repos > dazeone > clonalframeml
changeset 7:b34a8459650d draft
Deleted selected files
| author | dazeone |
|---|---|
| date | Mon, 15 Mar 2021 15:16:33 +0000 |
| parents | c659b21964c9 |
| children | 0afb951f32b0 |
| files | clonalframeml.xml |
| diffstat | 1 files changed, 0 insertions(+), 37 deletions(-) [+] |
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--- a/clonalframeml.xml Mon Mar 15 15:03:45 2021 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,37 +0,0 @@ -<tool id="clonalframeMLtool" name="clonalframeML" version="1.0"> - <description>a software package that performs efficient inference of recombination in bacterial genomes</description> -<requirements> - <requirement type="package" version="1.12">clonalframeml</requirement> -</requirements> - -<command>ClonalFrameMLold $input $input1 $output ; mv $output'.ML_sequence.fasta' $output ; mv $output'.labelled_tree.newick' $output1 ; mv $output'.em.txt' $output2 </command> - <inputs> - <param format="newick" name="input" type="data" label="Newick file : " multiple="false" display="checkboxes"/> - <param format="fasta" name="input1" type="data" label="Alignement fasta file : " multiple="false" display="checkboxes"/> - - </inputs> - - <outputs> - <data format="fasta" name="output" label="reduced Fasta Alignment" /> - <data format="newick" name="output1" label="labelled newick tree" /> - <data format="tabular" name="output2" label="em.txt" /> - </outputs> - - <tests> - <test> - <param name="input" value="tree_45ind_190kSNP.withST.nwk" /> - <param name="input" value="190ksnp_alignment_KP2.fa" /> - <output name="output" file="results.txt" /> - </test> -</tests> - - <help> -For full documentation, please go to the ClonalframeML wiki (https://github.com/katholt/Kleborate/wiki) - </help> - <citations> - <citation type="doi">10.1371/journal.pcbi.1004041</citation> - </citations> -</tool> - - -