--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/resfinder/cge/out/beone.json	Wed Dec 08 01:46:07 2021 +0000
@@ -0,0 +1,95 @@
+{
+"software_result": {
+    "type": "software_result",
+    "key": "string*",
+    "software_name": "string*",
+    "software_version": "string*",
+    "software_branch": "string",
+    "software_commit": "string",
+    "software_log": "string",
+    "run_id": "string",
+    "run_date": "date",
+    "databases": "dict database:class",
+    "genes": "dict gene:class",
+    "seq_variations": "dict seq_variation:class",
+    "phenotypes": "dict phenotype:class"
+  },
+"database": {
+    "type": "database",
+    "key": "string*",
+    "database_name": "string*",
+    "database_version": "string",
+    "database_branch": "string",
+    "database_commit": "string",
+    "checksum_sha256": "char64"
+  },
+"gene": {
+    "type": "gene",
+    "key": "string*",
+    "name": "string*",
+    "identity": "percentage",
+    "alignment_length": "integer",
+    "ref_gene_lenght": "integer",
+    "coverage": "percentage",
+    "depth": "float",
+    "ref_id": "string*",
+    "ref_acc": "string",
+    "ref_start_pos": "integer",
+    "ref_end_pos": "integer",
+    "query_id": "string",
+    "query_start_pos": "integer",
+    "query_end_pos": "integer",
+    "phenotypes": "array phenotype.key",
+    "ref_database": "database.key"
+  },
+"seq_region": {
+      "type": "seq_region",
+      "key": "string*",
+      "name": "string*",
+      "gene": "bool_or_unknown",
+      "identity": "percentage",
+      "alignment_length": "integer",
+      "ref_gene_lenght": "integer",
+      "coverage": "percentage",
+      "depth": "float",
+      "ref_id": "string*",
+      "ref_acc": "string",
+      "ref_start_pos": "integer",
+      "ref_end_pos": "integer",
+      "query_id": "string",
+      "query_start_pos": "integer",
+      "query_end_pos": "integer",
+      "phenotypes": "array phenotype.key",
+      "ref_database": "database.key"
+    },
+"seq_variation": {
+    "type": "seq_variation",
+    "key": "string*",
+    "ref_id": "string*",
+    "seq_var": "seq_var_string",
+    "codon_change": "codon_change_string",
+    "ref_codon": "nucleotides",
+    "var_codon": "nucleotides",
+    "ref_aa": "aminoacid_1_char",
+    "var_aa": "aminoacid_1_char",
+    "ref_start_pos": "integer",
+    "ref_end_pos": "integer",
+    "substitution": "bool",
+    "insertion": "bool",
+    "deletion": "bool",
+    "ref_database": "database.key",
+    "genes": "array gene.key",
+    "phenotypes": "array phenotype.key"
+  },
+"phenotype": {
+    "type": "phenotype",
+    "key": "string*",
+    "category": "vocabulary*",
+    "amr_classes": "array vocabulary",
+    "amr_resistance": "vocabulary",
+    "amr_resistant": "bool_or_unknown",
+    "genes": "array gene.key",
+    "seq_variations": "array seq_variation.key",
+    "ref_database": "database.key"
+  }
+}