<tool id="grapetreetool" name="grapetree" version="1.0">
  <description>visualization of core genomic relationships among 100,000 bacterial pathogens.</description>
<requirements>
  <requirement type="package" version="2.1">grapetree</requirement>
</requirements>

 <command>grapetree '-p' $input '-m' $option-m</command>

 <inputs>
  <param format="tabular" name="input" type="data" label="Newick file : " multiple="false" display="checkboxes"/>
  
<param name="option-m" type="select" label="Genetic code table (Default = 1-Standard Code):">
	<option value="NJ">Standard Code</option> 
	<option value="MSTreeV2">MSTreeV2</option> 
</param>
 
 </inputs>

<outputs>
	<data format="newick" name="output1" label="labelled newick tree" />
</outputs>

<tests>
    <test>
            <param name="input" value="simuled-data.profile" />
            <output name="output" file="output1.nwk" />
    </test>
</tests>

<help>
For full documentation, please go to the GrapeTree wiki (https://github.com/achtman-lab/GrapeTree)
</help>
<citations>
	<citation type="doi">10.1101/gr.232397.117</citation>
</citations>
</tool>