Mercurial > repos > dazeone > grapetree
comparison grapetree.xml @ 0:92badd7031c1 draft
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| author | dazeone |
|---|---|
| date | Tue, 22 Mar 2022 14:34:16 +0000 |
| parents | |
| children | 07e1cfce973d |
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| -1:000000000000 | 0:92badd7031c1 |
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| 1 <tool id="grapetreetool" name="grapetree" version="1.0"> | |
| 2 <description>visualization of core genomic relationships among 100,000 bacterial pathogens.</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="2.1">grapetree</requirement> | |
| 5 </requirements> | |
| 6 | |
| 7 <command>grapetree '-p' $input '-m' $option-m</command> | |
| 8 | |
| 9 <inputs> | |
| 10 <param format="tabular" name="input" type="data" label="Newick file : " multiple="false" display="checkboxes"/> | |
| 11 | |
| 12 <param name="option-m" type="select" label="Genetic code table (Default = 1-Standard Code):"> | |
| 13 <option value="NJ">Standard Code</option> | |
| 14 <option value="MSTreeV2">MSTreeV2</option> | |
| 15 </param> | |
| 16 | |
| 17 </inputs> | |
| 18 | |
| 19 <outputs> | |
| 20 <data format="newick" name="output1" label="labelled newick tree" /> | |
| 21 </outputs> | |
| 22 | |
| 23 <tests> | |
| 24 <test> | |
| 25 <param name="input" value="simuled-data.profile" /> | |
| 26 <output name="output" file="output1.nwk" /> | |
| 27 </test> | |
| 28 </tests> | |
| 29 | |
| 30 <help> | |
| 31 For full documentation, please go to the GrapeTree wiki (https://github.com/achtman-lab/GrapeTree) | |
| 32 </help> | |
| 33 <citations> | |
| 34 <citation type="doi">10.1101/gr.232397.117</citation> | |
| 35 </citations> | |
| 36 </tool> |