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comparison grapetree.xml @ 1:07e1cfce973d draft

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author dazeone
date Tue, 22 Mar 2022 18:21:32 +0000
parents 92badd7031c1
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0:92badd7031c1 1:07e1cfce973d
2 <description>visualization of core genomic relationships among 100,000 bacterial pathogens.</description> 2 <description>visualization of core genomic relationships among 100,000 bacterial pathogens.</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.1">grapetree</requirement> 4 <requirement type="package" version="2.1">grapetree</requirement>
5 </requirements> 5 </requirements>
6 6
7 <command>grapetree '-p' $input '-m' $option-m</command> 7 <command>grapetree '-p' $input '-m' $methode > $output1 </command>
8 8
9 <inputs> 9 <inputs>
10 <param format="tabular" name="input" type="data" label="Newick file : " multiple="false" display="checkboxes"/> 10 <param format="tabular" name="input" type="data" label="Tabular file : " multiple="false" display="checkboxes"/>
11 11
12 <param name="option-m" type="select" label="Genetic code table (Default = 1-Standard Code):"> 12 <param name="methode" type="select" label="Methode:">
13 <option value="NJ">Standard Code</option> 13 <option value="NJ">NJ</option>
14 <option value="MSTreeV2">MSTreeV2</option> 14 <option value="MSTreeV2">MSTreeV2</option>
15 </param> 15 </param>
16 16
17 </inputs> 17 </inputs>
18 18
19 <outputs> 19 <outputs>
20 <data format="newick" name="output1" label="labelled newick tree" /> 20 <data format="newick" name="output1" file="output1.nwk" label="labelled newick tree" />
21 </outputs> 21 </outputs>
22 22
23 <tests> 23 <tests>
24 <test> 24 <test>
25 <param name="input" value="simuled-data.profile" /> 25 <param name="input" value="simuled-data.profile" />