{
"software_result": {
    "type": "software_result",
    "key": "string*",
    "software_name": "string*",
    "software_version": "string*",
    "software_branch": "string",
    "software_commit": "string",
    "software_log": "string",
    "run_id": "string",
    "run_date": "date",
    "databases": "dict database:class",
    "genes": "dict gene:class",
    "seq_variations": "dict seq_variation:class",
    "phenotypes": "dict phenotype:class"
  },
"database": {
    "type": "database",
    "key": "string*",
    "database_name": "string*",
    "database_version": "string",
    "database_branch": "string",
    "database_commit": "string",
    "checksum_sha256": "char64"
  },
"gene": {
    "type": "gene",
    "key": "string*",
    "name": "string*",
    "identity": "percentage",
    "alignment_length": "integer",
    "ref_gene_lenght": "integer",
    "coverage": "percentage",
    "depth": "float",
    "ref_id": "string*",
    "ref_acc": "string",
    "ref_start_pos": "integer",
    "ref_end_pos": "integer",
    "query_id": "string",
    "query_start_pos": "integer",
    "query_end_pos": "integer",
    "phenotypes": "array phenotype.key",
    "ref_database": "database.key"
  },
"seq_region": {
      "type": "seq_region",
      "key": "string*",
      "name": "string*",
      "gene": "bool_or_unknown",
      "identity": "percentage",
      "alignment_length": "integer",
      "ref_gene_lenght": "integer",
      "coverage": "percentage",
      "depth": "float",
      "ref_id": "string*",
      "ref_acc": "string",
      "ref_start_pos": "integer",
      "ref_end_pos": "integer",
      "query_id": "string",
      "query_start_pos": "integer",
      "query_end_pos": "integer",
      "phenotypes": "array phenotype.key",
      "ref_database": "database.key"
    },
"seq_variation": {
    "type": "seq_variation",
    "key": "string*",
    "ref_id": "string*",
    "seq_var": "seq_var_string",
    "codon_change": "codon_change_string",
    "ref_codon": "nucleotides",
    "var_codon": "nucleotides",
    "ref_aa": "aminoacid_1_char",
    "var_aa": "aminoacid_1_char",
    "ref_start_pos": "integer",
    "ref_end_pos": "integer",
    "substitution": "bool",
    "insertion": "bool",
    "deletion": "bool",
    "ref_database": "database.key",
    "genes": "array gene.key",
    "phenotypes": "array phenotype.key"
  },
"phenotype": {
    "type": "phenotype",
    "key": "string*",
    "category": "vocabulary*",
    "amr_classes": "array vocabulary",
    "amr_resistance": "vocabulary",
    "amr_resistant": "bool_or_unknown",
    "genes": "array gene.key",
    "seq_variations": "array seq_variation.key",
    "ref_database": "database.key"
  }
}