annotate Cytoscape.sh @ 0:e3beb33f88f0 draft

planemo upload commit 11382afe87364aaafb19973470d5066229a6e34f
author dereeper
date Tue, 14 Aug 2018 08:02:10 -0400
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1 #!/bin/bash
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3 tool_path=$(dirname $0)
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5 filein=$1
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6 cytoscape_html=$2
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7 logfile=$3
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9 perl $tool_path/Cytoscape.pl --input $filein --html $cytoscape_html >>$logfile 2>&1
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